Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TAGLN3 Gene 0 24.23 298.46 219.54 123.88 173.11 358.75 131.16 147.50 148.85 237.99 0.00 0.00 0.00 0.22 0.25 0.17 1.69 345.74 164.36 323.84 9.28 7.77 2.93 2 478951 Transcript 0 0.00 34.71 73.79 9.04 20.34 47.36 4.26 21.44 26.63 48.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.63 61.03 102.14 0.00 1.56 0.85 3 393917 Transcript 0 0.79 12.18 13.87 11.46 10.70 22.34 9.91 5.27 16.18 24.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.37 20.42 22.45 0.00 0.00 0.00 4 273368 Transcript 0 0.00 6.05 1.83 5.69 0.00 0.00 0.00 2.01 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 0.00 3.26 0.00 0.00 0.00 5 455401 Transcript 0 0.61 24.54 2.68 5.50 27.39 42.95 32.16 4.01 4.10 7.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.88 21.54 21.31 0.04 0.00 0.05 6 494932 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 486460 Transcript 0 0.32 0.00 0.55 0.00 0.00 0.00 0.20 1.55 3.23 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.48 1.60 0.00 0.00 0.00 8 469385 Transcript 0 0.00 0.00 12.27 4.40 8.40 10.85 4.50 14.09 1.59 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.76 3.58 5.62 0.00 2.57 0.00 9 ER1a ExonRegion 0 0.00 2.46 0.00 0.00 1.80 9.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.17 1.34 0.00 0.00 1.70 10 E1_Ab KnownBoundary 0 0.00 4.87 0.00 0.00 0.00 6.64 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.30 0.00 0.00 2.84 0.00 3.33 11 ER1b ExonRegion 0 2.61 17.39 2.23 0.71 7.17 67.56 4.94 1.39 1.59 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.58 14.05 5.21 0.00 0.33 0.37 12 E1_Ac KnownBoundary 0 11.04 26.05 5.17 1.96 28.44 178.36 10.86 5.50 3.15 5.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.79 34.45 12.46 0.00 2.39 0.00 13 ER1c ExonRegion 0 12.06 140.48 62.21 20.48 89.16 262.56 89.23 31.64 32.49 50.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 108.25 80.97 89.14 2.08 1.44 0.52 14 E1a_E2b KnownJunction 0 0.00 8.09 24.36 20.88 0.00 40.09 13.87 6.65 26.19 38.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.52 39.25 37.46 0.00 0.00 0.00 15 E1a_E2c KnownJunction 0 0.00 6.05 1.83 5.69 0.00 0.00 0.00 2.01 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 0.00 3.26 0.00 0.00 0.00 16 E1a_E2e KnownJunction 0 0.00 66.96 147.57 18.08 38.88 84.72 8.52 42.88 53.27 96.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 170.41 121.89 202.94 0.00 3.12 0.00 17 ER2a ExonRegion 0 0.61 24.54 2.68 5.50 27.39 42.95 32.16 4.01 4.10 7.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.88 21.54 21.31 0.04 0.00 0.05 18 E2_Ab KnownBoundary 0 3.19 92.22 13.60 17.48 97.88 130.44 84.44 21.15 11.26 20.