Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	COMMD2	Gene	0	20.21	39.80	25.79	28.01	35.73	26.60	32.87	25.15	26.54	43.17	53.30	50.08	40.81	50.33	40.75	43.38	46.35	40.76	29.47	35.68	23.21	34.23	27.17
2	473414	Transcript	0	8.13	16.96	10.63	10.51	9.95	7.35	10.35	10.83	10.99	15.21	14.07	12.63	8.59	14.00	12.00	11.50	10.97	14.08	9.35	9.84	5.70	10.57	7.33
3	469896	Transcript	0	3.24	7.38	2.54	6.10	10.12	7.85	17.17	7.04	5.67	4.99	2.94	12.12	12.41	3.85	4.28	4.26	0.96	1.62	0.00	6.80	0.64	1.82	1.71
4	490008	Transcript	0	4.09	10.48	9.56	3.20	6.00	13.03	10.21	4.08	5.61	10.96	10.94	5.13	2.04	10.98	7.16	15.74	3.80	12.86	11.06	8.97	6.74	7.83	5.85
5	232863	Transcript	0	7.50	8.69	0.00	0.00	8.51	4.51	7.03	0.00	0.00	0.00	1.37	8.63	10.75	8.65	12.47	12.63	17.49	0.00	3.38	13.59	6.23	5.15	12.48
6	491617	Transcript	0	4.36	10.08	1.73	8.07	15.17	23.89	7.88	11.80	22.47	8.15	8.29	6.27	6.77	7.84	8.67	8.17	7.84	14.68	21.72	29.71	4.21	6.00	3.13
7	483708	Transcript	0	0.00	0.44	1.84	0.37	0.85	0.00	3.24	0.00	1.24	4.08	5.81	0.38	1.23	1.22	1.36	0.04	0.74	2.07	0.02	2.43	2.58	0.00	0.00
8	463077	Transcript	0	3.54	3.78	1.51	1.72	0.24	0.14	1.05	1.56	2.19	4.13	6.54	2.28	0.31	0.18	3.00	0.29	9.00	5.97	0.98	5.00	5.21	1.10	4.16
9	483146	Transcript	0	14.34	20.35	7.64	9.87	22.60	8.04	19.57	11.21	12.36	15.57	12.22	21.30	16.86	21.66	10.76	15.12	18.99	11.05	8.48	12.76	8.91	20.55	12.31
10	ER1a	ExonRegion	0	2.96	3.25	1.23	0.00	0.00	0.00	0.00	0.00	0.74	0.00	5.41	0.00	0.00	2.60	1.74	1.78	1.98	2.22	0.00	0.00	0.00	0.00	0.00
11	ER1b	ExonRegion	0	5.64	5.42	2.04	2.73	0.89	7.34	0.66	0.00	1.65	1.53	11.60	4.33	0.00	14.89	5.32	9.91	7.70	4.62	3.19	0.71	0.73	0.35	8.32
12	ER1c	ExonRegion	0	22.53	43.18	11.97	13.87	21.41	42.72	13.24	7.12	4.87	21.52	51.16	8.15	17.10	77.00	56.66	55.95	46.99	59.78	20.42	24.16	31.11	18.02	41.29
13	E1_Ae	KnownBoundary	0	194.40	257.39	34.15	47.85	183.62	209.42	167.20	25.30	20.20	63.96	263.65	5.55	53.08	235.33	261.82	312.14	229.45	197.44	163.02	179.99	132.27	94.97	229.63
14	ER1d	ExonRegion	0	100.05	140.87	22.11	33.89	97.18	125.20	85.82	21.45	22.18	64.80	176.07	8.07	31.12	174.22	176.58	206.97	145.39	162.27	94.55	105.61	87.45	62.22	137.76
15	ER1e	ExonRegion	0	149.34	204.34	30.92	53.15	140.84	159.68	166.82	36.90	54.54	119.94	180.47	8.24	24.62	146.42	147.68	261.20	189.23	277.94	128.82	150.90	129.38	111.83	166.43
