Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-18H7.1 Gene 0 6.79 10.16 8.91 8.64 18.29 6.01 12.07 5.21 4.71 13.03 3.64 6.24 4.05 8.71 7.07 7.53 6.75 11.00 12.74 13.35 2.36 2.71 5.05 2 484076 Transcript 0 3.14 4.19 1.41 2.08 7.22 2.30 5.80 1.55 2.24 2.22 2.38 3.72 2.99 2.93 5.21 6.38 4.88 4.91 6.02 7.22 3.12 2.33 5.28 3 469070 Transcript 0 4.78 8.37 10.00 8.86 13.85 4.98 9.90 5.19 3.60 14.00 2.94 3.88 1.63 6.81 4.55 4.45 5.15 11.36 12.11 14.69 1.28 2.03 2.78 4 485898 Transcript 0 6.58 10.05 7.24 7.88 14.34 4.54 11.49 4.53 4.20 13.42 2.19 7.69 5.12 8.75 6.25 4.07 3.46 8.20 7.12 7.63 0.87 1.15 1.16 5 ER1a ExonRegion 0 0.73 0.70 1.26 0.01 0.96 0.04 0.55 0.93 0.01 5.39 2.00 0.00 0.06 1.84 2.23 2.05 1.14 5.49 10.98 6.66 1.52 0.72 3.27 6 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E2_Aa NovelBoundary 0 11.34 2.89 1.12 3.70 10.44 5.79 6.58 2.55 1.79 13.86 2.68 0.00 0.00 2.12 13.35 8.20 4.49 8.87 8.09 14.76 2.97 2.33 0.00 8 ER2a ExonRegion 0 1.34 4.02 5.27 1.95 4.83 2.48 3.54 4.29 3.11 12.20 2.22 1.01 0.00 5.95 3.04 4.20 4.86 13.91 11.70 7.28 1.56 1.47 4.12 9 E2_Ab KnownBoundary 0 3.19 12.10 11.74 5.29 18.68 11.41 4.50 7.80 4.20 25.68 0.00 0.00 0.00 7.53 8.90 0.00 4.77 25.99 4.24 11.63 0.00 0.00 0.00 10 ER2b ExonRegion 0 4.03 10.18 5.20 1.93 10.43 4.68 6.94 4.58 5.18 13.86 1.97 2.28 0.06 13.63 4.70 11.27 2.94 17.49 12.89 10.14 1.52 1.44 8.16 11 E2_Da NovelBoundary 0 7.33 12.70 9.43 7.16 7.72 0.00 2.21 6.65 1.24 7.66 0.00 0.00 0.00 7.06 0.00 0.00 3.65 20.69 20.99 6.52 0.00 0.00 4.27 12 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E4b KnownJunction 0 0.00 2.76 1.77 1.96 0.00 0.00 2.08 0.00 0.00 5.86 0.00 0.00 0.00 2.06 0.00 0.00 0.00 9.49 0.00 8.69 0.00 0.00 0.00 14 I2 Intron 0 4.14 8.31 9.41 14.08 17.12 3.91 4.71 6.41 7.52 10.33 4.81 2.58 5.78 13.07 2.91 8.98 7.63 10.46 12.45 10.96 1.17 3.70 8.35 15 I2_AR1 ActiveIntronRegion 0 1.59 5.91 9.60 11.70 18.94 5.48 4.35 5.89 7.24 9.30 2.91 1.17 4.24 16.83 2.36 10.29 7.32 11.73 11.25 12.45 0.72 2.88 11.35 16 I2_SR1 SilentIntronRegion 0 8.14 13.73 11.72 21.75 17.95 1.83 6.80 7.74 10.51 14.22 8.40 5.14 6.35 9.39 4.87 9.38 9.97 10.45 18.95 11.26 2.18 5.99 6.52 17 E3_Aa NovelBoundary 0 0.00 13.02 16.71 23.97 34.80 0.00 12.06 8.83 12.44 17.65 2.42 57.77 0.00 17.13 0.00 3.50 18.61 14.72 7.91 22.37 0.00 5.69 4.01 18 ER3a ExonRegion 0 4.57 8.79 8.61 12.12 29.93 3.92 7.90 5.49 7.15 8.61 6.68 10.64 8.27 4.49 5.83 11.94 5.71 15.11 12.39 15.09 1.90 6.29 7.34 19 E3_Da NovelBoundary 0 21.86 29.47 18.66 23.37 44.74 10.16 4.50 13.76 7.18 18.56 2.63 5.70 0.00 20.19 0.00 4.36 18.79 15.67 13.65 10.35 3.15 2.76 15.62 20 E3a_E4b KnownJunction 0 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 2.57 0.00 3.26 0.00 0.00 0.00 21 I3 Intron 0 7.92 23.39 12.65 15.34 33.56 6.99 16.24 9.99 7.01 14.69 2.28 12.79 7.70 6.47 4.69 4.74 2.06 3.89 7.73 9.58 0.61 3.18 2.03 22 I3_AR1 ActiveIntronRegion 0 11.04 28.65 18.01 