Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC41A3 Gene 0 69.75 158.66 142.74 146.61 66.38 98.63 39.87 92.26 50.92 130.07 90.64 24.11 40.96 79.14 83.47 74.12 45.87 189.92 139.15 104.59 81.99 91.36 80.60 2 346785 Transcript 0 10.30 19.34 12.89 15.95 8.57 16.52 8.04 8.50 5.93 9.64 23.22 0.00 19.48 9.77 4.45 3.42 0.00 47.84 13.37 11.70 18.66 11.27 23.56 3 315891 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 360370 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 315921 Transcript 0 0.00 0.00 100.59 99.02 0.00 0.00 0.00 38.61 53.56 116.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77.97 0.00 0.00 0.00 0.00 0.00 6 458524 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 383598 Transcript 0 0.00 0.00 0.45 0.12 0.00 0.34 0.24 0.47 0.95 0.63 3.15 0.00 0.00 0.57 0.50 0.00 0.00 0.11 0.78 1.30 1.72 0.38 2.15 8 ER1a ExonRegion 0 3.23 5.97 0.57 0.71 1.62 4.73 0.54 0.78 1.91 0.78 3.04 0.00 0.00 3.92 2.25 3.70 2.97 5.80 9.56 0.73 1.50 0.36 1.42 9 E1_Ab KnownBoundary 0 7.56 5.92 0.00 3.46 3.65 4.37 3.44 0.00 3.18 1.67 0.00 0.00 0.00 7.42 0.00 15.21 12.06 11.65 35.01 0.00 2.41 5.69 4.18 10 E1a_E2a KnownJunction 0 72.61 170.36 47.57 24.77 56.11 190.97 37.27 17.50 14.58 57.19 78.70 5.25 6.01 59.63 79.24 103.90 77.98 153.58 215.82 101.63 94.95 83.83 119.85 11 ER1b ExonRegion 1 25.67 67.24 16.40 10.95 18.90 65.72 13.97 6.75 8.92 25.90 33.05 0.00 0.00 23.47 35.56 47.46 36.10 71.65 100.70 39.53 36.47 30.04 51.44 12 E2_Ab NovelBoundary 1 107.65 313.17 97.04 85.00 101.44 191.99 60.15 45.63 33.48 119.13 170.89 0.00 18.18 69.93 39.93 145.69 103.69 323.09 306.46 166.57 138.32 107.95 173.88 13 ER2a ExonRegion 1 75.36 226.31 56.76 45.22 74.25 178.14 44.49 21.17 21.57 78.81 132.75 0.00 11.22 71.11 84.45 117.40 90.07 204.57 257.56 130.39 116.40 90.11 145.15 14 ER2b ExonRegion 1 9.06 50.59 76.93 49.36 10.73 25.11 8.63 31.43 26.70 88.64 81.98 10.31 9.25 46.31 36.46 36.24 45.65 121.26 102.37 65.97 92.41 63.45 55.36 15 E2_Da KnownBoundary 1 14.37 28.02 135.77 98.46 12.99 19.31 4.15 55.41 24.02 97.64 46.38 20.26 0.00 56.51 75.04 77.59 8.60 125.48 127.34 99.84 65.30 134.16 120.28 16 E2a_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E2_Ac KnownBoundary 0 7.11 43.02 85.48 100.05 19.44 38.10 18.81 66.17 53.07 87.17 86.02 24.01 33.76 54.45 62.92 82.20 35.44 296.10 124.62 96.77 97.98 85.67 85.79 18 ER2c ExonRegion 1 11.34 30.50 128.53 108.11 11.37 24.43 11.44 64.26 48.17 110.80 65.79 22.73 16.42 75.00 93.15 97.44 26.29 204.70 119.79 110.87 84.69 106.85 96.59 19 ER2d ExonRegion 0 13.13 78.68 113.89 109.79 59.02 111.92 28.06 65.05 55.78 122.82 89.45 19.23 32.35 76.45 56.62 52.23 55.05 235.75 90.78 94.18 105.29 86.37 59.38 20 E2b_E4a KnownJunction 0 17.48 170.36 119.24 110.84 92.53 173.37 63.55 75.99 56.25 154.64 110.61 16.96 38.80 69.52 71.70 50.59 63.11 147.57 63.15 90.51 98.29 94.42 53.10 21 E2b_E5a KnownJunction 0 10.30 19.34 12.89 15.95 8.57 16.52 8.04 8.50 5.93 9.64 23.22 0.00 19.48 9.77 4.45 3.42 0.00 47.84 13.37 11.70 18.66 11.27 23.56 22 ER3a ExonRegion 0 0.00 0.00 0.89 0.25 0.00 0.67 0.48 0.94 0.71 1.25 1.18 0.00 0.00 1.15 1.00 0.00 0.00 0.23 1.55 2.60 0.72 0.76 0.21 23 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 5.