16	E1_Af	NovelBoundary	0	44.23	81.70	19.54	34.29	37.52	34.30	61.70	30.85	52.75	92.27	44.48	13.05	18.51	27.61	27.44	54.26	36.19	189.48	38.59	82.71	41.45	62.70	38.16
17	E1a_E1g	KnownJunction	1	18.23	33.55	23.98	25.50	26.99	17.49	17.05	13.80	20.40	38.25	18.11	43.51	14.61	7.00	43.39	21.87	24.31	55.30	23.44	41.23	24.96	39.43	21.51
18	ER1f	ExonRegion	0	28.15	57.45	23.04	35.78	30.64	25.21	33.69	24.80	45.95	85.04	37.30	27.93	27.91	21.93	32.93	39.98	33.01	162.42	30.10	57.23	36.25	50.21	34.21
19	ER1g	ExonRegion	0	3.54	3.78	1.51	1.72	0.24	0.14	1.05	1.56	2.19	4.13	6.54	2.28	0.31	0.18	3.00	0.29	9.00	5.97	0.98	5.00	5.21	1.10	4.16
20	E1_Ag	KnownBoundary	0	6.74	9.54	4.20	3.70	0.00	0.00	6.58	0.00	3.99	8.19	5.00	0.00	0.00	0.00	0.00	0.00	12.62	13.68	4.33	5.88	8.34	5.20	4.35
21	ER1h	ExonRegion	0	13.36	21.87	32.70	28.02	19.81	24.08	17.33	21.62	26.58	72.93	135.03	28.45	30.21	75.98	44.23	54.12	131.91	68.13	35.49	65.76	97.54	19.29	21.82
22	E1_Db	KnownBoundary	0	0.00	5.39	10.44	3.56	4.24	0.00	4.50	4.76	4.31	7.12	14.27	18.31	0.00	9.77	4.70	15.55	12.90	5.97	4.80	0.00	17.17	0.00	0.00
23	E1b_E1i	KnownJunction	0	5.85	29.34	48.08	49.71	20.97	44.18	23.14	40.17	46.47	138.47	220.32	77.73	78.24	172.17	99.51	101.34	253.95	95.59	52.80	152.95	171.19	33.74	43.62
24	ER1i	ExonRegion	0	4.09	10.48	9.56	3.20	6.00	13.03	10.21	4.08	5.61	10.96	10.94	5.13	2.04	10.98	7.16	15.74	3.80	12.86	11.06	8.97	6.74	7.83	5.85
25	E1_Ah	KnownBoundary	0	3.26	23.81	11.41	4.86	11.21	25.89	20.58	4.31	1.13	11.63	22.53	0.00	12.99	17.01	16.81	15.72	9.54	9.41	16.38	5.37	8.28	11.33	0.00
26	ER1j	ExonRegion	0	7.77	22.66	8.53	5.82	16.26	3.82	17.39	11.01	5.33	13.53	12.67	16.32	11.98	11.05	8.61	12.45	8.89	4.08	11.83	8.59	2.25	11.07	10.52
27	E1_Dc	KnownBoundary	0	3.78	27.63	4.85	0.00	27.08	2.56	26.67	11.87	4.72	11.01	2.58	18.31	13.64	12.07	14.34	15.89	12.53	12.44	9.22	9.08	5.62	15.00	20.74
28	ER1k	ExonRegion	0	14.34	20.35	7.64	9.87	22.60	8.04	19.57	11.21	12.36	15.57	12.22	21.30	16.86	21.66	10.76	15.12	18.99	11.05	8.48	12.76	8.91	20.55	12.31
29	E1_Ai	KnownBoundary	0	14.22	26.51	9.91	14.05	22.50	24.25	24.73	13.80	14.26	20.87	11.06	24.91	13.64	22.78	14.22	15.89	9.07	6.01	4.80	8.82	0.00	16.72	4.27
30	ER1l	ExonRegion	0	28.93	42.90	76.36	84.43	76.98	56.80	80.12	66.82	77.10	164.26	209.41	105.17	148.82	229.26	215.12	268.32	176.44	255.49	128.46	184.04	93.82	149.48	176.38
31	E1_Dd	KnownBoundary	0	0.00	3.09	4.23	3.43	0.00	0.00	8.21	0.00	5.64	1.53	2.47	6.30	8.12	0.00	0.00	0.00	7.85	4.19	0.00	9.01	2.41	0.00	0.00
