Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC58 Gene 0 37.28 60.94 58.35 53.64 78.00 44.56 50.78 28.22 12.96 32.20 103.78 72.91 71.75 102.04 99.33 88.46 95.35 28.97 83.82 44.75 25.03 37.25 39.71 2 498466 Transcript 1 8.30 39.25 11.35 29.36 23.20 8.01 12.31 19.78 9.02 11.28 22.89 56.12 58.91 19.10 5.67 10.77 7.31 4.02 8.17 28.25 2.87 21.64 10.88 3 497726 Transcript 0 3.78 3.35 3.40 8.76 4.33 8.69 4.50 0.00 0.00 4.59 10.63 0.00 0.00 0.00 0.00 4.36 9.54 0.00 0.00 3.26 2.97 3.00 3.93 4 291458 Transcript 0 0.00 2.71 0.14 1.51 2.08 2.85 0.00 0.00 0.00 0.00 2.36 8.66 7.30 6.32 9.03 2.31 0.00 0.00 3.19 0.00 0.00 1.62 0.00 5 479899 Transcript 0 15.68 39.39 10.63 9.20 58.84 30.93 27.04 0.03 0.62 6.51 10.24 0.00 9.01 16.89 22.78 21.23 15.07 12.29 69.20 11.09 4.80 1.00 13.82 6 479414 Transcript 0 0.03 0.00 6.16 0.02 6.27 4.43 0.03 0.11 0.00 0.06 0.07 0.11 0.00 0.73 6.30 0.00 3.33 0.00 3.57 0.00 0.00 0.00 0.00 7 466854 Transcript 0 2.52 14.94 10.79 10.23 11.09 4.30 4.42 4.33 3.57 2.61 10.43 9.35 17.13 12.63 8.98 5.46 9.58 8.74 7.71 14.32 5.52 3.38 6.16 8 460810 Transcript 1 16.01 24.28 13.76 33.76 45.22 35.84 17.80 10.35 7.64 9.35 22.39 13.69 20.80 32.91 12.89 25.79 21.21 17.10 22.33 16.55 9.13 18.35 6.76 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 1 118.41 130.00 58.86 59.45 232.54 134.59 153.30 40.21 13.94 43.34 154.49 9.48 63.54 247.23 300.58 233.73 173.45 32.60 305.49 79.61 32.64 49.81 140.85 11 E1_Da NovelBoundary 0 34.38 48.41 8.84 11.15 76.57 57.13 77.42 0.00 1.68 6.02 23.06 0.00 0.00 48.80 66.26 45.80 31.04 23.21 59.86 26.78 6.30 3.12 45.33 12 E1a_E2a NovelJunction 0 3.78 3.16 3.34 0.00 21.14 2.90 13.51 2.55 0.00 3.12 7.84 0.00 0.00 17.78 0.00 21.28 14.31 4.31 13.18 6.33 3.15 0.00 4.10 13 E1a_E3a KnownJunction 1 379.62 390.65 163.36 151.30 745.08 388.13 432.97 125.56 45.49 95.55 449.06 31.81 124.67 525.46 556.40 624.79 484.34 76.19 850.57 192.14 96.37 132.02 363.13 14 E1a_E7a KnownJunction 0 3.78 3.35 3.40 8.76 4.33 8.69 4.50 0.00 0.00 4.59 10.63 0.00 0.00 0.00 0.00 4.36 9.54 0.00 0.00 3.26 2.97 3.00 3.93 15 E1b_E3a KnownJunction 0 12.15 40.06 13.01 8.59 53.06 21.81 10.02 0.00 0.00 6.66 4.95 0.00 18.02 4.47 15.20 10.68 8.04 11.36 69.55 6.14 3.15 0.00 6.40 16 ER1c ExonRegion 0 19.21 38.72 8.25 9.80 64.63 40.06 44.05 0.07 1.24 6.35 15.54 0.00 0.00 29.30 30.35 31.78 22.09 13.22 68.85 16.04 6.44 2.00 21.23 17 ER2a ExonRegion 0 0.05 0.00 4.99 0.03 5.42 0.00 0.07 0.22 0.00 0.11 0.14 0.22 0.00 1.46 3.70 0.00 1.90 0.00 3.19 0.00 0.00 0.00 0.00 18 E2a_E3a KnownJunction 0 0.00 0.00 7.33 0.00 7.13 8.