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 4.10 24 ER4a ExonRegion 0 37.10 167.66 122.22 97.60 39.24 109.81 34.94 87.66 60.81 157.93 99.99 19.32 40.73 88.54 64.34 48.35 42.36 183.73 84.97 105.18 106.15 85.41 58.60 25 E4a_E5a KnownJunction 0 65.72 179.38 124.57 93.59 43.72 86.31 39.39 85.11 56.34 167.78 100.92 42.31 67.20 88.59 86.66 91.94 59.47 291.33 98.07 107.06 97.67 117.32 93.90 26 ER5a ExonRegion 0 52.53 124.22 147.04 152.15 30.33 71.87 30.43 111.37 63.25 174.55 126.60 50.03 84.36 119.89 92.64 91.81 51.71 333.34 154.84 110.70 102.99 107.91 137.37 27 E5a_E6a KnownJunction 1 65.79 126.36 203.16 223.98 38.29 66.27 33.12 128.40 70.89 216.05 110.08 43.21 96.10 161.05 134.87 165.43 47.59 379.30 197.84 148.29 121.82 191.23 180.63 28 ER6a ExonRegion 0 34.83 96.63 139.19 121.22 34.69 65.84 18.88 99.58 55.06 163.59 114.63 30.43 58.29 109.73 92.68 78.48 52.50 214.81 126.71 128.23 124.06 94.82 82.55 29 E6_Da NovelBoundary 0 0.00 3.35 9.88 9.42 0.00 11.24 4.37 10.97 5.12 8.92 24.69 0.00 0.00 22.31 4.45 14.27 8.32 80.67 9.60 12.53 0.00 0.00 19.63 30 E6a_E7a KnownJunction 0 49.56 159.51 161.26 175.90 63.33 169.39 47.39 122.85 55.64 159.24 129.98 23.56 78.73 99.42 112.49 117.23 74.43 286.65 209.79 137.49 167.48 86.22 126.51 31 I6 Intron 1 9.82 12.53 9.45 15.79 13.79 14.77 9.01 13.28 6.88 20.88 21.54 5.57 5.52 14.63 6.87 15.25 9.78 37.42 18.47 23.12 6.48 9.04 11.73 32 I6_AR2 ActiveIntronRegion 1 0.71 2.03 4.90 5.91 3.12 1.83 1.54 8.35 4.94 14.53 13.85 8.66 4.69 22.74 2.90 13.37 0.00 29.56 3.19 19.15 11.02 0.00 5.87 33 I6_AR3 ActiveIntronRegion 1 12.14 15.60 11.90 19.57 16.60 17.64 11.08 15.16 7.82 23.87 25.22 6.68 6.81 15.57 7.51 16.57 10.72 40.88 20.59 26.15 6.75 11.12 14.63 34 E7_Aa NovelBoundary 0 40.01 21.18 6.00 34.13 24.53 32.59 12.85 26.08 8.10 16.14 22.69 12.90 0.00 16.54 22.00 4.19 9.44 53.64 27.20 26.59 2.35 8.76 10.59 35 ER7a ExonRegion 0 82.98 251.14 217.21 246.22 103.55 172.68 66.89 163.57 82.85 204.82 149.54 44.47 116.01 147.56 129.69 168.24 86.07 452.06 279.03 189.53 157.51 158.08 155.44 36 E7a_E8a KnownJunction 0 84.46 278.11 220.66 281.08 137.10 189.27 63.37 141.50 80.84 225.91 135.14 62.72 65.42 168.58 180.98 152.69 71.15 425.27 282.36 156.09 124.42 176.84 141.11 37 ER8a ExonRegion 0 79.10 203.09 231.45 266.82 101.27 154.24 60.78 164.50 85.67 228.23 152.15 49.48 105.54 137.89 161.31 150.06 84.48 374.41 296.59 192.33 152.48 165.50 145.72 38 E8a_E9a KnownJunction 1 153.88 295.87 375.15 364.09 134.72 197.95 52.20 215.47 102.81 277.67 156.62 29.26 129.70 153.39 169.11 144.49 114.35 284.41 277.66 169.38 194.97 175.07 147.68 39 ER9a ExonRegion 0 142.86 303.77 302.57 323.09 125.76 213.73 76.31 192.48 95.52 257.72 165.14 75.06 162.63 186.35 180.86 194.75 106.74 227.43 284.69 199.12 163.46 192.18 155.20 40 E9a_E10a KnownJunction 0 134.84 274.03 311.02 295.17 132.68 207.15 93.27 139.04 85.76 195.10 116.03 55.22 84.90 151.10 145.13 147.82 46.19 234.96 202.55 185.42 85.81 159.82 95.35 41 ER10a ExonRegion 0 162.94 318.97 281.54 270.66 