Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SSR3 Gene 0 318.04 340.88 186.48 179.57 235.30 81.95 175.80 102.55 108.66 147.37 250.55 937.53 821.71 340.29 400.12 305.18 388.27 80.77 178.78 131.75 220.26 454.28 230.89 2 265044 Transcript 0 158.10 217.26 108.25 110.98 128.61 40.88 103.53 58.16 58.78 78.80 94.35 448.52 392.59 136.56 162.32 133.09 166.11 35.83 94.68 66.69 85.36 242.35 108.44 3 467789 Transcript 0 3.48 3.09 6.06 0.00 12.39 6.64 0.00 2.22 0.00 2.39 18.48 25.66 34.58 5.18 28.56 19.57 17.48 2.57 4.14 2.36 8.28 0.00 0.00 4 476217 Transcript 0 12.97 2.89 0.00 3.26 4.33 2.16 11.75 2.55 1.13 0.00 18.79 25.06 20.45 19.19 13.72 8.72 9.44 0.00 0.00 0.00 2.41 11.70 3.24 5 467733 Transcript 1 13.09 11.43 14.04 6.97 19.27 2.48 14.91 7.79 6.03 4.47 21.71 65.37 58.23 35.03 16.33 26.20 29.00 5.28 5.10 11.60 3.31 32.26 6.69 6 463503 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 4.37 2.68 0.00 0.70 0.00 0.00 0.00 0.50 0.52 0.00 0.00 7 496050 Transcript 0 0.00 0.00 0.35 0.39 1.03 0.00 1.02 0.85 0.35 0.00 0.31 2.34 2.96 3.99 1.18 0.57 1.27 0.00 0.00 0.44 1.81 0.00 0.00 8 478842 Transcript 0 0.90 2.75 1.17 2.15 0.00 0.39 0.57 1.10 0.79 0.37 2.07 6.51 18.39 6.20 4.21 12.10 2.12 1.93 3.79 1.37 5.66 4.91 2.52 9 498205 Transcript 0 25.35 5.64 5.74 5.40 11.23 3.04 4.82 3.33 3.22 3.83 12.85 59.09 33.41 12.17 15.22 12.26 26.61 4.23 3.19 3.95 8.50 19.68 11.56 10 464138 Transcript 0 6.07 1.23 0.90 0.71 3.12 2.09 1.53 1.74 1.27 1.16 2.96 27.09 21.62 6.45 6.07 10.36 7.93 0.06 0.00 2.08 0.81 13.21 3.59 11 ER1a ExonRegion 0 3.29 1.02 0.03 0.49 0.89 4.58 1.51 0.00 0.86 0.67 0.59 0.00 0.00 3.38 1.61 6.93 6.05 1.54 0.27 3.19 1.35 0.29 4.57 12 E1_Ab KnownBoundary 0 6.89 0.00 0.00 0.00 0.00 7.84 2.03 0.00 0.00 2.58 0.00 0.00 0.00 6.89 0.00 11.62 4.39 0.00 0.00 2.94 0.00 0.00 4.35 13 E1_Ac KnownBoundary 0 14.74 29.80 0.00 0.00 29.63 43.27 18.02 0.00 1.79 1.61 10.32 0.00 0.00 32.08 29.79 29.99 46.94 11.48 22.40 15.92 33.85 9.31 46.44 14 E1_Ad KnownBoundary 0 174.92 106.10 23.15 17.61 46.86 88.87 47.17 13.80 15.83 17.86 40.69 18.01 12.34 56.57 65.27 129.11 89.76 91.11 25.32 47.94 77.84 82.24 126.34 15 ER1b ExonRegion 0 41.80 42.37 8.88 5.22 15.50 53.26 26.37 4.03 8.23 7.45 17.24 0.00 0.00 49.54 62.62 49.78 65.74 21.40 12.34 30.59 49.77 27.35 66.07 16 ER1c ExonRegion 0 148.16 91.77 24.05 13.29 60.20 101.78 66.86 10.37 13.90 20.50 45.42 0.00 0.00 113.89 158.84 134.12 134.92 45.73 41.81 62.50 104.13 70.58 139.12 17 ER1d ExonRegion 1 995.44 387.85 137.72 98.49 234.95 182.57 216.43 51.28 91.78 125.45 413.50 117.41 107.26 552.06 634.54 559.99 750.83 191.06 225.42 177.67 680.37 362.84 434.27 18 E1a_E4a KnownJunction 1 258.49 119.26 171.14 128.42 66.64 32.77 24.16 66.75 110.04 170.14 779.25 402.43 260.37 480.02 570.25 216.27 985.79 100.23 96.10 279.70 1014.08 241.81 132.14 19 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.95 3.07 0.00 1.39 0.00 0.00 0.00 1.00 1.03 0.00 0.00 20 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.79 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3a ExonRegion 0 0.00 0.00 0.70 0.79 2.05 0.00 2.04 0.10 0.71 0.00 0.62 4.69 5.92 5.57 2.36 1.14 2.53 0.00 0.00 0.88 0.53 0.00 0.00 