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.80 48.66 65.45 0.00 0.00 0.00 19 ER2b ExonRegion 0 7.15 71.54 36.79 30.86 55.85 144.68 69.05 23.98 25.72 39.27 0.00 0.00 0.00 0.00 0.00 0.00 0.71 71.85 71.85 81.85 1.17 0.00 2.45 20 E2_Ac KnownBoundary 0 6.89 53.15 28.38 15.98 33.02 75.52 43.19 24.32 13.98 14.96 0.00 0.00 0.00 0.00 0.00 0.00 4.39 47.80 31.62 48.26 3.15 0.00 0.00 21 E2_Ad KnownBoundary 0 7.26 122.02 32.44 18.08 67.15 265.98 26.32 27.11 41.87 49.56 0.00 0.00 0.00 0.00 0.00 0.00 4.39 145.87 79.72 131.93 5.44 0.00 8.37 22 ER2c ExonRegion 0 6.35 87.81 31.97 19.39 44.64 176.54 32.86 24.28 28.91 33.78 0.00 0.00 0.00 0.00 0.00 0.00 3.30 71.64 64.00 97.58 5.51 0.00 5.87 23 ER2d ExonRegion 0 28.44 211.46 102.86 66.82 116.12 429.18 102.94 62.98 86.46 121.56 0.00 0.00 0.00 0.00 0.00 0.16 0.54 277.82 172.01 229.90 6.43 4.40 2.82 24 E2_Ae KnownBoundary 0 28.97 219.43 142.40 100.12 96.43 338.16 126.92 95.83 78.91 136.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 355.13 204.15 254.45 0.00 0.00 8.02 25 ER2e ExonRegion 0 24.61 366.95 326.11 142.17 199.47 482.85 180.62 171.08 200.38 286.92 0.00 0.00 0.00 0.72 0.00 0.77 2.79 595.42 274.38 474.68 9.98 7.61 4.79 26 E2a_E4a KnownJunction 0 54.38 859.25 553.91 277.39 656.11 1727.24 663.01 264.48 331.22 408.38 0.00 0.00 0.00 0.00 0.00 0.00 4.77 937.88 347.59 728.08 13.28 5.76 13.06 27 E2a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER3a ExonRegion 0 0.63 0.00 1.10 0.00 0.00 0.00 0.40 3.09 3.45 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.04 0.96 3.19 0.00 0.00 0.00 29 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER4a ExonRegion 0 50.39 710.86 471.85 243.42 383.40 929.94 336.14 273.74 304.16 477.64 0.00 0.00 0.00 0.71 0.00 0.87 4.96 698.86 276.76 709.23 21.36 17.54 4.41 31 E4a_E5a KnownJunction 0 57.94 671.66 580.20 298.66 401.36 520.38 221.52 272.36 311.40 530.68 0.00 0.00 0.00 0.00 0.00 0.00 3.65 707.73 296.20 731.08 17.79 7.96 8.37 32 E4a_E6a KnownJunction 0 0.00 0.00 12.27 4.40 8.40 10.85 4.50 14.09 1.59 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.76 3.58 5.62 0.00 2.57 0.00 33 I4 Intron 0 3.57 27.98 14.02 16.13 34.14 26.70 34.71 26.33 29.28 28.07 0.06 0.17 0.05 0.10 0.09 0.15 1.00 39.15 34.51 39.54 2.00 0.71 0.48 34 I4_SR1 SilentIntronRegion 0 1.59 12.05 7.78 6.83 16.33 13.57 25.98 16.55 22.10 21.65 0.19 0.00 0.00 0.00 0.21 0.31 1.54 45.07 40.01 45.65 1.26 0.32 0.15 35 I4_AR1 ActiveIntronRegion 0 1.73 13.31 7.90 9.89 24.12 12.32 27.70 13.88 19.77 15.34 0.35 0.00 0.00 0.00 0.00 0.00 1.10 22.22 26.90 39.65 1.83 0.35 0.98 36 I4_AR3 ActiveIntronRegion 0 1.07 13.63 4.81 5.12 19.35 11.24 26.64 11.78 10.94 12.75 0.00 0.00 0.00 0.00 0.00 0.00 0.59 22.21 16.85 28.18 0.79 0.00 0.00 37 I4_SR3 SilentIntronRegion 0 2.84 29.54 9.30 15.01 28.87 26.48 35.83 25.55 28.72 26.54 0.00 0.30 0.12 0.05 0.10 0.05 0.87 29.24 30.48 36.98 1.22 0.78 0.32 38 I4_AR4 ActiveIntronRegion 0 5.74 38.89 26.89 34.18 67.58 58.30 51.98 47.94 59.02 56.58 0.00 0.67 0.00 0.06 0.00 0.00 0.00 28.61 36.88 47.85 2.47 2.11 1.10 39 I4_SR4 SilentIntronRegion 0 6.68 54.89 34.87 39.70 97.14 69.99 43.47 50.24 41.33 47.