Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LSAMP Gene 0 2.61 16.14 4.54 2.97 7.36 4.75 17.23 9.58 85.53 8.02 15.03 1.27 1.25 1.58 1.63 0.63 2.50 35.86 3.65 15.23 111.63 30.36 52.98 2 474851 Transcript 0 0.72 1.23 1.17 1.00 0.37 0.12 1.20 1.22 1.03 0.70 0.00 1.44 2.05 1.19 0.79 0.80 0.89 1.34 0.64 1.20 0.30 0.14 0.99 3 490035 Transcript 0 3.19 18.83 2.73 2.07 8.26 3.61 16.15 11.01 65.12 8.79 16.09 0.00 0.18 1.24 0.00 1.58 0.00 23.28 3.16 16.11 133.62 23.99 53.50 4 333617 Transcript 0 2.59 23.43 3.10 3.65 14.74 4.20 19.57 7.99 101.26 5.86 9.65 0.97 1.50 1.07 0.35 0.25 1.43 13.20 2.17 13.41 29.54 27.93 39.45 5 498645 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 2.11 0.00 0.00 4.62 16.44 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.80 6 473171 Transcript 0 0.21 0.99 0.00 0.43 0.50 0.00 3.22 0.00 0.78 0.00 0.00 0.00 0.24 0.21 0.00 0.00 2.25 0.59 0.00 0.97 1.15 0.39 0.00 7 475403 Transcript 0 0.00 0.44 0.00 0.00 0.00 0.40 1.15 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 1.92 0.05 0.00 8 IG50_AR20 ActiveIntergenicRegion 0 0.00 2.37 0.00 0.00 0.00 0.00 3.03 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.12 5.24 0.00 2.13 4.13 0.00 1.59 9 IG50_AR19 ActiveIntergenicRegion 0 0.22 6.34 0.39 0.00 0.00 0.19 9.52 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 15.97 6.20 0.34 1.90 0.88 0.00 0.85 10 ER1a ExonRegion 0 2.86 4.94 2.35 2.69 1.44 0.49 4.25 4.77 2.95 2.79 0.00 5.77 8.11 4.77 3.18 3.21 3.55 5.20 2.58 3.97 1.19 0.56 3.96 11 E1_Da NovelBoundary 0 3.26 5.85 6.00 3.76 0.00 0.00 19.39 4.31 8.33 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 8.19 3.26 0.00 0.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 2.19 1.23 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 0.03 0.00 0.15 0.09 0.02 0.00 0.57 0.12 0.12 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.18 0.00 0.82 0.00 0.00 0.00 14 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Aa NovelBoundary 0 0.00 0.00 1.48 0.00 0.00 0.00 5.92 0.00 8.97 1.58 2.37 0.00 0.00 0.00 0.00 0.00 0.00 8.42 0.00 2.49 16.62 2.69 34.66 16 ER3a ExonRegion 0 0.45 4.32 2.50 1.45 3.53 2.21 13.19 7.03 30.62 6.19 16.23 0.00 0.36 0.00 0.00 0.00 0.00 27.07 2.37 10.16 127.99 23.18 55.27 17 E3_Ab KnownBoundary 0 3.41 12.37 5.26 1.70 8.23 0.00 16.47 7.11 43.29 6.85 16.53 0.00 0.00 0.00 0.00 0.00 0.00 42.12 0.00 2.75 197.69 56.03 49.51 18 E3_Ac KnownBoundary 0 3.26 3.16 0.00 0.00 7.56 11.58 14.97 6.70 43.55 5.78 20.27 0.00 0.00 0.00 0.00 0.00 