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 23 ER4a ExonRegion 0 468.32 121.02 301.86 260.49 265.47 116.29 97.63 169.05 195.53 261.20 844.14 875.57 793.98 1015.64 1353.03 1121.19 1185.05 318.60 432.81 353.26 792.50 908.37 838.91 24 E4a_E6b KnownJunction 0 1392.25 221.47 392.18 335.39 575.47 346.79 284.58 221.06 253.41 319.90 747.45 2340.91 2273.55 595.80 912.54 1101.51 822.53 266.92 318.32 310.64 426.20 890.21 748.12 25 ER5a ExonRegion 0 1.80 2.15 2.35 4.29 0.00 0.79 1.13 2.21 1.58 0.73 4.14 13.02 36.77 12.39 8.41 24.20 4.24 3.87 3.16 2.74 11.31 9.82 5.03 26 E5a_E6b KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 27 ER6a ExonRegion 0 25.35 5.64 5.74 5.40 11.23 3.04 4.82 3.33 3.22 3.83 12.85 59.09 33.41 12.17 15.22 12.26 26.61 4.23 3.19 3.95 8.50 19.68 11.56 28 E6_Ab KnownBoundary 0 3.19 0.00 2.96 2.06 0.00 0.00 0.00 1.81 0.00 0.00 7.21 5.55 22.40 2.41 0.00 3.93 12.25 0.00 0.00 0.00 2.97 3.12 3.24 29 E6_Ac KnownBoundary 0 6.89 3.03 3.61 0.00 11.80 0.00 4.06 0.00 1.53 0.00 0.00 25.21 19.97 3.00 0.00 3.50 11.78 0.00 3.39 9.08 0.00 5.51 0.00 30 ER6b ExonRegion 0 914.34 225.05 361.69 320.28 480.30 321.22 265.23 214.90 254.85 332.60 768.65 2185.66 1960.43 650.46 1096.19 1081.36 874.19 264.84 332.87 308.51 418.34 1043.84 700.88 31 ER6c ExonRegion 1 501.06 561.60 372.14 328.62 604.75 387.35 564.67 239.94 271.19 413.05 1173.12 1838.99 1689.94 853.83 1270.94 833.52 1318.39 170.31 392.32 321.71 494.83 1227.24 481.83 32 E6_Da KnownBoundary 0 13.71 27.76 13.69 4.10 7.98 0.00 0.00 6.20 4.63 3.41 20.22 89.28 35.55 26.19 45.12 15.81 30.76 2.57 4.80 6.39 11.06 34.54 3.93 33 E6a_E7a KnownJunction 0 719.24 918.06 354.16 263.14 1178.27 371.26 661.73 246.03 277.98 431.24 1203.36 2174.21 2173.56 896.11 1552.02 712.89 1518.84 128.01 243.96 331.41 643.23 1033.38 429.63 34 ER6d ExonRegion 0 12.32 16.27 11.94 3.18 8.99 8.46 1.15 5.01 3.29 4.65 27.01 79.82 48.82 24.15 28.86 25.45 37.66 3.65 5.64 8.84 12.32 26.07 1.43 35 E6_Db KnownBoundary 0 15.93 2.76 4.79 1.73 0.00 0.00 1.72 3.78 2.86 4.62 7.63 32.26 12.66 9.95 0.00 8.12 26.55 0.00 0.00 9.78 5.56 25.41 0.00 36 E6b_E7a KnownJunction 1 3.48 3.09 6.06 0.00 12.39 6.64 0.00 2.22 0.00 2.39 18.48 25.66 34.58 5.18 28.56 19.57 17.48 2.57 4.14 2.36 8.28 0.00 0.00 37 ER6e ExonRegion 0 12.14 2.47 1.81 1.43 2.68 4.18 3.06 3.49 2.53 2.31 5.93 48.33 29.60 8.20 3.00 12.42 12.39 0.12 0.00 4.15 1.63 20.90 7.17 38 E6c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 5.85 13.64 4.71 9.15 8.29 3.46 0.00 0.00 0.00 0.00 5.51 0.00 39 ER7a ExonRegion 0 1274.30 555.86 448.88 355.84 599.35 176.32 238.56 262.54 315.32 437.71 1238.45 3592.67 3339.02 1245.33 1730.60 1154.02 1420.39 274.91 518.80 360.52 683.45 1368.52 726.20 40 E7_Da KnownBoundary 0 38.30 2.57 10.35 6.29 7.98 5.11 9.72 6.37 6.51 5.67 36.27 51.17 69.15 21.84 19.53 26.06 38.90 5.06 7.53 5.75 3.15 43.84 4.35 41 E7a_E8a KnownJunction 0 583.88 416.18 463.02 356.07 406.79 122.83 234.72 252.28 246.09 364.27 987.30 2798.26 2278.26 1844.67 1997.66 975.64 1320.43 201.46 573.19 354.93 768.57 1157.86 637.66 42 E7_Db KnownBoundary 0 7.04 6.51 7.16 2.90 12.05 0.00 6.23 1.56 3.27 2.71 17.79 12.60 6.82 33.49 17.80 7.43 38.90 1.58 8.94 21.99 