Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RNF7 Gene 0 67.23 70.12 122.16 87.21 79.48 48.29 64.53 61.33 59.09 64.84 121.15 67.48 41.21 92.09 131.45 78.97 78.98 49.85 67.85 52.55 81.01 109.89 63.51 2 273480 Transcript 0 33.00 30.23 81.01 56.01 30.44 22.06 24.95 43.41 39.68 48.19 91.08 34.11 20.45 77.23 119.54 62.76 71.13 45.08 71.67 57.23 85.86 63.96 63.60 3 498828 Transcript 0 2.10 4.52 11.27 7.61 23.21 8.66 6.45 3.21 4.85 3.46 4.75 9.67 11.45 8.77 6.21 4.71 3.25 0.42 2.15 2.82 0.00 8.84 1.35 4 480908 Transcript 0 7.56 0.00 6.59 9.22 0.00 5.34 0.00 6.08 6.63 6.12 16.32 0.00 6.82 0.00 8.90 10.94 0.00 9.87 8.38 5.69 3.03 8.27 0.00 5 393000 Transcript 1 0.00 2.57 29.04 18.38 7.64 0.00 1.85 18.89 22.68 18.43 57.12 12.45 0.00 57.68 86.41 53.32 59.19 23.63 28.71 23.46 51.95 22.47 36.88 6 477012 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 477393 Transcript 0 3.11 0.00 1.83 3.43 3.90 0.00 0.00 0.00 1.79 1.07 5.16 0.00 0.00 7.00 0.00 4.02 4.77 6.14 13.55 3.26 2.59 2.63 3.84 8 392999 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 486377 Transcript 1 560.03 574.17 654.09 694.95 352.12 196.36 488.97 564.15 481.48 496.46 248.69 84.93 286.51 99.83 136.35 863.02 694.90 499.64 419.59 475.42 291.59 131.10 325.49 10 467475 Transcript 0 3.86 4.38 3.63 4.88 14.18 4.10 9.97 2.56 3.50 1.98 0.32 0.89 4.13 2.95 4.03 0.98 1.09 0.53 1.85 0.35 0.73 3.62 1.46 11 ER1a ExonRegion 0 3.50 1.81 0.00 0.00 2.27 10.60 3.80 0.00 0.00 0.00 10.59 0.00 4.28 1.34 6.69 3.62 3.30 1.65 0.00 3.84 5.89 5.12 2.17 12 E1_Ab KnownBoundary 0 12.15 0.00 9.02 0.00 3.74 18.23 15.99 4.07 6.77 2.69 16.85 0.00 0.00 0.00 8.90 7.43 0.00 8.87 0.00 8.12 11.31 5.57 3.50 13 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 25.67 4.42 0.00 0.00 0.00 5.00 0.00 0.00 8.77 33.75 0.00 13.74 0.00 4.52 0.00 0.00 17.51 21.34 14 ER1b ExonRegion 0 3.02 0.73 0.18 0.00 5.35 22.07 5.48 0.00 0.00 0.74 10.01 0.00 0.00 5.22 25.59 4.78 10.26 0.66 2.39 1.60 5.67 16.07 12.27 15 E1_Ad KnownBoundary 0 3.78 0.00 0.00 0.00 4.33 11.07 4.50 0.00 0.00 1.67 5.37 0.00 0.00 0.00 0.00 12.99 4.58 0.00 0.00 0.00 2.97 6.00 4.18 16 E1_Ae KnownBoundary 0 9.93 3.03 0.00 0.00 8.06 10.73 8.61 3.78 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 4.39 3.73 4.42 3.20 5.68 3.12 4.35 17 ER1c ExonRegion 1 13.97 12.40 3.80 0.68 18.20 40.99 23.83 0.00 0.74 2.87 21.94 0.00 0.00 11.29 