Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PARP15 Gene 0 215.75 10.12 1.27 14.14 87.64 11.09 28.31 25.05 22.40 2.83 326.84 145.74 573.81 411.35 263.32 294.37 151.41 1.91 5.63 6.83 1.12 3.18 4.35 2 383660 Transcript 1 3.53 0.00 0.00 0.00 0.00 0.68 0.29 0.00 0.41 0.00 23.05 0.00 2.43 48.78 16.76 23.23 18.34 0.00 0.00 0.00 0.00 0.00 0.00 3 483793 Transcript 0 117.24 11.68 1.11 7.96 43.93 5.38 16.17 13.05 9.90 1.87 116.51 56.55 208.87 156.92 123.14 124.61 56.09 2.23 6.57 7.98 1.05 2.68 4.19 4 464300 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 465304 Transcript 0 5.03 0.00 0.00 0.49 2.64 0.00 0.23 1.03 0.87 0.00 15.58 10.12 30.51 31.15 13.48 9.96 6.95 0.00 0.00 0.00 0.00 0.00 0.00 6 310366 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 493645 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 473627 Transcript 0 13.62 0.00 0.00 0.14 1.57 0.09 2.46 0.37 4.34 1.15 16.22 5.18 32.49 21.67 13.49 21.17 13.37 0.00 0.00 0.00 0.93 0.04 0.00 9 ER1a ExonRegion 0 3.53 0.00 0.00 0.00 0.00 0.68 0.29 0.00 0.41 0.00 23.05 0.00 2.43 48.78 16.76 23.23 18.34 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 1 39.94 0.00 0.00 0.00 11.77 10.14 9.32 0.69 4.67 0.00 161.66 0.87 8.19 243.03 127.71 174.27 112.71 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Ac KnownBoundary 1 142.47 0.00 0.00 0.00 40.49 20.39 25.70 2.14 9.61 0.00 211.11 0.00 6.82 352.05 200.38 250.70 124.92 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1c ExonRegion 1 14.88 0.00 0.02 0.00 4.22 2.11 4.63 2.05 5.26 0.00 129.33 11.72 39.04 186.18 89.96 108.33 91.47 0.00 0.00 0.00 0.00 0.00 0.40 13 E1a_E4a KnownJunction 1 3.78 0.00 0.00 0.00 0.00 0.00 2.21 6.61 8.07 0.00 169.57 0.00 109.41 492.26 131.41 243.27 96.77 0.00 0.00 0.00 0.00 0.00 4.35 14 E1a_E5a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 9.30 0.00 16.66 4.77 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER3a ExonRegion 0 15.65 0.00 0.00 0.00 1.45 0.00 1.63 2.12 0.00 0.00 4.49 5.87 30.79 4.61 13.27 8.53 4.07 0.00 0.00 0.00 0.00 0.00 0.00 18 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 3.99 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER4a ExonRegion 0 28.33 0.00 0.75 2.31 26.45 3.22 7.97 9.95 10.45 0.90 240.03 51.45 201.44 423.29 188.07 268.41 139.08 0.00 0.00 0.00 0.00 0.00 3.18 20 E4a_E5a KnownJunction 1 38.90 0.00 0.00 3.76 64.01 12.27 29.59 12.69 11.00 2.98 327.45 40.36 230.83 315.85 220.78 200.37 128.85 0.00 0.00 0.00 0.00 0.00 0.00 21 ER5a ExonRegion 0 45.52 0.00 0.00 3.30 29.51 7.61 10.11 10.75 19.48 1.02 340.05 116.24 354.86 496.54 217.51 293.45 174.54 0.00 0.00 0.00 0.00 0.45 0.63 22 E5_Da NovelBoundary 0 41.56 0.00 0.00 1.70 35.48 0.00 16.74 11.46 13.57 0.00 120.08 80.28 244.14 231.97 176.15 223.02 126.13 0.00 0.00 0.00 0.00 0.00 0.00 23 E5a_E6a KnownJunction 0 19.63 0.00 0.00 1.73 2.97 11.24 0.00 2.55 5.67 0.00 147.04 49.97 174.66 202.19 61.93 100.66 60.50 0.00 0.00 0.00 