Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HSPBAP1 Gene 0 55.64 22.70 20.65 22.09 39.10 30.92 23.88 23.51 17.32 25.56 19.18 24.32 33.93 21.46 24.49 21.83 24.49 14.07 18.52 21.67 8.00 26.44 23.58 2 306103 Transcript 0 2.12 1.57 0.00 1.30 0.00 3.25 0.00 0.00 0.22 0.00 0.53 0.00 0.00 4.43 0.00 7.16 0.15 1.93 0.72 0.00 0.10 1.61 5.07 3 315996 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 383659 Transcript 0 17.46 2.54 1.23 3.41 4.01 1.83 2.32 0.00 0.00 0.57 0.00 2.16 0.00 0.81 0.00 0.74 3.30 0.00 0.00 2.13 0.00 3.13 0.00 5 467643 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 465044 Transcript 0 18.68 10.02 8.44 11.93 19.75 13.82 22.59 18.16 18.20 21.37 10.69 27.85 41.89 11.82 12.60 15.00 22.87 11.86 15.94 27.22 5.99 20.54 21.98 7 478601 Transcript 0 0.00 0.00 0.00 0.00 0.42 0.83 2.07 0.40 0.00 0.00 0.31 0.00 1.33 0.18 0.32 0.00 3.27 0.00 0.50 0.91 0.00 0.32 0.91 8 463266 Transcript 0 20.63 1.88 0.00 0.47 13.85 1.07 1.77 0.45 0.64 0.40 3.08 19.74 11.87 3.80 5.66 7.74 7.08 1.00 3.15 0.99 0.90 4.19 1.02 9 471534 Transcript 0 78.75 40.09 23.41 34.16 62.84 55.78 29.34 31.67 20.80 22.54 7.45 8.78 28.49 7.08 19.61 10.85 6.39 5.96 7.31 13.78 1.58 25.99 11.44 10 ER1a ExonRegion 0 2.12 1.57 0.00 1.30 0.00 3.25 0.00 0.00 0.22 0.00 0.53 0.00 0.00 4.43 0.00 7.16 0.15 1.93 0.72 0.00 0.10 1.61 5.07 11 ER1b ExonRegion 1 14.67 7.49 4.12 1.83 6.69 42.01 14.65 1.26 2.81 3.36 13.75 0.00 0.00 22.00 13.39 52.08 14.48 26.37 14.84 4.88 14.02 13.87 45.78 12 E1_Ac KnownBoundary 0 31.64 15.26 7.33 5.13 19.19 88.53 37.58 2.38 4.83 4.59 25.85 0.00 0.00 26.49 22.99 72.03 25.15 45.64 21.84 11.57 23.97 32.70 61.55 13 ER1c ExonRegion 1 22.81 14.64 8.33 1.70 11.42 52.98 26.51 5.19 4.36 6.40 11.08 0.00 3.86 21.94 13.41 51.32 15.40 32.32 14.02 16.78 13.42 16.07 49.21 14 E1_Ad KnownBoundary 0 0.00 2.50 9.08 1.60 3.90 12.04 7.38 6.45 1.65 7.15 2.32 0.00 0.00 4.41 4.70 19.48 0.00 11.36 0.00 0.00 0.00 2.33 7.68 15 ER1d ExonRegion 0 6.04 4.63 3.29 0.40 5.95 3.26 1.79 3.26 2.06 1.81 3.97 2.89 0.43 3.85 8.11 12.27 18.71 3.70 7.26 5.71 6.41 1.27 5.22 16 E1_Ae KnownBoundary 0 28.15 5.92 4.35 0.00 21.22 5.56 4.11 9.04 3.47 2.53 11.79 5.70 0.00 7.18 21.14 20.08 29.36 9.00 16.94 17.45 18.90 3.12 7.26 17 ER1e ExonRegion 0 9.06 1.75 1.62 1.08 13.13 9.34 3.48 2.13 4.39 3.87 21.85 