32	E1d_E2a	KnownJunction	0	41.41	45.26	82.88	109.41	180.90	65.59	108.68	67.81	100.95	187.63	244.22	187.56	177.59	163.58	144.51	277.79	148.01	277.99	113.32	150.84	65.36	149.35	167.99
33	ER1m	ExonRegion	0	0.00	0.89	2.40	0.73	1.71	0.00	6.47	0.00	2.47	2.16	3.89	0.76	2.46	2.44	2.72	0.07	1.49	2.31	0.04	4.87	2.01	0.00	0.00
34	E1_De	NovelBoundary	0	0.00	0.00	0.00	2.06	0.00	0.00	0.00	1.85	2.63	2.34	2.58	0.00	6.82	0.00	0.00	0.00	4.77	0.00	0.00	0.00	8.59	5.20	0.00
35	E1e_E2a	KnownJunction	0	0.00	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	5.99	7.74	0.00	0.00	0.00	0.00	0.00	0.00	1.82	0.00	0.00	3.15	0.00	0.00
36	ER2a	ExonRegion	0	37.19	64.17	100.71	112.41	192.86	123.94	107.18	84.77	85.56	183.88	255.56	231.59	232.91	144.02	167.78	233.61	198.00	191.77	92.67	144.58	91.47	130.94	106.40
37	E2_Da	KnownBoundary	0	66.31	90.12	131.99	136.98	234.13	191.65	173.25	105.85	86.89	200.18	317.40	174.06	194.47	210.25	282.34	297.36	264.24	138.41	132.52	205.30	104.22	159.94	121.56
38	ER2b	ExonRegion	0	52.99	150.50	98.06	118.52	119.89	160.03	160.45	87.31	104.30	199.51	344.62	200.31	240.83	250.38	183.76	177.86	307.71	135.17	116.75	174.49	130.28	129.62	101.41
39	E2_Db	KnownBoundary	0	3.26	3.35	1.42	3.73	0.00	14.93	13.96	4.39	5.38	7.82	10.42	6.30	40.91	4.94	0.00	8.37	0.00	2.36	0.00	14.83	0.00	0.00	0.00
40	E2b_E3a	KnownJunction	0	0.00	9.47	1.83	11.09	7.98	34.92	0.00	10.68	17.88	7.90	10.42	0.00	6.17	4.94	5.19	12.13	3.65	14.59	3.95	24.93	3.15	0.00	3.67
41	E2b_E4a	KnownJunction	0	62.68	191.22	90.09	105.15	115.20	88.30	66.07	85.48	77.83	149.33	233.01	224.77	237.48	230.92	161.07	152.95	247.03	111.47	62.03	110.83	73.95	127.12	83.66
42	ER2c	ExonRegion	0	3.24	7.38	2.54	6.10	10.12	7.85	17.17	7.04	5.67	4.99	2.94	12.12	12.41	3.85	4.28	4.26	0.96	1.62	0.00	6.80	0.64	1.82	1.71
43	E2_Dc	NovelBoundary	0	0.00	0.00	6.86	23.61	7.47	5.79	21.51	11.42	11.69	8.73	4.53	12.45	6.82	0.00	8.90	15.47	4.77	4.27	0.00	5.82	0.00	2.39	12.21
44	E3_Aa	NovelBoundary	0	0.00	3.16	5.80	9.86	27.08	4.49	15.24	4.11	4.57	5.69	2.11	18.76	15.10	0.00	19.04	0.00	0.00	1.66	0.00	7.86	0.00	0.00	4.10
45	ER3a	ExonRegion	0	13.09	17.75	3.36	11.45	14.61	26.12	19.18	16.67	31.45	12.61	12.12	12.51	14.14	8.56	16.37	8.77	19.88	19.21	24.60	41.52	6.38	12.98	5.71
46	E3_Da	NovelBoundary	0	3.11	2.70	4.17	6.56	11.54	2.90	9.80	0.00	10.27	1.67	2.58	6.30	20.62	2.47	14.09	7.86	8.23	7.30	0.00	5.43	0.00	0.00	4.35
