Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CEP97 Gene 0 31.34 103.59 32.21 49.69 69.61 55.05 73.22 43.46 53.02 63.69 24.47 39.69 36.23 24.63 18.71 26.84 33.88 48.78 34.02 75.09 10.47 25.48 21.71 2 341893 Transcript 0 3.25 2.65 0.61 0.00 1.33 0.00 0.25 1.09 0.79 0.68 0.15 0.14 0.59 0.70 1.12 0.34 0.30 0.13 0.36 0.08 0.00 0.08 0.11 3 489172 Transcript 0 12.32 8.38 5.77 12.11 12.90 3.45 10.66 5.56 3.15 6.89 1.92 1.77 4.45 1.22 1.59 1.80 2.81 4.12 2.54 8.23 1.34 0.81 1.36 4 327230 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 494050 Transcript 0 0.00 20.72 2.96 0.00 11.97 7.84 14.93 2.38 9.14 4.27 10.32 6.30 0.00 7.48 5.44 4.19 12.16 44.81 6.96 23.46 2.66 2.82 4.35 6 465011 Transcript 0 2.16 4.95 2.88 5.39 14.19 0.48 4.23 2.44 3.53 11.46 2.43 1.22 0.31 1.59 1.64 0.71 2.37 7.72 12.83 12.56 1.44 0.68 0.38 7 467655 Transcript 0 0.00 0.00 0.00 0.00 4.50 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 462076 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 2.26 1.24 0.00 0.00 2.66 0.00 0.50 0.45 1.58 1.37 0.29 0.27 1.18 1.41 2.24 0.68 0.59 0.26 0.73 0.16 0.00 0.16 0.22 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 1.48 1.67 0.00 0.00 0.00 2.47 0.00 0.00 4.49 1.99 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 7.45 17.53 0.00 0.68 16.11 13.17 22.19 1.73 2.40 1.70 6.80 0.00 0.00 9.39 1.74 6.95 15.78 6.36 10.13 19.57 2.69 5.63 5.46 12 E1_Ac KnownBoundary 0 16.89 26.11 0.00 0.00 33.45 28.28 35.15 0.00 0.00 0.00 2.68 0.00 0.00 7.42 0.00 8.20 23.56 2.11 14.12 12.21 6.18 6.00 0.00 13 E1_Ad KnownBoundary 0 0.00 0.00 1.83 4.06 4.33 2.90 4.50 5.01 1.74 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 0.00 0.00 0.00 3.12 0.00 14 E1_Ae KnownBoundary 0 2.74 3.29 1.71 6.06 4.24 5.28 13.43 10.51 8.62 11.17 2.58 0.00 0.00 0.00 0.00 7.01 4.58 2.11 0.00 29.40 0.00 0.00 0.00 15 ER1c ExonRegion 1 11.99 58.97 0.00 1.36 34.78 34.84 62.23 0.43 2.88 1.15 25.13 0.00 0.00 28.83 5.80 26.75 49.51 14.17 28.67 74.47 8.81 16.67 23.49 16 ER1d ExonRegion 1 7.76 58.30 0.00 1.36 34.78 34.23 60.46 0.00 2.47 1.15 25.13 0.00 0.00 27.61 5.80 26.75 49.51 12.93 28.67 71.63 8.81 16.67 23.49 17 ER1e ExonRegion 0 2.91 22.07 0.06 1.03 8.33 10.19 21.31 0.65 2.45 1.77 9.98 17.81 5.31 7.30 0.57 10.48 18.18 5.82 8.93 30.10 3.00 5.23 9.39 18 E1a_E2a KnownJunction 1 3.63 6.71 0.00 1.37 4.33 