Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GTF2E1 Gene 0 35.84 36.77 27.30 25.63 62.76 29.75 35.84 46.19 27.27 43.66 60.32 57.83 58.79 74.76 63.40 58.92 57.20 39.71 26.18 43.25 15.37 21.76 23.24 2 484715 Transcript 0 0.38 0.36 0.30 0.08 0.00 1.03 0.97 0.78 0.00 1.21 0.00 0.68 0.48 0.00 0.66 2.82 0.14 0.77 0.00 0.14 0.00 0.04 0.54 3 469772 Transcript 0 0.00 0.00 0.00 0.00 4.33 5.56 0.00 2.09 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 5.94 2.78 0.00 7.51 4 283875 Transcript 0 32.55 47.67 22.78 21.55 81.61 43.87 60.18 47.29 24.65 48.53 76.12 68.36 66.12 120.12 82.82 94.62 75.91 50.75 34.02 60.97 21.43 33.76 24.31 5 492959 Transcript 0 0.00 2.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 3.07 0.00 0.00 0.00 6 497393 Transcript 0 1.06 0.22 0.98 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.62 3.63 0.00 0.03 2.59 0.00 0.06 0.00 0.00 0.00 0.00 0.93 4.82 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 3.09 2.22 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 1.76 0.41 0.00 0.00 0.00 0.00 0.11 0.00 8 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 3.90 8.35 2.12 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 8.98 0.00 0.00 0.00 0.00 2.88 0.00 10 E1_Ad KnownBoundary 0 23.41 15.39 1.42 1.53 31.07 23.91 26.06 1.97 0.00 16.31 41.85 0.00 12.66 50.86 33.50 63.66 35.62 50.70 0.00 35.92 8.90 11.14 15.62 11 ER1b ExonRegion 0 0.00 0.00 0.00 0.11 1.56 9.78 3.20 0.00 0.00 0.76 1.93 0.00 5.47 1.35 0.48 6.69 12.38 0.92 0.00 1.95 1.10 2.08 0.00 12 ER1c ExonRegion 1 19.05 11.75 1.77 1.97 20.37 23.13 16.18 3.84 0.00 16.18 34.79 0.00 10.68 35.10 26.27 58.29 34.84 44.55 2.83 26.48 12.00 10.19 15.34 13 ER1d ExonRegion 1 88.30 43.21 10.22 15.08 89.89 70.26 63.38 43.91 14.28 49.64 125.52 38.42 330.21 122.42 89.49 239.91 106.87 112.19 49.87 82.58 47.66 35.68 128.11 14 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E2b KnownJunction 0 0.00 2.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 3.07 0.00 0.00 0.00 16 E1a_E3a KnownJunction 1 169.14 72.42 19.43 25.94 160.44 109.77 115.97 77.51 25.93 79.05 169.67 92.88 691.35 190.65 138.70 350.34 157.36 170.21 107.77 107.32 63.82 45.50 214.69 17 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 5.56 0.00 2.09 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 5.94 2.78 0.00 7.51 18 ER2a ExonRegion 0 1.14 1.08 0.90 0.25 0.00 0.00 0.70 0.00 0.00 2.73 0.00 2.04 1.44 0.00 1.98 2.34 0.00 2.31 0.00 0.43 0.00 0.00 1.61 19 E2_Ab KnownBoundary 0 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 3.87 2.68 12.60 6.82 0.00 4.45 0.00 0.00 3.61 0.00 3.20 0.00 0.00 0.00 20 ER2b ExonRegion 0 0.95 3.91 0.00 1.76 3.35 0.21 1.74 1.34 0.00 1.47 0.00 2.44 1.00 0.66 1.21 4.41 0.00 1.13 1.58 1.90 0.02 1.03 1.28 21 E2a_E3a KnownJunction 0 0.00 2.63 0.00 0.00 4.33 2.33 1.99 0.00 0.00 0.00 0.00 7.65 6.82 0.00 0.00 0.00 0.00 0.00 0.00 5.62 0.00 0.00 0.00 22 ER3a ExonRegion 0 24.08 16.65 11.75 17.98 37.60 23.80 21.94 47.78 25.11 52.51 100.63 39.04 83.47 73.79 37.65 98.16 84.12 74.17 30.57 50.71 37.88 20.76 48.34 23 E3_Da KnownBoundary 1 13.11 18.62 26.29 36.16 11.12 31.23 11.57 62.56 36.17 49.59 81.76 62.12 77.59 176.94 103.71 321.88 73.77 156.78 99.96 73.89 8.40 62.34 153.40 24 ER3b ExonRegion 1 30.75 42.12 29.90 27.18 73.53 45.60 51.76 54.77 32.46 45.17 86.73 86.85 159.20 107.83 63.53 107.54 85.40 60.83 36.60 61.40 19.76 32.02 54.26 25 E3_Db KnownBoundary 1 104.09 80.71 41.54 21.78 49.41 14.65 30.30 73.85 35.50 63.90 96.87 81.18 87.01 139.27 52.54 83.91 98.46 39.59 38.50 79.90 29.53 51.44 28.43 26 ER3c ExonRegion 1 29.58 40.45 25.40 20.33 41.74 24.64 28.17 49.96 25.06 48.27 81.42 87.49 92.20 106.97 42.35 53.50 97.58 33.39 23.97 59.47 22.79 31.20 21.70 27 E3_Dc KnownBoundary 0 6.67 0.00 4.44 0.00 0.00 0.00 0.00 3.70 0.00 0.00 2.37 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 3.50 28 E3c_E4a KnownJunction 0 34.30 49.27 19.22 22.47 53.48 20.05 51.80 56.02 25.09 41.69 89.60 117.19 104.86 92.94 48.58 56.48 64.42 32.04 12.99 51.13 22.86 33.68 25.61 29 ER3d ExonRegion 0 1.06 0.22 0.98 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.62 3.63 0.00 0.03 2.59 0.00 0.06 0.00 0.00 0.00 0.00 0.93 4.82 30 ER4a ExonRegion 0 30.45 38.74 22.59 29.65 89.78 47.26 55.18 54.44 25.42 44.18 79.77 79.11 78.96 124.66 64.92 82.51 92.49 53.57 36.87 68.33 26.68 23.39 34.50 31 E4a_E5a KnownJunction 0 28.67 40.12 19.13 36.43 40.24 17.60 14.75 42.27 16.64 35.54 56.65 37.36 67.20 95.18 60.94 96.98 92.19 58.45 22.78 49.98 13.10 16.17 15.11 32 ER5a ExonRegion 0 25.44 33.89 21.44 19.00 76.16 37.44 42.41 45.99 20.85 49.65 77.23 56.36 50.17 125.13 68.57 96.77 88.90 63.81 37.78 73.82 26.52 24.22 25.11 33 E5b_E6a KnownJunction 0 24.23 55.19 19.66 18.38 66.98 52.30 59.66 38.69 17.30 50.02 69.07 43.21 46.10 154.98 89.75 124.67 85.93 62.59 51.67 67.56 19.52 36.07 23.47 34 ER5b ExonRegion 0 26.46 41.69 17.16 13.63 134.46 72.44 90.36 41.48 22.85 52.76 86.50 48.71 63.32 160.38 116.05 146.38 100.68 72.06 44.60 84.04 30.85 41.67 29.37 35 ER6a ExonRegion 0 45.20 44.54 35.07 31.72 71.52 30.69 38.90 52.97 33.38 49.64 59.32 64.31 50.21 72.17 76.91 50.96 52.63 36.30 26.84 41.13 12.48 23.64 18.80