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.90 0.00 4.77 0.00 3.95 0.00 0.00 0.00 0.00 19 ER3a ExonRegion 1 55.60 86.04 110.41 92.90 167.45 92.81 119.32 61.99 25.40 72.92 315.97 90.64 139.92 139.17 132.17 120.49 282.28 53.45 169.91 93.01 79.82 29.52 69.22 20 E3a_E4a KnownJunction 1 18.37 22.96 240.29 178.20 62.90 22.09 31.05 134.89 64.21 127.08 612.05 208.57 210.05 237.80 260.96 169.02 532.21 157.19 102.87 168.61 108.60 30.49 54.38 21 ER4a ExonRegion 0 21.71 61.01 196.12 134.17 288.53 178.18 163.66 83.67 36.21 96.93 375.35 212.17 167.05 469.69 522.64 504.03 354.86 101.20 423.05 138.59 76.46 139.28 218.33 22 E4_Da KnownBoundary 0 6.45 41.18 11.15 25.20 48.81 33.45 49.02 16.51 8.56 15.07 21.69 37.81 20.45 7.30 8.90 0.00 8.42 8.00 4.14 30.23 6.30 19.66 4.35 23 E4a_E7a KnownJunction 0 6.37 53.15 146.86 65.29 332.09 275.07 300.97 14.75 8.22 81.34 182.15 130.39 134.24 135.97 149.70 110.06 201.22 16.66 19.48 32.21 35.40 44.21 20.06 24 E4a_E8a NovelJunction 0 0.00 2.89 1.12 4.13 14.94 21.41 29.85 0.00 1.71 1.67 4.58 0.00 0.00 4.83 8.90 3.76 4.39 2.57 3.86 2.56 0.00 0.00 0.00 25 ER4b ExonRegion 1 8.30 39.25 11.35 29.36 23.20 8.01 12.31 19.78 9.02 11.28 22.89 56.12 58.91 19.10 5.67 10.77 7.31 4.02 8.17 28.25 2.87 21.64 10.88 26 E4_Db NovelBoundary 1 20.89 59.79 13.54 37.99 23.09 13.51 29.72 24.56 10.91 8.17 25.74 79.38 110.22 26.61 13.97 7.78 12.62 12.81 12.89 33.24 0.00 28.53 11.10 27 I4 Intron 0 10.41 25.49 17.95 33.29 26.05 10.96 18.00 25.83 13.66 16.15 28.88 60.53 87.17 24.91 11.37 14.61 15.28 11.81 11.67 39.59 4.46 24.10 9.63 28 I4_SR1 SilentIntronRegion 0 10.43 25.54 17.99 33.35 26.10 10.98 18.03 25.87 13.69 16.18 28.93 60.64 87.33 24.95 11.39 14.64 15.30 11.84 11.69 39.66 4.47 24.15 9.64 29 E5_Aa NovelBoundary 0 39.71 156.68 34.12 49.31 30.22 5.68 11.44 21.48 19.21 8.09 46.54 25.81 19.97 17.25 34.98 44.77 33.85 30.47 28.80 33.24 33.48 7.90 11.27 30 ER5a ExonRegion 0 12.51 38.83 32.14 41.51 32.55 18.42 16.56 21.60 9.11 11.53 34.65 27.42 48.02 33.38 31.26 24.89 29.38 35.81 19.91 33.25 15.58 9.94 21.26 31 E5_Da NovelBoundary 0 42.97 67.09 50.89 116.40 43.97 31.40 30.34 64.61 16.29 34.68 40.01 54.17 35.06 54.68 63.04 66.65 50.49 