0.00 0.00 0.00 24 E5a_E7a NovelJunction 0 2.96 0.00 0.00 1.73 0.00 0.00 0.00 2.38 0.00 0.00 12.21 0.00 13.47 0.00 5.44 8.72 3.46 0.00 0.00 0.00 0.00 0.00 0.00 25 E5a_E8b NovelJunction 0 3.26 0.00 0.00 0.00 4.33 0.00 0.00 0.00 2.60 0.00 43.59 29.26 80.19 69.52 39.31 34.52 23.38 0.00 0.00 0.00 0.00 0.00 0.00 26 E5a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.47 12.45 6.49 14.77 0.00 8.46 4.77 0.00 0.00 0.00 0.00 0.00 0.00 27 I5 Intron 0 35.83 0.14 0.25 3.77 27.81 2.40 10.21 8.86 7.35 1.41 117.33 66.21 440.88 202.00 111.14 133.99 79.97 0.00 0.00 0.00 0.61 0.29 0.20 28 I5_AR1 ActiveIntronRegion 0 22.97 0.38 0.34 6.42 29.22 1.83 14.48 7.68 5.90 1.45 132.22 63.93 372.35 214.53 120.66 129.51 80.66 0.00 0.00 0.00 0.00 0.39 0.00 29 I5_SR1 SilentIntronRegion 0 51.21 0.00 0.26 2.35 31.79 2.39 7.86 10.08 9.07 1.73 120.43 76.42 570.49 236.54 126.67 167.50 88.47 0.00 0.00 0.00 1.28 0.30 0.43 30 E6_Aa NovelBoundary 1 67.20 0.00 0.00 3.80 78.01 7.84 36.08 13.10 11.08 3.81 201.31 105.63 940.52 320.21 108.41 210.63 131.84 0.00 0.00 0.00 0.00 0.00 0.00 31 ER6a ExonRegion 0 72.14 0.00 0.58 11.02 51.47 4.67 20.42 15.06 21.64 3.45 346.84 191.71 1075.48 461.96 191.34 288.43 213.49 0.00 0.00 0.00 0.00 0.47 0.00 32 E6_Da NovelBoundary 0 133.58 0.00 0.00 21.01 45.25 0.00 16.43 13.18 24.94 3.33 238.01 111.34 794.27 301.84 164.78 184.23 182.89 0.00 0.00 0.00 0.00 0.00 0.00 33 E6a_E7a KnownJunction 0 7.41 0.00 0.00 2.06 0.00 0.00 0.00 3.70 4.46 0.00 42.38 19.36 13.31 78.29 27.94 28.03 14.31 0.00 0.00 0.00 0.00 0.00 0.00 34 E6a_E8b KnownJunction 0 5.93 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.91 18.91 67.37 64.28 44.63 30.59 16.46 0.00 0.00 0.00 0.00 0.00 0.00 35 I6 Intron 0 73.36 0.38 0.17 5.56 60.40 7.10 18.94 11.80 10.00 1.86 191.59 122.35 649.59 278.42 138.72 159.86 118.32 0.00 0.00 0.00 0.00 0.98 0.42 36 I6_SR1 SilentIntronRegion 0 72.43 0.45 0.20 4.87 61.89 7.66 20.00 12.06 9.44 2.19 180.02 117.19 585.99 280.17 130.51 146.28 116.83 0.00 0.00 0.00 0.00 1.16 0.49 37 I6_AR2 ActiveIntronRegion 0 86.78 0.00 0.00 4.91 43.48 4.85 12.22 7.09 9.21 0.00 149.24 91.73 830.92 166.57 118.65 195.91 95.04 0.00 0.00 0.00 0.00 0.00 0.00 38 I6_SR2 SilentIntronRegion 0 76.42 0.00 0.00 11.46 56.61 3.67 13.69 11.89 14.92 0.00 304.52 178.15 1090.74 315.79 214.74 255.55 141.85 0.00 0.00 0.00 0.00 0.00 0.00 39 E7_Aa NovelBoundary 1 104.46 0.00 0.00 10.35 95.93 0.00 27.69 19.55 16.35 0.00 201.58 143.45 1151.22 287.01 186.29 189.95 173.07 0.00 0.00 0.00 0.00 0.00 0.00 40 ER7a ExonRegion 1 5.50 0.00 0.00 1.36 4.89 0.00 0.00 1.38 1.62 0.00 31.70 25.98 162.95 106.77 39.79 21.23 16.98 0.00 0.00 0.00 0.00 0.00 0.00 41 E7_Da NovelBoundary 1 334.50 0.00 0.00 11.49 340.24 27.48 95.79 11.58 25.90 3.33 300.02 256.43 1222.16 414.92 279.38 257.45 165.68 0.00 0.00 0.00 0.00 0.00 0.00 42 E7a_E8b KnownJunction 0 6.67 0.00 0.00 0.00 8.15 0.00 0.00 0.00 0.00 0.00 27.90 19.66 6.49 25.90 13.35 11.88 