Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 POPDC2 Gene 0 24.99 6.41 33.98 11.40 14.06 9.33 8.81 21.71 8.95 20.57 12.66 4.90 7.01 7.55 8.12 7.07 10.81 19.01 5.58 5.50 3.68 4.09 2.15 2 474523 Transcript 0 5.03 4.89 7.34 5.25 10.65 13.49 4.43 0.86 1.97 3.15 11.50 3.63 6.46 15.09 16.61 4.10 9.82 3.58 6.10 0.73 7.87 2.13 0.00 3 493094 Transcript 0 1.45 0.48 0.81 3.02 0.74 0.00 0.28 3.36 2.74 0.73 3.29 0.00 0.08 2.00 2.18 0.63 2.10 2.95 0.68 2.26 0.00 0.89 0.04 4 341124 Transcript 0 1.48 1.68 1.30 0.67 1.61 0.00 0.00 2.55 0.90 2.95 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 468801 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 264231 Transcript 0 17.19 0.00 18.04 1.53 0.00 0.00 11.17 9.82 4.63 5.88 4.05 0.00 0.00 0.00 4.45 3.50 0.00 4.27 0.00 0.00 2.47 0.00 3.41 7 468916 Transcript 0 0.00 0.00 18.48 3.26 7.72 0.00 0.00 13.80 8.22 5.53 2.21 0.00 0.00 5.47 0.00 3.25 0.00 12.31 7.44 0.00 0.00 2.51 0.00 8 463323 Transcript 0 16.00 0.00 8.10 1.60 0.00 0.00 4.02 8.21 1.39 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 462098 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 476092 Transcript 0 7.75 1.06 10.96 6.41 3.16 4.08 3.85 7.53 3.79 4.72 5.51 7.68 6.69 4.73 4.69 0.03 9.44 4.18 4.27 2.65 0.25 2.37 1.30 11 495362 Transcript 0 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.49 0.87 0.00 0.00 3.86 0.00 0.00 0.00 0.00 0.00 12 ER1a ExonRegion 0 10.07 9.78 4.39 3.85 18.08 13.41 7.14 1.73 1.40 3.47 17.84 7.25 12.93 18.70 19.25 8.19 15.61 5.59 8.35 1.47 4.50 4.25 0.00 13 E1_Da NovelBoundary 0 0.00 6.05 11.18 5.33 7.81 17.43 12.14 9.08 9.46 10.66 0.00 12.15 0.00 4.65 0.00 11.54 7.85 6.59 3.86 6.07 3.15 0.00 0.00 14 E1a_E2g KnownJunction 0 0.00 0.00 10.29 6.66 3.23 13.57 1.72 0.00 2.55 2.82 5.16 0.00 0.00 11.48 13.97 0.00 4.02 1.58 3.86 0.00 11.24 0.00 0.00 15 Ix Intron 0 2.05 2.95 2.38 5.10 6.01 2.22 3.23 2.92 5.11 5.78 5.74 9.66 17.39 5.63 4.69 4.38 6.86 4.68 2.39 4.42 2.18 1.61 1.42 16 Ix_SR1 SilentIntronRegion 0 2.05 3.00 2.18 5.38 6.26 2.24 2.93 3.01 5.39 6.05 5.85 9.81 17.93 5.86 4.67 4.54 7.06 4.82 2.51 4.49 2.30 1.70 1.49 17 E2_Aa NovelBoundary 0 0.00 3.35 3.67 5.49 0.00 2.90 0.00 4.35 6.37 4.81 4.95 0.00 13.64 4.94 0.00 0.00 25.81 5.14 0.00 6.14 0.00 0.00 3.59 18 ER2a ExonRegion 0 1.45 0.48 0.81 3.02 0.74 0.00 0.28 3.36 2.74 0.73 3.29 0.00 0.08 2.00 2.18 0.63 2.10 2.95 0.68 2.26 0.00 0.89 0.04 19 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER2b ExonRegion 0 47.35 10.28 7.01 1.19 29.43 11.48 4.90 6.75 4.39 3.82 4.44 0.00 4.78 5.08 1.93 0.77 2.14 5.75 2.18 5.32 6.69 0.35 2.61 21 E2_Ac KnownBoundary 0 50.01 12.04 6.39 2.00 19.61 21.46 1.63 3.98 6.54 