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.66 51.70 58.58 3.48 0.17 0.81 40 I4_AR5 ActiveIntronRegion 0 9.94 61.96 40.44 35.66 88.32 44.66 54.78 44.80 44.93 49.62 0.00 0.00 0.00 0.28 0.35 1.28 1.42 77.07 63.68 43.59 4.41 1.25 1.37 41 I4_SR5 SilentIntronRegion 0 10.97 46.37 28.79 24.86 73.90 44.21 43.29 46.79 40.02 43.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.01 33.39 32.58 3.34 0.96 0.00 42 E5_Aa NovelBoundary 0 17.93 34.73 45.33 20.98 87.01 30.78 31.53 52.86 61.49 40.72 0.00 0.00 0.00 0.00 0.00 4.36 0.00 58.70 34.45 39.88 0.00 0.00 0.00 43 ER5a ExonRegion 0 45.54 543.89 458.74 266.53 264.15 460.30 178.07 281.37 301.68 527.94 0.00 0.00 0.00 0.66 0.00 0.00 3.78 627.18 250.22 713.28 16.35 18.69 3.48 44 E5_Da NovelBoundary 0 14.74 37.49 43.38 47.78 43.21 73.71 43.90 42.22 41.55 57.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.48 56.00 12.21 5.87 0.00 0.00 45 E5a_E6a KnownJunction 0 60.53 617.92 464.59 250.05 400.17 622.26 190.52 349.87 324.50 527.41 0.00 0.00 0.00 0.00 0.00 0.00 8.32 656.00 176.57 767.01 29.71 24.62 0.00 46 I5 Intron 0 7.56 27.30 20.83 29.41 39.60 32.77 26.09 27.50 20.75 30.93 0.00 0.00 0.00 0.00 0.00 0.14 0.30 33.14 18.54 17.06 1.11 0.76 0.00 47 I5_SR1 SilentIntronRegion 0 6.65 25.80 21.73 29.09 37.40 32.16 26.51 27.10 22.57 32.80 0.00 0.00 0.00 0.00 0.00 0.17 0.38 34.41 17.16 17.22 1.15 0.97 0.00 48 I5_AR2 ActiveIntronRegion 0 11.56 34.57 17.99 31.60 49.76 36.86 25.06 30.32 14.47 24.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.04 24.80 17.32 1.04 0.00 0.00 49 E6_Aa NovelBoundary 0 3.19 48.08 47.13 55.17 72.50 59.57 62.31 28.79 27.92 48.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66.28 18.82 30.42 0.00 0.00 0.00 50 ER6a ExonRegion 0 43.97 519.27 462.87 290.14 331.36 532.63 204.02 361.52 328.73 551.52 0.00 0.00 0.00 0.22 0.95 0.00 3.53 734.83 323.43 653.38 20.96 17.41 6.24 51 E6_Da KnownBoundary 0 48.16 323.23 357.68 228.18 219.78 333.27 116.02 304.24 290.45 476.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 380.71 218.74 480.79 16.25 17.02 3.16 52 ER6b ExonRegion 0 25.53 286.66 255.67 176.33 125.32 261.65 97.86 234.09 215.64 337.87 0.00 0.00 0.00 0.00 1.87 0.00 0.00 295.97 158.38 365.31 18.22 13.82 2.49 53 E6_Db KnownBoundary 0 10.22 295.41 237.90 186.06 131.24 242.42 116.19 153.08 142.27 184.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 175.68 138.73 208.31 7.85 7.96 3.84 54 ER6c ExonRegion 0 34.20 401.83 106.47 88.52 268.78 257.43 114.86 90.41 78.49 102.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 100.86 117.70 101.74 1.16 2.97 3.15 55 ER6d ExonRegion 0 4.23 56.94 11.03 6.81 50.84 33.01 14.56 10.37 11.12 29.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.78 19.11 21.28 0.00 0.00 0.00 56 ER6e ExonRegion 0 4.23 42.71 9.80 5.45 45.49 20.17 13.24 6.91 11.12 27.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.93 15.93 14.89 0.00 0.00 0.00 57 ER6f ExonRegion 0 1.59 16.27 3.37 2.04 21.41 4.58 5.96 3.89 6.18 10.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.59 7.45 0.00 0.00 0.00