45.98 15.75 26.90 0.00 8.44 16.70 10.25 31.46 27.02 18 E1_Af KnownBoundary 0 44.08 42.10 22.23 2.06 8.66 85.01 53.35 9.28 7.61 7.84 39.90 0.00 0.00 4.94 18.30 43.15 32.82 11.40 17.60 45.13 36.82 30.74 37.90 19 ER1d ExonRegion 1 29.33 29.92 8.58 2.73 24.08 85.14 48.80 0.00 1.94 5.24 43.90 0.00 0.00 19.26 67.97 30.57 40.55 0.53 14.11 41.34 32.74 38.69 46.99 20 E1_Ag KnownBoundary 1 63.64 83.27 60.76 16.45 67.40 122.26 78.79 9.61 15.97 23.56 60.80 0.00 0.00 55.21 138.33 63.66 70.22 15.79 75.48 33.88 113.05 61.29 92.79 21 ER1e ExonRegion 1 45.58 51.79 24.10 3.82 38.53 111.86 77.14 0.12 5.35 9.79 67.65 0.00 0.00 64.21 164.98 46.96 52.59 3.70 34.61 53.33 65.38 56.39 60.69 22 ER1f ExonRegion 1 98.71 92.81 59.49 13.50 64.22 172.38 118.07 10.21 13.59 24.08 125.81 0.00 0.00 98.78 287.75 109.43 103.83 31.58 81.37 78.53 154.46 83.53 107.85 23 ER1g ExonRegion 1 136.17 88.59 186.78 105.12 87.04 131.00 120.23 69.73 98.31 123.73 348.95 27.57 18.97 167.86 313.27 177.98 212.38 158.13 126.60 143.99 353.02 145.99 157.20 24 E1_Da NovelBoundary 1 8.45 12.50 137.64 77.51 12.65 12.61 6.58 60.75 64.32 86.74 186.63 22.36 6.01 41.44 76.40 48.45 108.84 65.95 62.59 83.48 204.36 78.07 57.53 25 E1a_E2a KnownJunction 0 3.11 0.00 1.83 3.43 3.90 0.00 0.00 0.00 1.79 1.07 5.16 0.00 0.00 7.00 0.00 4.02 4.77 6.14 13.55 3.26 2.59 2.63 3.84 26 E1a_E3a KnownJunction 0 0.00 2.57 29.04 18.38 7.64 0.00 1.85 18.89 22.68 18.43 57.12 12.45 0.00 57.68 86.41 53.32 59.19 23.63 28.71 23.46 51.95 22.47 36.88 27 E1b_E2a KnownJunction 0 0.00 18.55 20.52 6.76 12.48 2.90 2.08 6.41 5.67 15.93 29.85 0.00 5.84 9.42 26.95 28.28 26.93 40.58 30.49 28.57 17.54 3.00 4.18 28 E1b_E3a KnownJunction 1 70.75 77.82 341.35 213.79 26.57 64.57 28.22 148.15 134.84 184.51 466.38 69.32 19.80 376.66 614.75 277.36 336.61 177.71 344.48 250.11 467.10 257.49 288.87 29 E1b_E4a KnownJunction 0 7.56 0.00 6.59 9.22 0.00 5.34 0.00 6.08 6.63 6.12 16.32 0.00 6.82 0.00 8.90 10.94 0.00 9.87 8.38 5.69 3.03 8.27 0.00 30 ER1h ExonRegion 1 64.10 69.14 343.80 219.23 27.90 66.54 31.59 148.15 150.15 203.33 536.79 71.75 36.85 354.75 582.32 314.20 333.39 245.75 329.00 237.69 489.22 260.14 314.64 31 I1 Intron 0 10.08 11.21 6.11 8.93 12.49 7.13 10.00 8.66 8.89 7.84 14.82 23.82 27.00 18.08 14.00 13.50 10.47 3.44 5.33 10.20 6.92 9.59 5.43 32 I1_AR1 ActiveIntronRegion 0 6.07 6.52 2.56 6.11 6.12 3.12 7.89 5.85 