1.11 0.87 19.07 10.73 11.27 36.31 9.15 14.00 11.23 29.57 5.28 12.02 18 E1_Da NovelBoundary 0 0.00 0.00 1.77 0.00 0.00 0.00 0.00 2.55 0.00 1.02 2.68 5.85 0.00 0.00 4.45 6.84 17.86 3.52 0.00 0.00 0.00 0.00 4.35 19 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 20 E1a_E3a KnownJunction 0 3.78 0.00 4.17 1.86 8.66 7.15 1.90 4.35 7.52 8.11 27.38 0.00 0.00 35.14 9.27 14.70 36.84 26.24 22.97 17.58 34.16 7.84 32.18 21 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 1.70 3.31 3.33 1.60 0.00 0.00 1.23 0.00 5.32 0.71 1.27 0.00 6.60 0.00 1.98 2.59 0.00 1.30 3.65 22 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3a ExonRegion 0 17.68 15.62 17.44 12.78 27.48 32.82 14.70 15.52 8.06 21.42 40.94 30.96 30.54 36.94 26.72 52.20 46.64 25.40 29.66 20.42 20.33 33.43 49.37 24 E3a_E4a KnownJunction 0 24.37 38.09 19.60 18.51 16.89 30.15 33.12 10.84 9.35 25.28 59.12 24.16 42.04 36.49 49.45 29.91 71.53 14.14 20.71 22.95 5.68 39.68 19.63 25 E3a_E6a NovelJunction 0 0.00 0.00 1.83 0.00 0.00 2.90 2.21 0.00 0.00 0.00 8.05 0.00 0.00 0.00 0.00 4.36 0.00 5.14 4.61 0.00 3.15 0.00 0.00 26 ER4a ExonRegion 0 26.46 27.24 28.01 19.80 34.39 24.41 21.09 18.69 13.21 36.51 48.56 55.88 46.53 41.78 31.42 48.63 57.89 18.28 26.59 21.85 18.05 49.04 42.55 27 E4_Ab KnownBoundary 0 46.60 43.22 39.86 24.14 74.70 34.41 26.19 9.16 9.17 34.28 56.38 43.96 35.71 50.27 33.87 43.15 76.02 14.96 47.06 31.64 24.40 47.27 44.56 28 ER4b ExonRegion 0 50.23 31.00 29.26 26.49 51.10 31.17 18.28 8.09 8.80 33.71 53.37 48.57 48.27 58.11 37.15 38.78 61.27 22.71 30.77 32.38 20.42 45.23 46.48 29 E4a_E5a KnownJunction 0 26.60 0.00 0.00 0.00 17.66 0.00 0.00 0.00 0.00 0.00 2.68 23.71 6.17 0.00 0.00 3.85 8.70 0.00 0.00 0.00 0.00 5.63 0.00 30 E4a_E6a KnownJunction 0 53.49 42.43 18.15 32.30 35.82 55.65 26.54 8.83 8.25 32.56 57.96 18.76 78.57 77.52 35.97 46.57 61.80 28.77 36.71 47.87 22.12 43.66 47.46 31 E5_Aa NovelBoundary 0 18.30 18.81 3.67 1.56 13.33 0.00 4.50 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 3.33 4.77 2.20 0.00 0.00 3.09 2.39 0.00 32 ER5a ExonRegion 0 14.67 3.75 0.00 0.94 10.05 2.13 3.53 0.90 1.28 0.79 3.47 15.78 17.57 7.60 11.32 11.64 5.47 2.00 6.29 1.98 1.79 2.75 2.05 33 E5_Da NovelBoundary 0 349.84 306.59 359.60 330.86 219.19 178.14 278.76 351.92 284.43 311.33 56.44 122.59 157.13 108.66 181.72 