0.00 21.51 0.00 9.20 127.38 36.86 39.01 19 ER3b ExonRegion 0 3.33 5.59 3.41 1.12 5.64 7.47 14.14 9.01 56.99 7.74 24.16 0.00 0.00 0.00 0.00 0.00 0.00 40.91 1.25 7.45 178.58 49.63 50.03 20 ER3c ExonRegion 0 6.73 11.00 3.55 1.49 15.81 7.66 16.36 12.21 89.47 10.98 14.62 0.00 0.00 1.06 0.00 0.00 1.35 59.08 5.80 22.39 195.99 21.64 73.57 21 E3a_E4a KnownJunction 0 3.26 10.85 9.55 4.13 20.20 14.93 21.20 23.58 128.67 16.90 14.11 0.00 0.00 0.00 0.00 0.00 4.68 90.16 0.00 29.08 279.23 27.80 139.74 22 I3_AR3 ActiveIntronRegion 0 0.00 6.28 0.34 0.37 2.71 1.69 18.38 2.39 11.48 0.17 0.72 0.00 0.00 0.00 0.00 0.00 0.91 1.04 0.29 0.24 0.61 0.00 3.25 23 I3_AR4 ActiveIntronRegion 0 0.94 5.42 4.39 0.36 2.15 0.82 16.64 2.48 8.60 1.84 1.03 0.00 0.00 0.00 0.00 0.00 0.29 0.97 0.57 0.95 1.18 0.00 0.42 24 I3_AR14 ActiveIntronRegion 0 0.00 2.59 0.00 0.99 1.16 2.55 18.69 2.08 8.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.72 0.00 1.54 1.57 25 Ix Intron 0 10.09 11.63 0.00 1.94 7.65 6.12 32.81 2.46 4.40 0.81 0.92 0.00 0.00 0.00 0.00 2.83 0.00 0.88 0.00 1.01 0.00 0.00 7.00 26 Ix_SR1 SilentIntronRegion 0 10.28 11.85 0.00 1.97 7.80 6.23 33.44 2.50 4.48 0.83 0.94 0.00 0.00 0.00 0.00 2.89 0.00 0.90 0.00 1.03 0.00 0.00 7.13 27 Ix Intron 0 1.28 5.01 1.03 2.30 4.00 0.52 16.89 6.34 16.50 1.73 0.23 0.00 0.31 0.00 0.00 0.36 0.13 0.71 0.13 1.29 1.25 0.42 1.90 28 Ix_SR1 SilentIntronRegion 0 1.28 5.01 1.03 2.30 4.00 0.52 16.91 6.35 16.51 1.73 0.23 0.00 0.31 0.00 0.00 0.36 0.13 0.71 0.13 1.29 1.25 0.42 1.90 29 I3_AR4 ActiveIntronRegion 0 0.00 15.43 0.94 1.36 0.00 0.00 16.59 3.46 11.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 30 I3_AR23 ActiveIntronRegion 0 7.47 23.38 9.98 3.70 9.14 1.67 23.06 9.09 19.27 1.75 0.00 0.00 0.88 0.00 0.00 1.69 0.00 1.88 0.37 0.97 2.76 1.19 5.01 31 I3_SR16 SilentIntronRegion 0 4.34 25.46 7.12 5.43 16.99 1.24 20.26 8.12 23.49 2.34 0.65 0.00 0.00 0.00 0.00 0.00 0.00 4.05 0.72 0.96 2.56 1.60 1.98 32 I3_AR24 ActiveIntronRegion 0 4.52 20.00 6.82 7.93 5.67 0.00 17.37 4.15 21.16 3.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.03 0.00 1.59 1.09 1.87 0.00 33 I3_AR25 ActiveIntronRegion 0 3.25 18.37 9.53 5.79 6.35 0.00 14.39 8.27 22.78 3.95 1.85 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.10 2.49 1.52 1.66 2.53 34 ER4a ExonRegion 0 2.71 19.22 8.45 4.11 10.23 11.44 27.05 19.88 146.32 15.15 30.17 0.78 0.00 0.29 0.56 0.65 7.07 95.04 6.11 30.80 274.93 53.10 119.99 35 E4a_E6a KnownJunction 0 3.19 8.68 4.32 6.96 20.97 14.20 25.66 16.31 146.41 22.91 27.22 0.00 0.00 0.00 0.00 0.00 13.37 87.84 6.96 27.42 275.65 63.87 124.72 36 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 1.69 0.00 0.00 1.41 4.82 0.00 0.00 0.02 0.00 0.00 0.00 0.00 1.60 37 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 7.83 28.