7.64 7.55 14.29 15.78 28.90 22.77 13.38 15.26 12.79 5.96 6.07 9.56 13.30 7.64 5.38 33 I1_SR1 SilentIntronRegion 0 8.69 12.75 6.16 8.24 15.06 8.45 11.98 8.53 9.48 7.71 15.74 31.27 32.85 15.88 15.41 11.55 8.01 1.64 5.49 11.06 3.06 10.35 5.00 34 I1_AR2 ActiveIntronRegion 0 10.81 12.69 11.45 13.63 9.16 4.61 6.96 12.36 9.24 9.85 18.54 18.16 16.51 18.47 12.94 15.30 15.86 4.90 5.40 11.82 7.98 10.85 6.33 35 I1_SR2 SilentIntronRegion 0 20.02 15.37 8.31 11.91 21.36 13.71 12.03 11.18 9.63 7.06 10.81 26.97 19.16 13.94 12.92 13.08 7.22 1.54 3.56 8.25 2.70 10.57 5.75 36 E2_Aa NovelBoundary 1 24.08 18.81 14.01 14.45 25.13 13.91 12.14 1.60 12.85 6.31 10.32 54.62 6.82 23.31 8.90 17.26 13.74 4.64 0.00 8.76 11.37 3.12 11.78 37 ER2a ExonRegion 0 11.46 22.38 25.39 20.61 20.61 8.24 20.81 9.81 10.53 18.91 30.61 14.78 14.44 39.09 32.52 23.95 13.23 35.97 20.47 29.96 15.67 13.21 7.61 38 E2_Da KnownBoundary 1 28.97 30.52 11.59 15.88 32.43 16.35 58.96 9.41 4.72 19.50 28.85 24.61 6.82 46.03 19.04 45.54 8.23 26.99 9.60 29.08 25.08 10.47 12.12 39 ER2b ExonRegion 0 27.74 26.96 25.14 31.05 29.03 14.38 35.55 19.31 10.47 19.27 32.20 24.20 19.14 38.05 34.69 29.91 31.83 29.20 25.99 30.98 12.93 23.37 10.96 40 E2_Db KnownBoundary 0 5.85 2.83 5.91 20.88 20.63 14.82 11.84 10.43 6.31 4.03 12.21 12.30 6.01 16.07 9.89 7.69 8.70 3.52 4.80 13.04 0.00 9.00 0.00 41 E2b_E3a KnownJunction 0 13.04 16.90 16.71 27.60 18.25 2.50 12.01 7.27 7.99 13.40 24.59 0.00 0.00 29.49 36.71 31.36 16.83 27.23 34.92 32.79 19.65 2.82 15.71 42 ER2c ExonRegion 0 2.10 4.52 11.27 7.61 23.21 8.66 6.45 3.21 4.85 3.46 4.75 9.67 11.45 8.77 6.21 4.71 3.25 0.42 2.15 2.82 0.00 8.84 1.35 43 E2_Dc NovelBoundary 0 42.08 43.41 8.72 27.60 12.82 10.45 10.82 16.72 8.19 6.39 14.64 0.00 21.26 2.47 9.64 12.56 9.54 6.92 4.33 3.26 5.75 8.08 16.30 44 I2 Intron 0 13.46 5.39 7.55 9.69 11.63 6.42 7.58 9.01 7.42 4.71 15.99 20.04 15.83 11.65 7.84 6.62 5.60 1.86 2.36 2.71 2.34 7.29 4.98 45 I2_SR1 SilentIntronRegion 0 13.52 5.41 7.58 9.73 11.68 6.44 7.61 9.05 7.45 4.73 16.05 20.12 15.89 11.70 7.87 6.65 5.62 1.86 2.37 2.72 2.35 7.32 5.00 46 E3_Aa NovelBoundary 0 10.22 12.76 6.68 11.19 28.69 27.60 9.94 8.83 8.07 4.35 27.06 6.15 13.47 19.13 9.64 3.50 0.00 0.00 4.52 8.18 14.70 10.96 4.35 47 ER3a ExonRegion 1 144.63 120.15 439.04 294.84 94.10 90.31 80.62 212.24 195.25 228.66 554.74 122.49 101.13 468.19 845.78 541.73 