3.01 7.05 0.00 0.00 2.71 0.00 0.00 4.49 1.70 4.33 5.75 10.56 0.00 0.00 22 E2_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E2_Ae KnownBoundary 0 24.23 0.00 5.50 0.00 23.68 0.00 2.08 0.00 0.00 1.64 2.32 0.00 0.00 4.83 0.00 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E2_Af KnownBoundary 0 111.50 9.21 17.03 3.63 46.60 21.75 24.64 34.34 1.79 4.35 0.00 6.30 0.00 2.12 0.00 0.00 0.00 8.62 0.00 0.00 3.09 0.00 0.00 25 ER2c ExonRegion 0 64.91 10.17 13.48 2.73 50.84 18.34 15.45 17.86 6.18 5.73 7.73 0.00 4.69 6.50 0.00 2.97 3.30 5.54 3.19 10.64 11.02 2.08 0.00 26 ER2d ExonRegion 0 63.50 10.17 13.48 2.73 50.84 18.34 16.55 20.74 6.18 5.73 7.73 0.00 4.69 6.50 0.00 2.97 3.30 5.54 3.19 10.64 11.02 2.08 0.00 27 ER2e ExonRegion 0 69.85 8.38 20.24 2.73 50.30 16.80 21.40 25.17 6.57 9.45 3.71 3.46 3.75 5.46 0.00 2.97 1.45 4.58 1.15 7.06 4.23 2.67 0.23 28 ER2f ExonRegion 0 63.97 6.30 29.10 2.11 23.75 19.44 16.78 28.35 7.13 15.25 3.82 2.38 0.00 1.79 0.00 0.52 0.00 4.11 2.55 1.38 0.99 5.73 2.94 29 E2_Da KnownBoundary 0 10.22 3.16 26.37 0.00 0.00 12.38 4.24 10.43 10.50 20.68 7.05 0.00 0.00 3.00 0.00 0.00 0.00 4.02 8.85 2.88 0.00 5.45 3.41 30 E2a_E2g KnownJunction 0 16.00 0.00 8.10 1.60 0.00 0.00 4.02 8.21 1.39 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER2g ExonRegion 0 10.28 4.17 33.16 6.77 17.68 6.78 8.46 19.13 12.23 20.06 4.81 4.30 6.79 6.91 4.77 4.04 7.05 23.68 2.58 6.36 3.98 3.13 1.85 32 E2_Db KnownBoundary 0 33.12 0.00 34.65 9.99 11.80 5.79 0.00 17.05 9.49 28.10 2.16 5.85 0.00 9.42 4.45 3.85 7.48 21.31 0.00 5.11 0.00 0.00 0.00 33 E2b_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER2h ExonRegion 0 25.10 3.47 35.07 11.61 7.96 6.23 3.69 17.46 8.30 21.31 6.12 1.60 6.74 8.07 9.24 2.40 9.60 14.10 4.44 9.76 1.00 2.35 1.38 35 E2_Ag KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER2i ExonRegion 0 31.99 3.22 42.17 9.66 5.64 7.97 7.19 19.94 10.67 22.17 11.08 5.20 7.68 6.63 7.39 6.56 10.28 27.52 6.05 7.66 2.92 6.12 1.04 37 E2c_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E2c_E4a KnownJunction 0 0.00 0.00 18.48 3.26 7.72 0.00 0.00 13.80 8.22 5.53 2.21 0.00 0.00 5.47 0.00 3.25 0.00 12.31 7.44 0.00 0.00 2.51 0.00 39 Ix_AR2 ActiveIntronRegion 0 4.76 9.53 6.13 8.18 6.52 8.48 5.30 8.64 7.41 10.32 5.32 13.26 0.29 13.30 6.89 2.97 13.20 3.70 3.78 2.93 0.00 0.00 0.00 40 E3_Aa NovelBoundary 0 3.63 5.79 1.15 13.82 15.11 5.34 14.22 5.09 7.09 10.64 20.22 0.00 6.49 0.00 5.07 4.02 12.16 1.87 4.52 0.00 14.27 3.12 4.01 41 ER3a ExonRegion 0 7.75 1.06 10.96 6.41 3.16 4.08 3.85 7.53 3.79 4.72 5.51 7.68 6.69 4.73 4.69 0.03 9.44 4.18 4.27 2.65 0.25 2.37 1.30 42 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER3b