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER6a ExonRegion 0 1.78 10.35 9.83 6.48 9.34 10.67 22.60 13.88 173.94 17.89 34.41 1.13 0.00 1.13 3.75 1.20 10.30 99.21 3.69 33.28 253.78 63.83 117.93 39 E6a_E7a KnownJunction 0 0.00 14.93 3.49 1.80 15.37 5.79 18.81 15.69 186.17 13.38 32.75 6.00 0.00 0.00 6.30 0.00 9.54 71.38 14.40 51.39 295.11 56.82 102.09 40 ER7a ExonRegion 0 2.43 16.62 3.12 1.53 16.32 5.04 26.55 10.33 171.99 15.14 46.87 7.47 0.00 6.94 9.50 0.00 7.34 78.16 15.05 34.89 295.30 62.40 98.45 41 E7_Ab KnownBoundary 0 7.56 15.92 2.96 1.50 14.43 7.72 36.30 12.36 168.95 18.10 46.64 12.60 0.00 17.66 21.51 0.00 9.44 75.65 20.89 26.85 274.23 77.64 91.85 42 ER7b ExonRegion 0 3.70 19.80 9.38 4.63 7.63 6.29 25.99 12.46 187.50 21.24 35.36 3.01 0.00 4.68 5.71 0.00 8.30 105.46 7.64 23.00 283.19 65.71 94.53 43 E7a_E8a KnownJunction 0 0.00 34.99 9.11 8.96 15.79 6.98 39.88 22.22 195.72 18.56 49.33 0.00 0.00 2.47 8.90 0.00 4.77 112.05 14.02 36.24 324.39 79.97 102.35 44 ER8a ExonRegion 0 2.43 28.99 7.55 3.77 5.42 9.41 37.65 13.43 150.96 13.37 26.33 0.00 2.40 4.32 3.47 1.38 4.87 66.74 6.95 28.28 275.25 48.05 71.45 45 E8_Ab KnownBoundary 0 0.00 14.47 8.07 4.79 0.00 28.85 69.07 13.31 166.32 20.42 24.64 0.00 0.00 7.18 19.41 3.85 8.70 57.04 3.67 21.92 199.05 37.05 74.01 46 ER8b ExonRegion 0 4.34 25.86 7.01 3.60 4.39 6.86 40.97 18.79 143.05 20.03 30.33 4.88 3.73 3.66 3.87 0.99 4.66 65.90 10.05 21.99 210.65 38.41 63.70 47 E8a_E9a KnownJunction 0 10.59 46.11 6.86 3.50 7.05 2.27 27.60 22.51 132.43 20.01 44.43 12.60 5.84 2.24 0.00 0.00 0.00 63.51 8.38 36.43 224.62 47.70 86.64 48 ER9a ExonRegion 0 2.71 17.33 11.58 2.74 12.38 5.47 16.10 14.67 124.08 12.40 25.22 1.62 0.48 3.67 5.86 0.08 0.00 77.99 11.04 22.17 198.83 38.09 89.97 49 E9_Da KnownBoundary 0 7.41 21.58 12.83 5.73 8.66 16.81 14.88 14.75 124.36 15.55 10.37 0.00 0.00 2.47 0.00 0.00 0.00 39.92 0.00 21.35 181.69 35.76 63.08 50 ER9b ExonRegion 0 5.69 18.45 8.23 4.02 8.47 9.56 20.84 12.63 106.72 12.45 13.44 0.00 3.13 2.09 0.00 2.97 1.34 34.98 0.83 21.43 159.45 33.04 47.27 51 E9_Db KnownBoundary 0 3.78 3.29 0.00 0.00 0.00 0.00 6.62 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 4.49 1.74 0.00 3.26 5.99 0.00 0.00 