246.00 164.19 435.84 183.82 343.68 135.42 118.79 220.66 34 I5 Intron 0 12.05 1.98 1.72 1.78 10.10 0.42 3.36 2.18 2.39 1.72 1.76 4.92 6.98 0.45 0.74 2.80 5.58 2.01 2.49 2.42 0.36 3.05 1.05 35 I5_SR1 SilentIntronRegion 0 12.05 1.99 1.72 1.78 10.10 0.42 3.36 2.18 2.40 1.73 1.76 4.92 6.99 0.45 0.74 2.81 5.59 2.01 2.49 2.42 0.36 3.05 1.05 36 E6_Aa NovelBoundary 0 42.38 0.00 0.00 0.00 31.24 0.00 4.15 0.00 8.28 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 2.28 3.76 0.00 0.00 7.53 4.18 37 ER6a ExonRegion 0 63.76 30.59 25.44 27.11 25.06 31.96 24.08 12.83 14.37 32.00 38.42 42.03 28.35 51.30 30.47 42.91 57.61 24.94 33.53 33.23 13.03 35.98 44.84 38 E6_Da NovelBoundary 0 0.00 0.00 3.25 1.93 0.00 0.00 3.71 0.00 2.69 1.58 2.42 0.00 0.00 0.00 0.00 7.78 4.68 0.00 17.22 3.20 5.50 0.00 0.00 39 E6a_E7a KnownJunction 0 16.52 12.56 3.67 3.40 16.64 8.63 4.33 4.35 1.71 3.33 0.00 0.00 6.66 7.18 4.45 0.00 0.00 2.16 0.00 6.20 0.00 0.00 0.00 40 E6a_E8a KnownJunction 0 60.75 40.78 17.39 26.44 11.88 31.91 16.21 7.52 9.87 25.06 27.74 13.95 18.83 67.93 18.54 47.94 34.03 4.31 22.87 34.20 6.30 27.62 34.74 41 ER6b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 4.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 1.06 0.00 0.00 0.00 42 E7_Aa NovelBoundary 0 1135.24 982.85 469.38 653.00 960.61 637.64 1250.42 586.17 496.29 533.53 372.57 500.71 630.80 463.07 694.48 1051.18 836.84 748.11 864.78 1020.50 600.66 460.35 1053.21 43 ER7a ExonRegion 0 16.47 3.84 3.41 1.55 15.34 5.37 6.64 2.28 3.84 2.99 2.43 0.05 6.69 4.81 1.13 13.08 4.71 2.95 7.11 6.54 5.48 1.45 9.35 44 E7_Da NovelBoundary 1 6.82 0.00 11.29 4.33 0.00 9.43 18.72 6.94 1.71 7.23 0.00 18.61 6.66 2.47 0.00 0.00 21.41 1.99 13.65 11.06 8.71 5.88 8.45 45 E7a_E8a KnownJunction 0 40.45 2.63 0.00 0.00 8.15 2.61 0.00 0.00 1.53 0.00 0.00 0.00 0.00 2.47 0.00 3.25 4.02 0.00 4.80 3.07 0.00 0.00 3.33 46 E8_Aa NovelBoundary 0 3.70 0.00 1.36 3.16 10.27 4.71 5.39 2.01 3.04 4.19 2.00 12.75 12.66 0.00 0.00 12.56 3.93 1.99 18.07 2.81 0.00 0.00 0.00 47 ER8a ExonRegion 1 101.48 43.85 25.01 34.36 49.63 40.65 40.58 22.04 21.90 43.41 44.15 41.77 40.13 69.61 26.78 43.87 33.53 24.86 48.67 29.22 6.69 45.18 47.45 48 E8_Da KnownBoundary 0 129.50 56.24 46.51 38.59 82.51 53.49 56.88 27.23 27.69 48.14 56.80 31.06 60.22 39.85 56.86 59.47 38.80 31.55 