13.28 0.00 0.00 0.00 0.00 0.00 0.00 43 I7 Intron 0 250.03 0.35 0.00 6.34 53.84 4.77 18.60 15.19 17.88 0.59 219.27 147.86 703.70 392.95 186.19 205.69 100.78 0.00 0.00 0.00 0.00 1.08 0.00 44 I7_SR1 SilentIntronRegion 0 251.73 0.36 0.00 6.39 54.20 4.80 18.73 15.30 18.00 0.60 220.71 148.85 708.31 395.58 187.45 207.04 101.47 0.00 0.00 0.00 0.00 1.09 0.00 45 E8_Aa NovelBoundary 0 189.52 0.00 0.00 12.12 67.66 2.50 34.01 18.57 23.64 0.00 390.41 179.16 493.80 428.69 175.04 262.67 121.74 0.00 0.00 0.00 0.00 5.88 4.01 46 ER8a ExonRegion 0 189.47 0.00 0.01 13.81 71.82 9.80 30.16 24.83 20.27 1.03 264.82 180.60 744.12 453.72 205.62 233.75 115.15 0.00 0.00 0.00 0.00 1.41 0.00 47 E8_Ab KnownBoundary 0 305.76 0.00 0.00 25.87 61.63 17.32 34.27 32.00 25.23 1.13 249.75 221.92 843.78 482.61 216.33 255.57 127.16 0.00 0.00 0.00 0.00 5.88 0.00 48 ER8b ExonRegion 0 260.55 0.00 2.91 13.31 72.59 9.90 35.65 29.61 22.77 3.34 473.88 228.68 846.49 640.78 303.70 338.56 195.18 0.00 0.00 0.00 1.44 4.09 3.84 49 E8a_E9a KnownJunction 0 328.28 0.00 0.00 13.82 101.78 11.98 35.33 27.48 21.18 0.00 415.21 199.72 934.03 700.28 320.54 382.81 172.42 0.00 0.00 0.00 0.00 2.51 0.00 50 E8a_E9b NovelJunction 0 17.78 0.00 0.00 0.00 0.00 0.00 1.94 2.42 0.00 0.00 13.27 19.96 51.46 47.32 19.66 12.90 7.67 0.00 0.00 0.00 0.00 0.00 0.00 51 ER9a ExonRegion 0 259.16 0.00 1.74 20.92 102.42 14.24 21.22 21.87 19.93 2.52 461.80 282.44 1139.94 686.37 327.64 428.73 209.47 0.00 0.00 0.00 0.12 3.21 2.86 52 E9_Ab KnownBoundary 0 374.73 0.00 3.55 18.81 87.18 15.79 28.09 19.02 29.75 3.38 513.71 293.80 882.57 731.06 445.52 377.34 205.61 0.00 0.00 0.00 2.41 5.82 4.18 53 ER9b ExonRegion 0 304.26 0.00 2.98 14.82 85.69 19.96 44.64 21.58 35.14 4.31 648.74 239.73 875.89 718.82 335.13 420.82 263.52 0.00 0.00 0.00 2.77 2.22 3.12 54 E9a_E10a KnownJunction 0 346.51 0.00 1.57 16.91 149.66 19.53 62.62 22.10 27.89 1.18 601.36 190.56 911.79 717.00 319.92 412.71 237.96 0.00 0.00 0.00 0.00 0.00 0.00 55 ER10a ExonRegion 0 279.18 0.00 0.43 11.03 111.53 17.64 39.05 28.04 29.21 4.82 575.51 219.57 915.23 669.06 336.13 466.06 255.53 0.00 0.00 0.00 3.36 2.05 0.00 56 E10a_E11b KnownJunction 0 356.73 0.00 0.00 9.32 58.83 13.17 37.63 37.87 36.23 7.44 657.01 343.01 1224.27 615.34 375.18 480.90 333.24 0.00 0.00 0.00 2.78 2.69 0.00 57 ER11a ExonRegion 0 13.62 0.00 0.00 0.14 1.57 0.09 2.46 0.37 4.34 1.15 16.22 5.18 32.49 21.67 13.49 21.17 13.37 0.00 0.00 0.00 0.93 0.04 0.00 58 E11_Ab KnownBoundary 0 27.63 0.00 0.00 0.00 7.98 0.00 9.01 0.00 4.63 3.33 7.05 0.00 33.44 11.54 13.97 11.45 4.21 0.00 0.00 0.00 2.78 0.00 0.00 59 ER11b ExonRegion 0 319.91 0.00 1.47 16.95 105.19 20.40 28.54 37.22 37.77 2.80 723.69 286.96 1052.25 804.77 451.17 579.62 349.18 0.00 0.00 0.00 2.39 1.27 0.91 60 E11a_E12a KnownJunction 0 169.51 0.00 0.00 8.19 56.45 8.69 29.06 15.24 19.01 0.00 296.86 163.55 441.04 344.05 259.47 261.21 163.81 0.00 0.00 0.00 2.66 2.69 0.00 61 E11a_E13a