331.19 327.67 425.91 287.06 440.65 392.48 492.44 48 E3_Da NovelBoundary 1 2.82 8.35 6.15 4.13 3.48 5.17 9.94 10.64 5.82 1.42 4.84 30.46 13.96 2.24 0.00 0.00 8.88 5.06 3.48 3.26 3.15 6.12 0.00 49 E3a_E4a KnownJunction 0 286.87 209.70 482.83 288.28 162.90 116.24 141.10 235.77 209.81 246.06 532.98 238.73 221.74 471.25 973.49 582.33 347.83 316.54 408.11 262.06 392.60 446.21 466.42 50 I3_SR4 SilentIntronRegion 0 14.48 3.70 3.65 3.10 4.01 1.38 6.53 3.18 0.14 2.27 1.41 11.02 2.24 4.39 10.22 4.59 2.63 0.00 2.82 2.13 0.65 2.32 7.27 51 E4_Aa NovelBoundary 0 33.41 6.05 16.32 3.40 8.40 2.16 12.50 9.28 7.00 1.53 12.69 0.00 0.00 4.24 6.30 11.11 0.00 0.00 4.14 0.00 3.15 3.12 0.00 52 ER4a ExonRegion 0 247.15 295.10 596.80 408.85 335.24 218.67 252.85 293.82 280.78 307.18 657.41 313.80 150.08 495.03 698.36 383.38 405.33 220.17 305.86 219.91 424.08 541.74 287.86 53 E4_Da KnownBoundary 0 145.21 293.76 934.62 700.21 182.09 157.92 144.54 311.14 297.54 319.87 433.64 367.02 161.35 471.66 683.36 318.98 228.52 131.95 342.60 171.17 226.72 741.11 325.15 54 ER4b ExonRegion 0 305.82 340.95 435.30 310.85 275.95 133.59 201.65 189.81 175.26 189.72 315.55 273.10 176.77 212.65 273.44 188.28 191.37 53.58 208.12 96.88 100.54 460.18 154.23 55 E4_Db KnownBoundary 0 1065.08 509.91 485.41 360.29 492.36 235.72 329.59 159.41 131.08 148.60 276.54 284.04 262.32 260.58 407.57 263.69 141.56 36.35 293.37 108.21 84.70 398.26 217.85 56 E4_Dc KnownBoundary 0 6.74 22.43 11.74 12.12 4.16 2.90 18.42 7.11 3.47 7.79 10.06 18.01 6.66 7.71 0.00 4.10 0.00 4.27 12.80 5.69 0.00 16.10 0.00 57 ER4c ExonRegion 0 465.29 235.63 301.48 220.61 234.86 114.46 165.24 101.42 94.55 88.94 162.24 188.26 138.73 161.73 280.77 149.18 86.25 34.27 183.93 62.32 47.27 250.16 126.18 58 E4_Dd KnownBoundary 0 33.56 27.23 36.13 17.35 38.62 22.83 45.49 14.62 11.11 16.68 13.58 0.00 19.15 0.00 4.45 0.00 12.06 4.19 4.05 13.87 2.35 14.63 21.26 59 ER4d ExonRegion 0 103.71 95.58 101.71 77.68 121.75 40.34 91.35 50.99 53.11 49.89 62.82 75.77 56.28 47.91 53.67 26.75 47.86 13.86 43.00 35.11 12.12 79.17 45.52 60 ER4e ExonRegion 1 34.92 30.69 52.38 28.67 64.66 26.39 32.69 34.93 29.33 33.85 30.60 74.25 30.35 34.81 27.02 13.76 22.02 8.86 23.00 25.05 4.86 61.24 17.51 61 E4_Ab KnownBoundary 0 16.23 34.93 55.44 24.91 40.58 31.40 15.59 44.11 30.79 32.31 34.59 61.37 49.67 27.31 27.69 15.98 11.78 2.57 17.22 20.65 