67.67 32.92 17.42 46.78 31.41 49 ER8b ExonRegion 0 86.31 41.12 26.86 27.02 33.91 40.57 32.37 17.58 18.28 34.37 45.39 30.10 26.38 55.47 34.18 49.55 51.78 29.56 36.88 30.72 14.26 23.18 35.38 50 E8_Db NovelBoundary 0 3.41 8.75 2.84 11.95 18.00 7.33 12.23 25.34 14.09 25.49 2.68 20.41 12.82 11.65 0.00 27.34 16.74 10.36 4.14 18.54 2.66 8.27 34.32 51 E8b_E9a KnownJunction 0 3.48 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 0.00 4.45 0.00 0.00 1.74 4.80 0.00 2.90 0.00 0.00 52 E8b_E10a KnownJunction 0 90.02 42.56 15.37 11.79 7.13 21.58 21.20 7.76 7.47 26.67 49.59 23.86 25.81 60.69 28.31 31.19 36.84 17.29 17.79 11.95 8.15 36.62 24.24 53 I8 Intron 0 8.04 7.72 2.97 4.96 7.98 6.47 6.46 7.69 7.99 8.35 7.87 6.77 13.25 8.19 5.88 11.29 12.54 12.96 8.64 19.62 5.98 8.48 11.95 54 I8_AR1 ActiveIntronRegion 0 8.12 7.81 2.99 5.01 8.07 6.54 6.53 7.77 8.07 8.44 7.94 6.84 13.39 8.27 5.94 11.41 12.67 13.10 8.73 19.84 6.04 8.57 12.06 55 E9_Aa NovelBoundary 0 3.11 17.83 1.63 4.96 4.33 5.11 23.19 18.15 9.29 14.77 8.05 11.85 6.82 12.01 10.75 20.93 30.01 14.22 0.00 34.32 11.74 5.51 18.69 56 ER9a ExonRegion 0 7.99 8.45 1.06 3.77 14.19 15.08 8.22 9.95 6.58 7.17 9.72 14.01 17.47 8.33 9.24 12.09 17.31 17.73 8.81 22.30 4.49 7.70 12.52 57 E9_Da KnownBoundary 1 14.08 16.12 6.09 3.46 15.79 21.58 11.57 14.70 7.61 7.49 9.27 42.91 0.00 19.31 15.45 11.96 16.08 19.36 8.00 24.29 5.50 11.21 12.46 58 ER9b ExonRegion 0 18.68 10.02 8.44 11.93 19.75 13.82 22.59 18.16 18.20 21.37 10.69 27.85 41.89 11.82 12.60 15.00 22.87 11.86 15.94 27.22 5.99 20.54 21.98 59 E9_Db NovelBoundary 0 19.48 19.34 8.16 3.06 11.46 8.06 25.79 13.23 10.68 12.22 7.37 18.16 13.64 7.42 8.90 24.10 16.27 4.85 3.48 14.83 2.59 13.23 11.35 60 I9 Intron 0 18.34 2.70 3.04 4.74 9.79 4.28 8.39 5.15 0.61 7.40 5.15 16.81 10.58 6.05 3.70 1.98 5.48 0.62 1.06 10.64 0.73 5.56 3.92 61 I9_SR1 SilentIntronRegion 0 18.59 2.73 3.08 4.80 9.92 4.34 8.48 5.22 0.62 7.50 5.22 17.03 10.72 6.13 3.75 2.01 5.55 0.62 1.08 10.78 0.74 5.62 3.97 62 E10_Aa NovelBoundary 0 25.49 0.00 3.40 7.36 7.81 21.58 12.14 12.77 8.19 8.65 5.37 12.30 13.64 7.42 4.45 16.92 14.31 3.77 12.71 17.71 0.00 25.41 3.93 63 ER10a ExonRegion 0 112.81 33.43 19.36 23.77 20.55 33.20 16.41 10.06 9.91 27.40 38.22 33.66 30.82 50.41 34.19 33.12 38.43 12.49 23.17 21.00 11.04 31.00 21.08 