ExonRegion 0 20.38 5.87 53.67 21.98 18.41 11.21 10.55 35.69 11.07 38.09 20.64 1.68 10.07 9.64 11.85 11.17 22.49 24.35 3.72 9.46 4.57 4.77 1.39 44 E3a_E4a KnownJunction 0 36.01 5.13 92.87 42.98 53.90 20.27 16.25 50.03 13.40 67.37 36.59 0.00 20.45 17.48 21.88 26.49 37.68 51.90 9.04 15.47 14.83 10.53 0.00 45 ER4a ExonRegion 0 49.06 17.24 90.14 31.48 29.75 26.06 15.40 60.96 21.16 56.79 45.71 15.86 20.14 17.87 20.03 24.13 33.67 51.59 19.91 12.50 13.14 9.03 5.04 46 E4_Da KnownBoundary 0 77.87 9.08 64.99 10.82 27.84 11.30 17.05 30.81 9.90 40.62 20.01 12.45 12.17 17.31 18.42 8.72 13.18 36.02 8.38 12.40 10.75 8.76 7.85 47 ER4b ExonRegion 0 79.19 7.74 89.60 22.77 26.76 6.89 23.51 56.66 16.06 53.96 35.45 20.49 18.65 16.48 22.50 15.73 27.29 62.10 18.57 10.43 10.05 7.11 12.18 48 E4_Db KnownBoundary 0 88.90 15.46 61.41 17.81 40.24 5.79 35.95 41.48 8.25 40.80 43.75 37.81 13.64 24.49 18.91 20.93 30.20 40.71 23.53 12.53 11.00 2.82 16.30 49 E4_Dc KnownBoundary 0 80.98 12.70 78.41 28.40 24.28 26.92 13.60 60.38 21.93 41.58 50.96 5.85 0.00 14.48 20.40 41.78 31.98 36.81 41.32 6.26 2.97 13.53 3.67 50 ER4c ExonRegion 0 81.39 13.31 100.98 32.40 32.72 18.92 23.77 72.12 22.23 60.63 60.89 26.37 8.53 23.03 23.87 32.56 35.11 67.86 39.67 10.64 10.22 9.57 12.01 51 ER4d ExonRegion 0 48.41 7.19 82.13 23.82 31.18 24.12 15.56 51.66 20.24 46.84 36.99 8.00 13.08 14.25 18.61 19.22 18.94 39.98 12.93 10.98 8.05 10.86 10.50 52 E4_Dd KnownBoundary 0 32.08 9.74 46.42 25.37 15.45 19.02 10.16 22.63 8.25 32.31 27.22 6.30 21.75 12.30 4.45 24.95 8.32 27.98 3.95 9.40 5.50 11.94 8.11 53 E4d_E5a KnownJunction 0 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E4d_E6a KnownJunction 0 17.19 0.00 18.04 1.53 0.00 0.00 11.17 9.82 4.63 5.88 4.05 0.00 0.00 0.00 4.45 3.50 0.00 4.27 0.00 0.00 2.47 0.00 3.41 55 E4_Ab KnownBoundary 0 39.34 10.06 43.38 17.95 34.72 11.13 14.18 32.28 7.90 34.76 10.37 12.60 19.48 14.83 15.20 12.39 18.23 24.54 0.00 6.26 8.65 0.00 0.00 56 ER4e ExonRegion 0 35.70 10.78 53.18 25.94 24.62 11.43 10.59 33.53 9.51 42.93 21.39 10.97 15.95 13.75 12.19 21.89 14.96 26.61 1.91 8.01 6.24 8.26 5.68 57 ER4f ExonRegion 0 35.35 19.80 58.82 23.14 25.55 17.15 18.82 39.02 13.01 36.72 20.50 6.75 10.31 13.84 19.50 12.48 20.46 28.17 12.14 8.01 5.26 7.45 1.32 58 E4_De NovelBoundary 0 5.93 2.76 0.00 3.56 3.40 0.00 4.06 8.21 1.79 6.12 7.84 6.30 0.00 0.00 0.00 3.59 7.95 0.00 0.00 3.20 2.47 0.00 0.00 59 E4e_E5a KnownJunction 0 2.96 3.35 2.60 1.33 3.23 0.00 0.00 5.09 1.79 5.91 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E4e_E6a KnownJunction 0 45.56 2.50 72.00 32.83 12.31 12.04 28.13 37.91 10.13 35.54 7.84 6.30 13.47 16.89 