20.60 56.55 6.46 18.47 11.25 10.89 19.02 2.18 16.15 5.56 5.03 5.39 4.19 1.40 2.73 9.87 11.69 0.62 4.99 1.24 23 I3_SR2 SilentIntronRegion 0 7.43 23.09 11.32 15.52 14.36 9.09 18.86 13.30 4.94 15.88 3.59 11.52 11.73 10.84 4.40 5.52 2.73 7.21 7.89 10.10 0.91 2.15 3.64 24 E4_Aa NovelBoundary 0 30.23 40.26 42.40 51.11 57.39 18.17 48.09 57.91 52.08 43.70 7.11 16.96 25.65 11.60 21.26 38.37 30.01 13.72 20.52 37.90 8.59 5.76 4.18 25 ER4a ExonRegion 0 13.16 20.10 14.48 15.75 28.69 9.08 20.99 9.06 8.39 25.18 4.39 15.39 10.24 17.51 12.50 8.13 6.93 16.41 14.23 15.27 1.74 2.31 2.32 26 E4_Ab KnownBoundary 0 12.89 21.84 23.21 25.40 95.50 13.34 60.19 9.16 10.97 28.45 4.84 6.30 0.00 12.01 0.00 10.77 24.31 16.54 9.32 15.15 0.00 0.00 0.00 27 ER4b ExonRegion 0 15.60 13.68 18.13 23.06 65.65 19.27 24.30 8.00 9.54 28.74 4.00 3.14 5.53 15.00 14.03 12.21 17.68 27.99 12.70 19.41 0.00 2.05 5.39 28 E4_Da KnownBoundary 0 7.19 9.14 6.39 11.15 51.61 0.00 10.25 2.26 4.28 11.39 4.84 0.00 0.00 5.12 0.00 10.77 3.93 13.89 0.00 15.53 0.00 2.82 0.00 29 E4_Db KnownBoundary 0 10.82 5.92 3.37 12.85 12.05 0.00 3.97 5.05 1.48 12.22 0.00 7.65 0.00 12.01 4.45 6.58 4.21 4.31 7.91 12.08 0.00 8.57 11.95 30 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER4c ExonRegion 0 13.55 13.83 14.70 22.90 54.05 2.57 9.27 12.44 5.19 25.46 5.41 8.66 9.38 18.19 14.51 20.80 7.92 24.76 17.84 22.13 0.00 8.33 8.81 32 ER4d ExonRegion 0 13.00 18.32 22.96 22.67 36.71 12.47 24.09 11.29 7.70 23.95 6.59 10.63 4.88 12.42 10.60 9.16 10.60 10.68 24.63 28.08 2.28 4.63 4.21 33 E4_Dc NovelBoundary 0 42.01 39.86 28.18 34.00 29.54 24.25 59.13 16.88 11.31 36.48 7.84 5.70 19.64 18.48 8.90 8.03 12.06 15.96 56.19 39.44 3.09 5.45 0.00 34 E5_Aa NovelBoundary 0 6.74 0.00 5.80 7.69 15.37 0.00 6.14 4.81 1.79 12.76 0.00 0.00 0.00 0.00 4.45 0.00 4.68 4.19 17.98 11.57 0.00 6.25 3.67 35 ER5a ExonRegion 0 1.57 0.09 0.14 1.46 7.80 0.03 4.01 0.00 0.18 0.16 0.00 7.98 2.01 5.48 5.72 2.17 2.40 0.13 6.96 0.06 0.00 0.06 2.22 36 E5_Da NovelBoundary 0 36.30 20.79 1.80 14.02 53.82 18.85 47.30 9.78 14.35 17.25 16.74 0.00 13.47 6.83 6.06 32.47 21.69 16.46 28.89 17.83 2.97 0.00 11.61 37 E5a_E6a KnownJunction 0 0.00 0.00 0.00 1.23 0.00 0.00 0.00 6.08 3.67 3.47 0.00 0.00 0.00 0.00 9.02 0.00 0.00 4.06 0.00 0.00 2.53 0.00 0.00 38 E6_Aa NovelBoundary 0 13.41 15.72 14.67 8.09 18.59 17.89 46.59 13.02 8.04 3.55 2.53 12.45 26.13 11.89 19.90 54.00 44.23 24.37 51.39 30.49 23.23 10.41 60.18 39 ER6a ExonRegion 0 24.25 31.67 3.70 4.24 32.03 19.05 44.64 2.68 11.37 4.40 15.09 12.15 19.10 16.57 28.95 43.28 39.51 21.44 29.84 46.44 25.21 16.24 39.64 40 E6_Da NovelBoundary 0 12.45 8.95 3.49 0.00 8.06 0.00 2.21 0.00 0.00 4.75 2.32 0.00 0.00 0.00 0.00 8.12 0.00 0.00 0.00 4.99 0.00 2.76 4.18 41 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER7a ExonRegion 0 0.24 0.68 0.41 0.45 1.50 0.00 0.89 0.29 0.00 0.18 0.00 1.22 0.44 0.90 0.33 0.00 0.00 0.31 0.00 0.71 0.00 0.00 0.33