64 E10_Da NovelBoundary 1 10.22 12.50 1.12 6.53 15.70 4.43 10.11 2.30 1.77 5.67 2.11 29.71 12.66 0.00 4.45 0.00 4.58 0.00 0.00 6.26 0.00 5.27 4.18 65 E10a_E11b KnownJunction 0 128.84 60.58 12.95 19.44 47.96 47.13 27.12 9.98 11.63 28.50 29.22 18.76 21.91 31.14 31.03 15.04 34.22 6.84 20.71 14.57 11.37 30.43 20.40 66 I10 Intron 0 6.41 9.02 2.96 4.17 7.24 6.94 9.38 6.55 6.57 9.06 3.87 7.24 9.10 5.99 5.25 11.09 9.82 8.35 10.16 13.81 5.96 7.43 16.20 67 I10_AR1 ActiveIntronRegion 0 7.06 8.97 2.75 4.59 8.35 8.88 11.83 9.70 6.14 9.38 5.20 7.70 7.10 7.67 6.43 12.79 12.08 9.59 7.54 16.25 5.93 9.18 13.90 68 I10_SR2 SilentIntronRegion 0 6.88 9.79 3.80 4.49 5.57 5.01 7.58 4.02 8.38 10.46 3.02 7.19 12.31 4.62 4.60 10.44 8.59 8.24 14.50 12.73 6.88 6.51 21.78 69 I10 Intron 0 8.53 8.64 3.78 6.79 15.65 11.19 11.11 7.95 7.89 7.70 3.51 8.58 18.19 5.50 4.59 6.37 5.16 3.91 4.05 10.51 1.60 13.17 7.47 70 I10_SR1 SilentIntronRegion 0 8.54 8.65 3.78 6.79 15.66 11.20 11.12 7.96 7.89 7.70 3.51 8.59 18.20 5.50 4.60 6.38 5.16 3.91 4.05 10.52 1.60 13.18 7.47 71 E11_Aa NovelBoundary 0 16.30 11.71 23.51 29.07 43.12 26.18 30.56 10.68 20.95 17.81 7.53 6.30 26.78 15.01 4.45 7.78 8.51 6.55 4.80 22.24 0.00 22.35 3.76 72 ER11a ExonRegion 0 78.75 40.09 23.41 34.16 62.84 55.78 29.34 31.67 20.80 22.54 7.45 8.78 28.49 7.08 19.61 10.85 6.39 5.96 7.31 13.78 1.58 25.99 11.44 73 E11_Ab KnownBoundary 0 142.17 87.75 42.10 61.06 69.02 73.31 39.97 29.24 20.34 21.41 11.58 17.26 25.97 12.01 22.99 28.80 0.00 17.45 4.71 18.15 15.14 19.41 15.19 74 ER11b ExonRegion 0 225.95 92.71 75.08 76.46 143.15 108.86 56.21 53.88 32.15 50.51 50.91 36.52 55.98 54.79 72.27 55.74 35.17 33.13 36.63 37.81 25.20 56.48 55.50 75 E11a_E12a KnownJunction 1 283.31 90.25 109.31 109.94 150.68 82.11 77.99 72.08 47.25 53.05 54.12 55.52 114.28 39.44 101.12 55.88 25.90 56.96 42.92 49.41 23.41 53.89 58.22 76 E12_Aa NovelBoundary 0 29.49 0.00 4.67 5.76 15.70 13.46 3.93 14.42 0.00 2.95 2.16 0.00 6.17 0.00 0.00 0.00 3.46 2.16 0.00 2.68 0.00 0.00 0.00 77 ER12a ExonRegion 0 150.22 44.56 59.09 51.86 91.39 65.22 38.52 55.39 30.00 54.16 38.16 28.01 38.58 41.02 62.30 29.39 34.81 23.41 30.75 25.00 12.56 50.64 31.36 78 ER12b ExonRegion 0 17.46 2.54 1.23 3.41 4.01 1.83 2.32 0.00 0.00 0.57 0.00 2.16 0.00 0.81 0.00 0.74 3.30 0.00 0.00 2.13 0.00 3.13 0.00