KnownJunction 0 149.80 0.00 2.37 9.56 18.85 11.19 6.14 23.62 14.53 0.00 267.12 94.98 381.96 321.92 231.04 186.36 133.33 0.00 0.00 0.00 0.00 0.00 0.00 62 ER12a ExonRegion 0 241.16 0.00 0.00 9.51 85.20 13.90 24.57 26.24 19.91 0.51 421.69 169.37 758.81 444.80 282.63 364.75 205.20 0.00 0.00 0.00 0.42 1.21 0.71 63 E12a_E13a KnownJunction 0 254.56 0.00 0.00 3.76 57.98 4.32 16.52 15.24 10.10 2.10 329.29 123.34 569.77 294.66 251.19 247.63 126.41 0.00 0.00 0.00 0.00 3.12 0.00 64 ER13a ExonRegion 0 397.66 0.00 1.71 13.04 108.15 13.63 27.02 41.50 44.04 2.48 634.96 243.83 944.72 724.62 393.42 416.03 274.65 0.00 0.00 0.00 0.00 2.44 2.34 65 E13_Da KnownBoundary 0 540.54 0.00 3.49 19.91 128.35 19.02 40.94 41.90 40.91 2.77 789.83 250.13 954.97 859.15 504.36 502.35 249.46 0.00 0.00 0.00 0.00 2.88 4.27 66 ER13b ExonRegion 0 383.23 0.00 2.37 14.46 108.77 11.88 28.70 27.81 34.99 1.94 764.50 326.50 1022.53 805.67 510.49 425.01 308.92 0.00 0.00 0.00 0.00 4.71 5.11 67 E13b_E14a KnownJunction 0 395.48 0.00 1.83 11.52 119.02 13.80 39.17 23.91 35.47 1.37 696.97 348.56 1063.08 805.70 595.22 460.99 251.43 0.00 0.00 0.00 0.00 4.90 8.71 68 ER14a ExonRegion 0 271.05 0.01 1.25 23.96 139.93 24.00 38.51 40.19 40.08 1.64 686.43 259.82 853.16 711.69 518.53 565.06 271.18 0.00 0.00 0.00 0.00 4.12 3.96 69 E14a_E15a KnownJunction 0 298.28 0.00 1.42 40.05 152.29 13.34 21.20 41.40 42.53 0.00 789.57 238.58 954.16 814.12 514.37 432.62 347.92 0.00 0.00 0.00 0.00 5.57 4.35 70 ER15a ExonRegion 0 331.70 0.53 0.90 24.26 105.09 13.55 27.51 38.80 39.32 3.48 620.45 214.56 640.51 734.07 443.64 546.85 268.74 0.00 0.00 0.00 0.00 4.19 2.24 71 E15_Da KnownBoundary 0 403.11 2.70 0.00 18.71 146.35 0.00 32.33 36.47 23.41 6.07 466.59 185.91 692.32 615.58 365.29 554.13 235.53 0.00 0.00 0.00 0.00 8.70 0.00 72 ER15b ExonRegion 0 309.96 0.73 0.00 16.99 194.53 14.75 45.10 28.87 31.09 5.82 419.51 189.59 708.19 527.27 292.11 339.66 189.60 0.00 0.00 0.00 0.00 2.49 0.08 73 E15_Db KnownBoundary 0 303.76 0.00 0.00 29.60 236.76 16.75 66.07 33.48 29.54 3.09 383.47 270.99 1242.78 410.56 273.32 378.11 141.84 0.00 0.00 0.00 0.00 0.00 0.00 74 ER15c ExonRegion 1 280.35 0.00 0.00 27.88 160.39 12.84 40.85 48.59 29.18 4.46 359.74 255.69 1158.04 419.25 338.45 394.36 158.35 0.00 0.00 0.00 0.00 4.17 2.94 75 E15_Dc KnownBoundary 1 335.17 3.03 0.00 19.21 133.02 17.43 28.71 44.65 22.57 4.27 318.71 252.68 1165.02 501.62 413.75 402.12 166.71 0.00 0.00 0.00 0.00 5.27 3.76 76 ER15d ExonRegion 0 319.86 0.83 0.00 21.47 173.70 15.87 42.97 39.05 33.08 2.98 429.61 276.49 1077.56 531.64 332.51 379.76 175.41 0.00 0.00 0.00 0.20 1.21 1.57 77 E15_Dd KnownBoundary 0 709.38 0.00 0.00 24.91 223.68 41.68 90.58 46.09 28.85 6.77 396.89 141.05 761.80 666.67 473.45 609.41 191.12 0.00 0.00 0.00 0.00 2.69 0.00 78 ER15e ExonRegion 0 234.48 23.37 2.21 15.92 87.87 10.76 32.33 26.10 19.80 3.75 228.54 100.65 411.25 299.06 246.27 240.77 107.41 4.47 13.15 15.95 2.10 5.35 8.38