100.28 139.39 70.69 28.05 30.43 57.79 32 E5a_E6a KnownJunction 0 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 I5 Intron 0 28.87 39.27 22.23 34.31 26.67 11.35 14.03 20.00 10.82 10.22 28.40 25.71 34.19 36.85 18.95 24.64 27.02 26.23 29.08 24.56 20.81 13.56 15.72 34 I5_SR1 SilentIntronRegion 0 28.99 39.40 22.32 34.46 26.77 11.40 14.08 20.08 10.86 10.26 28.51 25.82 34.33 37.00 19.03 24.74 27.13 26.33 29.19 24.66 20.89 13.61 15.78 35 E6_Aa NovelBoundary 0 30.15 67.42 28.21 58.50 62.65 40.37 21.33 30.48 15.36 13.67 32.17 58.97 55.19 40.79 22.13 24.10 32.54 33.70 49.13 25.82 26.69 16.23 8.02 36 ER6a ExonRegion 1 0.11 30.23 9.78 7.02 22.92 3.09 5.56 0.06 5.23 0.00 12.63 13.78 30.80 20.11 7.59 2.43 13.75 6.22 14.97 22.84 12.01 4.44 5.19 37 E6_Ab NovelBoundary 1 11.11 33.09 15.32 19.38 11.80 2.90 23.80 7.48 9.43 2.87 13.06 39.46 40.58 7.18 16.19 7.69 4.77 22.63 8.28 22.95 15.07 8.63 4.27 38 E6_Da NovelBoundary 0 9.48 32.17 27.44 31.13 53.48 15.62 8.74 6.65 1.79 9.35 11.37 0.00 6.33 12.36 0.00 16.41 4.58 17.62 4.52 8.88 9.45 7.59 4.35 39 E6a_E6c KnownJunction 0 0.00 5.66 5.09 1.37 0.00 0.00 0.00 0.00 3.53 0.00 4.90 5.55 6.82 9.65 0.00 0.00 0.00 1.66 3.67 15.53 0.00 2.51 4.35 40 ER6b ExonRegion 1 5.17 23.05 15.79 10.75 22.00 21.39 6.62 0.96 6.86 3.70 16.11 4.33 28.14 15.34 7.41 9.25 1.10 10.06 9.56 19.86 4.65 12.96 9.14 41 ER6c ExonRegion 0 16.01 24.28 13.76 33.76 45.22 35.84 17.80 10.35 7.64 9.35 22.39 13.69 20.80 32.91 12.89 25.79 21.21 17.10 22.33 16.55 9.13 18.35 6.76 42 E6_Ac KnownBoundary 1 21.26 47.36 21.17 68.19 62.56 26.86 22.17 13.06 14.09 9.03 14.32 25.21 42.04 50.97 15.45 32.13 16.74 27.77 22.97 27.10 11.86 24.13 12.04 43 ER6d ExonRegion 0 36.96 48.01 39.84 59.01 37.71 11.84 15.69 21.05 12.59 11.50 48.11 31.84 20.53 41.09 34.19 24.37 34.28 18.79 46.70 42.03 17.17 19.92 12.00 44 E6b_E7a KnownJunction 0 26.23 30.26 34.00 34.16 16.55 5.00 14.09 19.30 7.61 7.17 12.85 12.60 20.45 4.77 15.58 12.13 12.81 7.92 16.47 15.28 8.65 0.00 4.35 45 I6 Intron 0 6.07 19.17 4.65 13.61 10.45 3.48 8.64 4.98 2.04 3.92 10.46 11.42 10.36 10.54 6.34 8.42 7.33 7.18 4.68 10.45 1.97 4.78 4.42 46 I6_SR1 SilentIntronRegion 0 6.08 19.20 4.65 13.63 10.47 3.49 8.65 4.99 2.05 3.93 10.47 11.44 10.37 10.56 6.35 8.43 7.35 7.19 4.69 10.46 1.98 4.79 4.43 47 ER7a ExonRegion 0 132.85 208.48 200.67 141.29 174.28 157.16 203.34 60.70 30.40 94.62 223.73 