2.50 11.08 2.22 3.04 4.38 2.68 37.21 20.45 0.00 0.00 3.33 0.00 4.10 0.00 6.39 0.00 0.00 0.00 19 ER2a ExonRegion 1 2.89 20.44 15.87 20.69 18.64 10.49 12.24 26.47 34.53 29.41 29.26 29.67 13.32 33.06 8.95 31.82 53.37 64.77 34.62 97.65 13.22 20.37 23.14 20 E2a_E3a KnownJunction 0 3.78 28.88 18.07 15.62 50.76 30.72 43.41 35.41 49.68 36.24 16.00 36.91 20.29 28.19 22.25 27.94 35.53 121.46 12.80 122.59 12.60 18.61 26.46 21 ER3a ExonRegion 0 3.05 45.27 13.09 18.58 43.18 63.02 83.02 26.06 50.74 45.19 27.08 45.51 23.98 25.32 7.98 33.94 50.49 71.39 25.41 93.01 22.66 23.82 14.28 22 E3_Ab KnownBoundary 0 0.00 87.81 14.67 27.70 44.57 47.08 102.10 20.87 48.38 40.99 55.96 18.16 31.98 21.07 0.00 21.02 44.04 47.05 33.32 118.44 11.68 23.64 15.37 23 ER3b ExonRegion 0 6.65 88.68 12.08 21.04 30.41 31.79 45.59 21.54 49.96 53.05 45.52 56.59 36.79 33.08 17.16 33.11 60.86 39.04 30.42 117.41 17.23 33.13 12.70 24 E3_Da NovelBoundary 0 3.78 17.30 4.67 17.58 7.39 10.56 10.78 7.39 13.19 20.44 0.00 0.00 6.82 2.47 0.00 0.00 4.30 4.68 13.18 32.98 2.84 0.00 4.35 25 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 12.90 0.00 0.00 0.00 1.79 8.86 2.68 0.00 0.00 0.00 0.00 0.00 0.00 5.97 11.95 4.86 0.00 0.00 0.00 26 E3a_E4b KnownJunction 0 3.48 43.94 9.91 13.55 26.40 14.03 30.74 29.41 39.64 53.24 47.22 18.46 20.62 41.38 15.82 35.38 59.19 48.46 26.92 121.00 24.59 30.74 13.91 27 E3a_E5a KnownJunction 0 0.00 4.93 0.00 1.50 0.00 2.90 0.00 2.42 9.49 10.29 0.00 0.00 0.00 0.00 4.45 4.36 11.69 12.06 0.00 12.14 0.00 0.00 0.00 28 E4_Aa NovelBoundary 0 11.34 18.29 5.97 19.31 24.87 5.17 37.10 11.75 7.44 4.38 2.68 6.15 19.64 2.47 4.45 4.19 0.00 4.27 0.00 24.74 0.00 0.00 13.06 29 E4_Ab NovelBoundary 0 13.56 16.77 7.57 28.20 36.25 11.13 23.85 4.44 10.53 14.00 5.37 5.70 0.00 2.47 4.45 0.00 8.60 7.75 13.74 25.12 3.09 0.00 0.00 30 ER4a ExonRegion 0 4.33 9.90 5.75 10.78 15.47 0.96 8.46 4.88 5.26 14.06 2.19 2.45 0.61 3.18 3.28 1.42 4.74 9.48 13.71 20.26 2.87 1.36 0.77 31 ER4b ExonRegion 1 22.30 56.32 12.84 21.46 45.83 27.20 62.95 30.22 39.47 59.26 48.05 41.62 27.86 36.66 9.80 44.29 66.51 65.44 33.43 119.95 18.50 33.40 25.53 32 E4_Da NovelBoundary 0 3.19 34.01 1.24 18.15 3.74 0.00 17.49 12.36 8.48 7.87 4.32 0.00 0.00 0.00 0.00 7.60 0.00 6.26 0.00 19.30 0.00 0.00 0.00 33 E4a_E5a KnownJunction 0 7.26 27.17 7.63 13.38 31.41 28.22 46.59 