52 E9b_E10a KnownJunction 0 0.00 0.00 4.58 0.00 0.00 0.00 9.89 0.00 0.00 0.00 7.84 0.00 0.00 2.47 0.00 0.00 0.00 4.31 0.00 0.00 6.24 0.00 0.00 53 E9b_E13a KnownJunction 0 5.93 33.35 2.96 2.70 12.99 5.00 19.12 14.99 99.62 11.39 15.95 0.00 0.00 2.47 0.00 3.16 0.00 19.48 3.95 22.05 139.25 24.80 51.73 54 ER9c ExonRegion 0 0.21 0.99 0.00 0.43 0.50 0.00 3.22 0.00 0.78 0.00 0.00 0.00 0.24 0.21 0.00 0.00 2.25 0.59 0.00 0.97 1.15 0.39 0.00 55 ER10a ExonRegion 0 0.00 0.00 2.69 0.00 0.00 0.00 4.19 0.00 0.34 0.00 4.72 0.00 0.00 0.59 0.00 0.00 0.00 2.72 0.00 0.00 1.41 0.29 0.00 56 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER11a ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 2.41 0.00 0.15 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.84 0.00 0.00 0.13 0.00 0.00 58 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E11a_E13a KnownJunction 0 0.00 0.00 1.69 0.00 6.96 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER12a ExonRegion 0 0.00 1.33 0.00 0.00 0.00 1.20 3.46 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 5.76 0.16 0.00 61 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E13_Aa NovelBoundary 0 0.00 0.00 1.83 0.00 7.81 0.00 2.12 2.34 4.77 1.48 0.00 0.00 0.00 0.00 5.56 0.00 0.00 14.34 0.00 2.75 2.78 2.51 0.00 63 ER13a ExonRegion 0 5.54 49.11 5.99 3.51 10.07 4.34 27.92 10.92 114.36 8.62 11.49 0.62 0.00 2.76 3.24 1.22 0.00 40.32 6.76 14.07 112.75 35.75 52.35 64 E13_Da KnownBoundary 0 6.59 61.77 7.78 1.56 20.37 5.79 59.49 14.91 88.77 4.03 6.84 6.15 0.00 0.00 4.45 0.00 0.00 6.72 0.00 14.57 35.89 48.13 42.34 65 ER13b ExonRegion 0 8.59 37.10 10.40 6.33 11.75 8.65 20.40 19.16 153.28 7.37 9.96 3.52 2.01 2.37 1.59 1.67 1.76 14.37 3.57 21.86 23.76 54.88 44.99 66 E13_Db KnownBoundary 0 13.48 91.17 13.60 6.56 10.95 0.00 22.88 25.38 222.28 12.11 16.79 0.00 6.98 0.00 0.00 0.00 0.00 12.06 0.00 22.37 27.49 36.25 45.67 67 ER13c ExonRegion 0 5.17 46.85 4.51 7.30 22.52 8.40 36.97 15.99 202.52 11.73 19.31 1.95 3.00 2.14 0.70 0.51 2.86 26.40 4.33 26.82 59.09 55.87 78.91 68 IG49_AR8 ActiveIntergenicRegion 0 3.75 22.31 7.34 5.81 18.60 7.81 28.87 8.86 101.20 7.16 9.42 1.46 1.45 1.69 0.37 0.20 0.90 33.31 3.58 15.51 95.10 18.60 51.03 69 IG49_AR7 ActiveIntergenicRegion 0 8.23 82.48 13.45 13.85 36.56 18.17 53.26 25.55 208.26 11.35 9.12 1.44 0.70 0.87 0.80 0.46 0.77 23.24 3.41 18.37 41.68 35.31 38.42 70 IG49_AR3 ActiveIntergenicRegion 0 0.00 1.60 2.45 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.79 8.92 7.12 1.13