47	E3a_E4a	KnownJunction	0	0.00	3.03	0.00	1.66	22.92	10.62	4.46	8.05	18.08	3.95	2.32	6.30	0.00	10.01	4.45	3.59	0.00	10.24	36.61	22.69	3.09	5.02	0.00
48	E4_Aa	NovelBoundary	0	3.26	2.70	15.73	2.06	22.58	23.34	13.20	15.20	9.03	9.56	2.68	0.00	0.00	4.65	11.00	0.00	4.39	1.58	0.00	3.26	5.50	3.12	0.00
49	ER4a	ExonRegion	0	138.25	207.50	126.69	146.63	173.31	89.12	106.16	91.15	111.70	183.00	354.10	314.91	295.31	253.36	202.82	224.11	312.71	159.14	137.81	170.55	128.98	192.93	134.48
50	E4_Da	KnownBoundary	0	376.07	387.17	130.84	170.37	469.44	187.68	329.41	127.21	144.50	190.48	441.95	289.74	392.18	365.59	464.18	353.16	486.96	162.79	261.75	247.93	167.11	280.33	249.94
51	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER4b	ExonRegion	0	111.43	159.73	102.35	103.51	205.52	146.61	173.51	83.81	102.15	138.69	282.51	209.41	259.10	270.89	200.03	177.91	266.85	123.99	140.44	133.15	111.31	145.48	96.60
53	E4_Db	KnownBoundary	0	60.01	112.48	97.36	84.34	199.75	139.86	160.75	55.74	71.82	117.57	213.69	242.78	155.83	192.83	137.83	111.85	148.67	116.19	80.85	116.90	47.69	60.56	49.68
54	ER4c	ExonRegion	0	55.58	113.31	93.14	99.90	182.76	101.61	121.10	73.53	76.49	144.69	237.84	391.71	227.99	269.28	173.41	160.75	166.40	114.92	109.76	115.64	63.82	145.69	96.48
55	E4_Dc	KnownBoundary	0	74.98	158.06	57.48	62.43	153.65	105.62	79.18	63.79	40.10	119.46	206.05	475.81	180.02	331.92	161.69	182.26	126.79	70.14	58.26	98.88	76.30	112.00	78.96
56	ER4d	ExonRegion	0	45.98	108.23	82.13	75.38	121.45	80.43	77.41	70.58	50.47	135.30	214.93	322.18	142.39	257.02	158.92	148.69	119.20	87.97	77.07	86.82	78.54	94.45	77.25
57	E4_Dd	KnownBoundary	0	54.68	78.93	90.12	69.16	118.34	88.98	93.45	44.89	47.89	116.29	186.52	296.95	112.33	187.30	155.51	113.90	120.24	67.53	94.12	89.23	75.62	73.48	80.24
58	ER4e	ExonRegion	0	13.29	30.66	20.04	21.03	19.90	14.69	20.69	21.65	21.25	30.41	22.72	25.26	17.17	25.40	22.26	21.23	19.96	25.95	18.70	19.69	11.41	21.15	14.67
59	E4_De	NovelBoundary	0	5.48	24.14	2.93	31.53	26.83	8.06	16.96	11.09	14.03	15.02	0.00	18.91	6.82	4.77	4.45	4.36	4.77	0.00	0.00	15.66	0.00	0.00	3.84
60	E5_Aa	NovelBoundary	1	1394.91	1028.30	850.38	904.61	806.96	581.37	1080.31	1050.67	995.88	1007.70	221.53	183.81	78.08	141.92	324.87	795.35	500.79	982.03	659.97	822.81	402.73	263.67	756.83
61	ER5a	ExonRegion	0	14.99	17.37	0.00	0.00	17.02	9.02	14.07	0.00	0.00	0.00	2.74	17.26	21.50	17.30	24.94	25.26	34.98	0.00	6.77	27.19	12.46	10.30	24.96