27.64 40.77 74.06 51.28 43.36 67.20 34.20 0.00 17.26 52.55 75.49 30.78 114.67 15.81 28.11 6.57 34 I4 Intron 0 10.02 22.41 7.62 17.13 13.24 7.81 16.75 12.75 13.94 9.42 2.00 2.98 5.57 0.99 2.96 3.71 4.12 4.16 5.21 18.22 0.38 1.97 1.90 35 I4_AR1 ActiveIntronRegion 0 7.44 15.09 11.00 22.71 11.00 7.81 17.79 8.77 15.01 10.95 2.08 1.77 2.48 0.82 4.72 6.98 5.93 11.61 5.43 19.26 0.00 2.91 2.68 36 I4_SR2 SilentIntronRegion 0 11.89 27.47 8.12 19.42 10.32 7.08 15.88 17.07 17.29 10.90 2.27 3.35 6.36 1.29 2.63 3.49 4.43 2.70 5.88 19.63 0.55 1.75 1.72 37 I4_AR2 ActiveIntronRegion 0 12.45 23.93 3.58 12.45 28.87 13.04 22.72 10.74 8.57 5.87 1.42 3.68 9.09 0.66 2.93 1.46 1.62 2.49 5.47 16.68 0.54 1.53 1.44 38 E5_Aa NovelBoundary 0 10.22 36.31 31.19 65.89 22.67 9.48 57.01 20.66 34.87 31.00 4.84 0.00 19.64 4.71 0.00 4.36 13.46 19.36 3.67 32.15 0.00 5.57 4.35 39 ER5a ExonRegion 1 7.70 48.50 14.38 34.36 43.28 45.96 56.40 35.62 55.29 70.85 50.26 57.50 56.98 41.64 11.96 34.70 64.69 98.03 45.49 130.51 15.16 36.02 33.59 40 E5a_E6a KnownJunction 0 10.37 34.66 20.70 32.63 42.28 66.95 73.49 41.85 52.31 68.90 49.33 61.82 59.09 28.96 14.83 51.27 53.39 116.82 25.60 128.98 28.11 15.80 23.65 41 E6_Aa NovelBoundary 0 0.00 2.96 0.00 3.90 0.00 2.16 6.14 0.00 0.00 1.13 0.00 0.00 0.00 0.00 10.38 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 42 ER6a ExonRegion 1 7.68 69.49 19.90 38.34 40.59 34.53 60.62 41.68 64.63 65.21 45.78 67.81 33.44 43.59 10.62 46.07 58.11 124.28 43.31 131.90 28.43 25.42 42.94 43 E6_Ab KnownBoundary 1 14.08 89.59 18.51 29.40 38.79 54.80 104.40 32.53 63.74 64.50 52.70 38.11 0.00 48.09 8.90 19.74 48.25 86.10 35.20 108.79 30.95 31.29 39.10 44 ER6b ExonRegion 1 9.89 77.65 15.73 23.83 41.19 65.97 69.46 32.44 55.15 52.73 45.63 27.59 24.65 43.55 6.48 27.86 59.72 94.02 41.71 91.09 39.46 18.32 44.32 45 E6a_E7a KnownJunction 0 14.52 112.61 17.36 25.57 53.14 85.12 82.85 31.38 53.73 54.18 29.64 21.31 27.43 32.73 9.52 22.47 61.43 108.52 30.59 90.89 41.51 24.25 56.94 46 ER7a ExonRegion 0 11.27 84.58 14.28 38.58 39.26 56.96 69.12 32.45 55.96 45.81 37.04 33.40 55.71 32.81 10.89 47.31 62.25 178.14 40.69 121.02 36.92 26.53 52.56 47 E7_Da KnownBoundary 0 26.60 70.97 23.59 56.34 41.00 54.29 40.19 39.68 71.50 52.57 26.16 67.22 55.35 34.38 8.90 55.46 69.57 237.57 43.48 136.46 33.24 22.17 47.89 48 ER7b ExonRegion 1 