186.09 103.02 181.17 130.94 147.76 241.57 71.97 115.04 53.94 46.35 69.45 27.21 48 E7a_E8a KnownJunction 0 485.05 583.84 227.64 198.34 228.95 217.89 219.58 82.39 41.38 99.52 401.05 215.92 170.77 364.06 349.59 256.86 361.66 109.69 332.43 94.34 87.85 128.35 53.10 49 E7a_E8b KnownJunction 0 0.00 0.00 6.95 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 50 E8_Aa NovelBoundary 0 42.23 49.66 16.38 46.85 40.41 18.63 14.00 13.68 6.57 7.17 9.84 0.00 0.00 9.18 0.00 3.93 8.60 4.39 8.85 26.01 0.00 0.00 3.67 51 ER8a ExonRegion 1 327.22 347.36 125.30 91.27 159.02 108.98 151.46 37.58 18.95 68.46 257.84 243.27 85.55 426.81 363.56 139.79 271.13 49.67 185.85 68.86 69.45 115.17 27.19 52 E8_Da KnownBoundary 1 101.50 97.48 64.31 18.15 44.65 11.24 36.61 6.00 9.14 36.77 77.28 60.47 5.68 83.70 138.95 30.33 88.92 5.60 20.52 10.67 13.47 45.31 12.12 53 ER8b ExonRegion 1 26.79 34.98 20.94 12.85 17.66 4.77 14.11 6.67 1.69 18.81 36.61 47.87 7.10 31.14 37.96 20.72 33.86 4.65 8.74 7.78 6.61 24.11 5.03 54 E8_Ab KnownBoundary 1 14.30 21.90 41.13 3.43 18.68 2.84 9.85 6.28 1.59 32.15 27.27 67.82 13.64 16.66 4.45 34.86 40.58 2.11 0.00 22.18 2.35 37.60 11.69 55 ER8c ExonRegion 0 28.87 39.00 85.21 50.43 36.84 4.61 16.53 20.17 4.47 51.76 117.26 151.53 89.11 91.33 100.73 113.47 132.21 9.38 41.16 31.59 30.51 55.08 25.30 56 E8_Db KnownBoundary 0 66.60 53.48 145.71 96.49 67.49 5.45 22.21 31.18 6.94 72.80 149.62 164.75 84.57 112.25 155.02 177.39 155.21 12.93 75.30 46.28 34.53 70.91 36.19 57 ER8d ExonRegion 1 40.12 42.95 76.70 52.59 49.77 9.72 30.85 19.31 9.79 55.92 104.42 107.72 140.80 65.63 63.97 84.48 93.52 14.00 45.22 25.20 17.88 58.95 19.48 58 E8_Dc KnownBoundary 0 15.41 12.76 17.44 13.92 4.33 0.00 1.81 5.30 4.80 8.33 6.05 12.15 12.99 5.24 23.24 7.86 0.00 2.57 0.00 3.20 0.00 19.90 7.43 59 E8_Dd KnownBoundary 1 13.56 27.17 15.79 12.85 38.96 13.12 5.61 9.69 1.22 5.29 25.59 49.67 84.73 24.60 23.36 43.49 0.00 4.31 17.32 5.56 2.84 14.51 15.54 60 ER8e ExonRegion 1 6.97 19.26 4.97 11.78 11.96 5.29 3.58 0.00 0.87 2.90 10.92 30.82 58.49 18.25 35.33 11.19 0.00 1.85 5.81 5.38 0.13 14.46 10.19 61 ER8f ExonRegion 1 1.68 11.50 1.23 7.28 7.57 5.50 2.47 0.00 0.00 0.28 5.67 28.07 46.74 23.75 41.12 5.94 0.00 1.21 6.37 3.08 0.00 6.54 5.27 62 ER8g ExonRegion 0 0.00 2.71 0.14 1.51 2.08 2.85 0.00 0.00 0.00 0.00 2.36 8.66 7.30 6.32 9.03 2.31 0.00 0.00 3.19 0.00 0.00 1.62 0.00