28.68 0.00 17.58 35.94 4.80 9.08 3.15 5.45 0.00 61 E5_Aa NovelBoundary 0 20.82 15.06 4.49 21.71 41.60 15.16 1.99 10.84 7.32 5.75 0.00 0.00 12.99 0.00 8.90 8.54 0.00 0.00 0.00 3.07 5.93 0.00 0.00 62 ER5a ExonRegion 0 1.25 0.71 1.33 1.63 0.00 1.99 0.57 1.33 1.85 3.47 0.95 1.36 0.00 0.43 0.73 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E5_Da NovelBoundary 0 41.64 15.26 4.61 14.82 8.15 10.22 7.95 11.30 6.57 13.19 2.68 6.30 13.64 5.06 4.45 3.93 0.00 2.53 0.00 3.26 0.00 2.39 0.00 64 E5a_E6a KnownJunction 0 3.78 0.00 3.67 1.63 0.00 4.20 2.03 0.00 3.36 3.30 2.68 6.30 0.00 4.89 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 E6_Aa NovelBoundary 0 19.63 0.00 5.50 6.46 12.05 2.33 7.77 4.27 3.85 3.68 10.00 0.00 0.00 2.47 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 66 E6_Ab NovelBoundary 0 43.56 8.42 41.57 16.45 10.27 2.21 12.37 23.49 4.75 27.88 4.58 0.00 8.12 2.35 9.64 3.50 3.74 15.50 0.00 2.56 2.53 7.29 3.50 67 ER6a ExonRegion 0 42.97 2.44 84.80 32.85 10.70 12.10 31.11 47.01 21.00 43.93 13.53 11.69 9.38 19.00 25.24 2.97 16.50 35.66 3.19 8.51 4.41 9.17 3.52 68 ER6b ExonRegion 0 46.65 7.93 54.73 24.56 14.93 3.37 24.02 39.96 14.28 31.98 11.60 4.68 5.53 7.15 7.02 6.84 14.85 24.21 1.21 4.72 2.12 11.29 1.88 69 E6_Da KnownBoundary 0 81.13 20.92 30.90 21.78 34.55 10.05 28.00 31.79 18.32 19.31 13.79 0.00 13.80 7.42 9.64 6.84 15.43 25.83 0.00 2.43 2.97 9.00 3.93 70 E6_Db KnownBoundary 0 77.79 19.73 22.06 17.65 29.03 16.30 4.50 9.57 3.04 20.98 10.48 5.40 12.99 4.71 9.89 15.47 7.57 6.80 4.80 0.00 0.00 7.90 4.01 71 ER6c ExonRegion 0 27.35 4.38 25.21 13.16 8.75 5.01 8.76 20.74 7.41 16.94 5.35 0.00 4.69 3.25 3.91 8.80 5.71 11.66 0.00 0.57 0.00 4.33 0.00 72 ER6d ExonRegion 0 15.99 5.23 31.67 13.53 7.93 8.27 8.32 14.33 7.40 14.54 2.13 2.56 5.76 5.99 4.30 6.67 5.85 13.12 2.08 2.75 2.04 4.30 1.36 73 E6_Dc KnownBoundary 0 38.97 9.41 15.08 0.00 28.18 2.90 10.29 7.52 6.86 3.73 2.16 6.30 0.00 7.12 13.97 0.00 0.00 15.01 4.80 2.68 0.00 3.12 0.00 74 E6c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 0.00 0.00 0.00 0.00 75 E6_Dd KnownBoundary 0 59.34 17.56 8.75 2.00 19.10 15.05 21.24 4.39 1.79 3.20 4.95 0.00 0.00 0.00 0.00 0.00 0.00 6.63 0.00 0.00 0.00 0.00 0.00 76 ER6e ExonRegion 0 24.24 8.00 9.17 1.36 10.44 2.90 8.37 3.46 2.15 3.07 0.00 2.65 0.00 1.89 7.02 0.00 0.00 8.70 3.08 0.75 0.00 1.88 0.00 77 ER6f ExonRegion 0 21.67 5.17 0.48 0.14 2.48 3.10 4.98 0.04 0.04 0.24 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 78 ER6g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 ER7a ExonRegion 0 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.97 1.74 0.00 0.00 2.59 0.00 0.00 0.00 0.00 0.00