17.90 45.18 23.61 31.65 36.75 33.29 59.27 30.96 60.88 49.22 34.28 51.36 39.66 47.95 12.61 48.94 75.69 196.96 64.56 122.49 29.07 30.82 44.02 49 E7b_E8a KnownJunction 1 6.74 40.58 21.58 30.27 24.36 33.16 66.86 37.62 56.05 50.15 44.38 47.72 55.52 58.51 9.39 45.80 104.07 108.07 54.87 130.14 31.75 27.43 59.24 50 E7b_E8b KnownJunction 0 0.00 0.00 0.00 0.00 4.50 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E8_Ab NovelBoundary 0 0.00 13.68 8.90 26.57 18.00 19.48 22.88 22.34 23.23 48.38 2.00 17.26 25.97 14.42 10.14 10.51 27.02 32.21 20.14 68.77 5.31 14.57 28.60 52 ER8a ExonRegion 1 2.12 30.50 17.49 35.68 26.76 30.17 47.66 36.61 57.38 59.53 32.51 41.72 63.10 55.96 10.29 34.58 91.52 89.53 51.26 124.18 25.84 32.77 56.33 53 ER8b ExonRegion 1 7.06 70.28 18.80 41.39 43.51 51.63 57.96 36.48 69.15 62.80 51.21 46.81 49.04 44.82 10.40 43.95 87.30 160.99 46.95 117.11 19.82 24.73 54.70 54 E8_Da NovelBoundary 0 3.56 21.11 3.46 12.89 6.79 0.00 14.40 8.67 3.30 7.15 2.68 0.00 0.00 4.77 0.00 3.67 13.28 12.39 7.15 8.50 0.00 0.00 4.35 55 E8a_E9a KnownJunction 1 6.96 71.57 21.32 35.83 35.48 39.35 52.60 27.44 64.35 55.04 40.06 36.61 60.55 36.38 6.30 7.69 72.56 110.93 40.10 88.84 11.06 19.47 27.15 56 E8a_E9b KnownJunction 0 0.00 20.72 2.96 0.00 11.97 7.84 14.93 2.38 9.14 4.27 10.32 6.30 0.00 7.48 5.44 4.19 12.16 44.81 6.96 23.46 2.66 2.82 4.35 57 I8 Intron 0 3.32 17.82 4.30 4.51 11.20 3.60 12.47 6.74 6.02 4.25 2.02 10.76 18.65 5.63 1.76 4.67 2.59 3.25 3.32 10.57 0.86 1.09 1.15 58 I8_SR1 SilentIntronRegion 0 3.34 17.90 4.32 4.54 11.25 3.62 12.53 6.78 6.05 4.27 2.03 10.81 18.75 5.66 1.77 4.70 2.60 3.26 3.34 10.62 0.86 1.10 1.16 59 E9_Aa NovelBoundary 0 3.78 8.16 10.97 12.39 11.63 2.16 21.15 9.49 6.37 9.67 2.68 6.30 26.78 6.95 4.45 7.86 7.85 10.82 0.00 11.57 0.00 3.12 0.00 60 ER9a ExonRegion 1 17.28 66.38 20.47 31.44 35.82 43.29 67.39 30.09 66.87 58.36 49.82 53.07 56.39 42.13 7.32 29.15 80.87 93.81 39.98 114.59 22.83 26.70 33.14 61 E9_Ab KnownBoundary 0 14.15 61.17 23.68 38.69 38.62 39.24 58.03 33.56 71.79 55.63 54.80 26.41 53.73 52.62 13.97 36.14 48.71 99.36 29.93 110.58 46.21 16.35 44.13 62 ER9b ExonRegion 0 19.97 73.36 32.26 53.23 58.81 63.98 89.42 35.28 66.54 74.89 50.50 65.73 72.07 47.85 19.35 52.25 81.52 117.63 48.23 128.14 25.21 26.70 39.08 63 E9_Da KnownBoundary 0 3.56 15.92 3.02 13.05 12.39 0.00 