146.81 219.84 77.64 145.72 82.58 190.77 147.33 60.74 79.31 130.60 140.81 137.73 79.73 334.68 265.23 166.68 141.23 146.74 138.04 42 E10a_E11a KnownJunction 0 171.51 334.48 319.44 300.89 148.81 176.38 70.84 145.61 82.70 187.93 129.14 38.11 53.41 98.59 194.20 173.80 56.01 319.73 248.85 196.35 99.15 124.06 124.89 43 ER11a ExonRegion 0 118.34 243.73 242.42 232.04 118.85 175.70 80.47 129.78 85.63 194.10 123.98 37.31 64.28 114.06 146.58 130.73 70.89 255.03 215.15 175.28 115.79 144.78 117.78 44 E11a_E12a KnownJunction 0 137.65 275.87 264.21 226.28 141.68 179.16 75.87 122.03 92.62 204.58 97.02 42.91 19.64 114.90 132.89 139.62 79.01 333.58 214.12 133.97 98.16 100.55 149.21 45 ER12a ExonRegion 0 105.75 257.48 226.25 228.75 114.65 159.98 71.84 141.35 82.09 170.79 109.30 25.01 30.86 104.76 124.08 102.86 65.43 275.93 195.81 156.27 85.71 117.76 113.51 46 E12_Da KnownBoundary 0 140.62 299.03 203.10 209.93 112.14 179.39 76.00 124.29 63.92 149.46 132.45 23.71 33.60 69.10 84.18 32.04 53.20 208.97 170.17 153.98 89.64 81.50 71.02 47 E12a_E12c KnownJunction 0 3.78 14.73 15.58 16.15 4.33 2.73 2.25 11.21 10.88 6.04 14.90 0.00 13.15 17.31 24.85 20.51 4.58 9.87 4.52 7.67 9.08 5.82 3.76 48 ER12b ExonRegion 0 120.02 233.12 198.42 178.67 95.02 147.82 53.35 101.89 71.06 162.66 110.32 22.81 26.65 69.88 82.15 49.29 52.57 190.23 133.86 137.42 78.74 79.94 69.26 49 E12_Db KnownBoundary 0 51.27 76.43 66.02 42.62 56.37 75.52 24.16 21.52 20.14 45.67 49.49 5.55 12.82 28.25 15.33 35.80 32.26 52.81 55.72 64.81 32.12 44.15 33.80 50 E12b_E12b KnownJunction 0 0.00 0.00 100.59 99.02 0.00 0.00 0.00 38.61 53.56 116.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 77.97 0.00 0.00 0.00 0.00 0.00 51 E12_Ab KnownBoundary 0 66.46 83.08 102.78 109.38 30.22 73.48 20.31 37.62 37.88 95.92 28.69 12.45 14.12 25.90 37.09 15.72 12.34 108.40 29.65 37.46 22.61 27.00 37.13 52 ER12c ExonRegion 0 111.33 193.60 193.61 169.27 101.14 157.71 56.40 87.81 70.40 171.58 86.21 30.31 36.58 81.53 69.63 61.23 42.91 221.36 126.14 113.19 60.38 82.51 96.91 53 ER12d ExonRegion 1 121.99 234.94 176.04 192.18 91.78 165.73 67.44 127.32 80.00 173.10 102.30 13.46 18.42 123.00 102.21 98.37 51.38 273.47 198.72 115.53 78.70 117.96 128.40 54 E12_Dc KnownBoundary 0 172.85 277.78 186.30 233.24 135.23 133.96 77.99 141.13 81.97 190.40 121.56 12.60 52.76 106.19 68.24 85.45 52.83 227.04 138.55 143.11 106.75 105.69 130.86 55 ER12e ExonRegion 0 125.43 261.91 215.03 239.48 114.43 133.94 65.01 147.02 67.02 183.62 119.33 27.53 27.19 90.20 118.47 77.52 50.68 225.89 163.85 141.33 91.48 114.53 105.90 56 E12_Ac KnownBoundary 0 173.44 237.33 194.88 222.08 60.02 111.41 28.97 137.35 59.03 174.74 89.08 18.01 27.11 60.75 96.92 39.14 16.74 145.42 110.03 106.93 45.10 75.50 85.28 57 ER12f ExonRegion 0 93.96 170.10 100.12 115.19 62.27 49.02 25.79 74.83 34.72 94.53 72.53 13.79 31.97 55.41 64.72 44.97 21.41 92.77 89.48 55.67 31.96 96.09 42.24 58 ER12g ExonRegion 0 9.74 12.61 0.98 3.27 4.82 8.07 3.97 1.73 3.95 4.13 6.57 0.00 2.81 2.60 3.48 1.78 0.00 5.54 3.19 0.00 0.00 0.83 1.17 59 ER12h ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00