2.78 19.35 0.00 43 E7b_E8a KnownJunction 0 12.97 2.89 0.00 3.26 4.33 2.16 11.75 2.55 1.13 0.00 18.79 25.06 20.45 19.19 13.72 8.72 9.44 0.00 0.00 0.00 2.41 11.70 3.24 44 ER7b ExonRegion 0 34.32 4.79 14.18 8.57 17.20 3.67 15.60 8.27 8.38 5.24 45.01 65.87 95.14 58.58 32.54 32.69 66.49 5.68 9.10 18.09 11.18 53.43 6.71 45 ER7c ExonRegion 0 13.09 11.43 14.04 6.97 19.27 2.48 14.91 7.79 6.03 4.47 21.71 65.37 58.23 35.03 16.33 26.20 29.00 5.28 5.10 11.60 3.31 32.26 6.69 46 ER8a ExonRegion 0 349.56 432.00 348.45 253.78 335.20 99.98 182.81 188.03 205.73 301.57 872.99 2803.53 2329.35 1228.26 1316.25 777.58 1329.66 190.42 349.09 290.59 1001.61 882.61 471.83 47 E8_Da KnownBoundary 1 252.86 465.57 248.19 203.80 267.23 93.01 212.69 129.05 128.07 218.63 430.74 3353.29 2372.57 1203.55 1304.66 680.16 629.17 170.66 258.36 241.10 554.70 589.25 337.10 48 ER8b ExonRegion 0 254.45 356.47 305.33 252.73 269.73 99.03 210.96 157.42 171.77 261.19 470.07 3067.06 2311.61 1025.77 964.14 586.09 620.33 224.30 245.27 236.90 597.53 604.27 401.32 49 E8_Db KnownBoundary 0 379.92 371.91 371.51 313.15 374.70 134.98 288.91 162.00 201.07 279.93 499.18 2803.51 2263.49 963.28 978.31 581.47 632.82 260.78 327.92 244.42 607.46 725.00 521.14 50 ER8c ExonRegion 1 991.49 471.53 338.62 296.63 801.34 313.56 478.17 194.86 213.16 276.36 583.81 3495.47 3572.68 1308.12 1290.62 905.97 1100.12 234.08 508.93 322.22 844.83 893.80 679.74 51 E8_Dc KnownBoundary 0 199.22 193.19 331.24 325.13 234.89 143.27 192.11 197.53 196.24 252.82 303.60 1987.85 1364.52 643.60 548.24 405.36 524.64 135.35 228.15 228.76 344.04 714.90 382.17 52 ER8d ExonRegion 1 467.28 263.99 275.32 242.67 461.96 144.84 258.39 165.10 171.73 219.27 229.01 1969.51 1574.63 772.24 645.31 415.22 380.76 89.72 177.20 179.67 190.29 394.33 314.60 53 E8_Dd KnownBoundary 0 64.01 188.52 110.37 71.65 133.28 88.07 152.14 71.76 61.95 76.21 99.13 532.82 421.08 149.16 118.55 143.38 236.65 35.11 61.08 117.54 60.11 209.36 174.74 54 E8_De KnownBoundary 0 72.83 186.81 81.75 96.76 143.80 44.97 190.43 53.60 67.22 85.72 58.91 470.10 382.12 99.65 74.29 95.02 137.54 18.12 25.41 76.38 37.13 153.08 117.63 55 ER8e ExonRegion 1 244.99 375.70 196.67 194.89 347.18 144.41 308.15 132.23 145.13 200.13 197.16 1804.31 1591.09 510.38 512.07 309.10 406.84 61.90 133.79 180.85 115.14 418.27 311.28 56 ER8f ExonRegion 1 203.52 536.88 185.84 191.47 288.64 94.05 245.81 126.66 147.95 195.06 208.59 1897.25 1443.89 381.53 288.86 239.69 363.64 42.77 153.79 163.89 113.91 631.92 225.69 57 E8_Df KnownBoundary 1 470.53 608.38 179.53 246.89 293.21 71.27 247.71 130.90 174.59 199.58 237.85 2307.60 1050.42 442.23 425.61 251.73 348.20 24.50 153.51 163.24 115.34 954.69 141.87 58 ER8g ExonRegion 0 312.91 433.49 216.46 221.47 256.33 77.18 205.55 116.31 116.70 156.92 188.10 897.03 785.19 269.74 323.04 259.24 326.16 70.11 189.09 130.19 169.38 484.42 212.32 59 IG22 Intergenic 0 5.40 25.63 7.58 11.99 12.08 11.62 17.17 8.26 19.84 10.46 3.94 29.72 23.20 6.67 5.40 8.01 7.70 8.04 6.73 16.28 13.33 12.14 14.76 60 IG22_AR1 ActiveIntergenicRegion 0 5.41 25.71 7.61 12.02 12.12 11.66 17.22 8.28 19.90 10.49 3.95 29.80 23.26 6.68 5.41 8.03 7.72 8.06 6.75 16.32 13.36 12.18 14.80