10.69 6.61 2.72 1.02 4.90 0.00 6.82 0.00 0.00 8.37 8.70 4.39 0.00 14.06 0.00 2.88 0.00 64 E9a_E10a KnownJunction 0 10.37 84.26 12.33 44.42 65.20 46.73 105.50 34.34 58.88 32.85 37.27 12.60 28.24 59.27 14.83 45.71 58.16 75.82 64.75 104.25 13.16 14.14 16.90 65 ER9c ExonRegion 0 12.32 8.38 5.77 12.11 12.90 3.45 10.66 5.56 3.15 6.89 1.92 1.77 4.45 1.22 1.59 1.80 2.81 4.12 2.54 8.23 1.34 0.81 1.36 66 E9_Db NovelBoundary 0 60.97 0.00 18.72 8.29 4.33 0.00 11.75 3.94 6.51 13.75 0.00 0.00 0.00 0.00 4.70 0.00 3.55 6.63 13.84 6.39 3.15 0.00 0.00 67 ER10a ExonRegion 0 13.62 79.47 13.58 33.10 55.38 62.76 94.28 36.64 56.39 46.37 50.94 44.83 48.50 54.32 19.16 48.81 40.13 93.04 61.40 108.31 28.47 19.25 22.37 68 E10_Da NovelBoundary 0 0.00 6.71 6.65 18.68 0.00 0.00 19.52 11.46 9.26 4.78 2.63 0.00 6.33 0.00 4.45 0.00 7.76 3.48 11.20 12.59 0.00 0.00 0.00 69 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 E10a_E12a KnownJunction 0 13.63 134.38 9.11 33.03 33.02 40.72 76.93 27.44 51.45 48.51 34.01 54.17 68.34 27.90 10.63 33.15 39.64 85.56 32.38 89.93 23.54 8.02 35.60 71 ER11a ExonRegion 0 12.13 5.16 0.00 1.33 7.03 0.00 4.29 0.00 1.19 2.16 2.53 2.22 9.92 3.41 8.11 5.83 2.16 2.70 2.08 2.73 0.00 0.00 1.92 72 E11_Da NovelBoundary 0 10.30 8.62 6.06 1.70 0.00 0.00 11.66 2.09 4.48 2.61 0.00 18.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 73 E11a_E12a KnownJunction 0 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER12a ExonRegion 0 23.22 58.97 17.52 42.25 56.63 61.06 73.96 36.37 66.56 52.93 42.86 66.05 58.10 38.10 13.96 42.82 59.30 83.81 47.72 100.21 15.55 19.58 23.03 75 E12_Da KnownBoundary 0 31.78 89.72 13.25 52.57 140.07 60.19 101.09 27.56 64.00 46.39 43.96 71.27 85.22 38.08 22.99 23.50 52.08 84.32 31.25 85.14 9.33 20.33 31.58 76 ER12b ExonRegion 0 16.39 103.55 20.75 32.97 60.46 44.21 77.74 32.18 50.28 59.72 31.52 52.19 45.13 27.08 15.98 31.64 39.41 47.69 37.79 88.32 10.11 22.63 16.07 77 E12_Db KnownBoundary 1 28.97 418.81 18.63 21.11 127.42 52.64 55.07 34.83 23.35 44.99 0.00 64.07 56.17 9.89 4.45 11.88 9.07 4.10 8.00 24.29 0.00 6.06 0.00 78 ER12c ExonRegion 0 51.76 163.57 51.84 76.81 108.03 82.34 102.29 67.66 72.39 91.73 23.53 46.76 42.02 26.02 28.75 29.27 30.00 42.58 42.06 83.00 9.17 36.40 25.98 79 ER12d ExonRegion 0 4.23 4.07 1.23 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00