6.30 54.80 7.26 62 ER4f ExonRegion 1 24.69 24.01 42.57 27.63 29.79 12.02 31.02 41.78 38.65 32.18 23.86 42.59 20.96 35.16 29.55 28.44 24.87 36.61 34.59 28.53 21.61 33.89 27.29 63 E4_De KnownBoundary 0 1581.61 1538.28 2266.33 2185.90 1426.91 1208.96 2028.04 2319.29 2201.08 2213.96 697.86 410.23 637.30 603.51 498.92 1179.69 1638.43 2383.94 1143.37 1688.63 1367.01 871.72 1297.01 64 E4e_E4c KnownJunction 1 560.03 574.17 654.09 694.95 352.12 196.36 488.97 564.15 481.48 496.46 248.69 84.93 286.51 99.83 136.35 863.02 694.90 499.64 419.59 475.42 291.59 131.10 325.49 65 ER4g ExonRegion 0 46.33 34.30 45.32 42.09 31.28 16.69 37.52 48.56 53.26 46.37 30.02 33.17 43.52 36.23 56.49 67.99 52.28 73.43 43.68 45.60 32.46 25.37 58.58 66 E4_Ac KnownBoundary 1 1036.70 925.10 1039.58 1114.78 839.64 527.54 1035.66 1126.25 1078.23 957.44 220.21 153.50 311.83 107.95 269.11 684.01 637.59 1295.46 527.07 881.23 433.80 486.99 955.21 67 ER4h ExonRegion 1 14.98 21.61 29.32 24.26 37.69 14.76 32.35 18.06 19.27 14.78 14.59 32.74 24.70 23.65 24.90 20.63 17.22 10.53 10.72 21.67 10.97 25.98 13.80 68 E4_Df KnownBoundary 0 3.19 35.85 28.71 22.27 52.38 19.02 19.34 24.48 14.24 19.45 2.63 18.91 6.01 7.89 13.35 27.86 3.74 11.23 17.88 7.99 0.00 39.13 4.35 69 ER4i ExonRegion 1 16.79 23.51 32.83 30.94 35.02 12.05 27.83 17.54 14.07 17.39 6.02 24.12 21.40 9.01 9.01 8.29 8.97 4.95 11.37 12.00 2.11 22.21 6.91 70 E4_Ad KnownBoundary 1 6.89 5.92 39.50 34.73 10.87 17.04 8.13 20.87 12.18 12.30 7.00 36.91 13.15 9.77 4.45 7.86 0.00 10.07 8.47 14.70 11.74 34.90 14.68 71 ER4j ExonRegion 0 11.73 4.40 21.31 28.83 20.12 9.89 15.80 15.67 13.38 13.25 7.63 10.03 5.94 3.82 3.05 6.06 13.66 6.71 8.31 9.26 3.82 21.23 3.68 72 E4_Dg KnownBoundary 0 13.48 8.95 14.49 15.95 36.16 5.00 13.60 9.61 5.79 9.19 4.21 6.90 14.77 0.00 0.00 8.37 4.77 4.56 8.28 4.92 0.00 16.47 0.00 73 E4g_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER4k ExonRegion 0 25.69 13.28 14.21 20.55 22.81 2.06 19.64 11.29 6.59 7.04 2.86 3.82 3.31 5.30 3.26 5.54 3.59 3.89 7.51 6.77 2.73 12.36 7.53 75 E5_Aa NovelBoundary 0 658.19 523.33 378.28 345.98 534.81 305.17 820.37 382.24 304.89 345.07 239.43 176.61 244.95 119.84 242.66 543.19 468.26 485.92 391.82 731.98 245.07 233.30 523.19 76 ER5a ExonRegion 0 7.71 8.75 7.25 9.76 28.36 8.20 19.94 5.12 7.01 3.96 0.64 1.77 8.27 5.91 8.06 1.97 2.19 1.07 3.69 0.70 1.45 7.24 2.92