Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UMPS Gene 0 45.50 69.37 60.87 47.81 68.60 37.07 70.09 37.88 16.79 77.43 132.16 100.53 56.66 142.41 124.96 100.85 116.72 61.31 44.67 50.92 45.70 36.93 25.38 2 232607 Transcript 0 18.37 21.88 18.88 18.89 29.33 13.89 30.76 8.00 4.80 33.18 11.27 10.51 5.05 20.71 17.20 9.03 18.75 15.51 16.18 20.62 9.76 5.25 2.81 3 462091 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 467167 Transcript 0 0.00 0.00 1.48 1.66 0.00 0.00 0.00 1.97 0.00 0.00 7.63 5.55 6.01 6.83 0.00 8.37 0.00 5.14 0.00 2.94 0.00 0.00 0.00 5 467014 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 460034 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 479719 Transcript 1 6.29 29.02 12.88 11.74 24.80 7.43 11.16 6.32 0.93 7.99 10.46 8.90 6.84 16.47 7.85 0.78 13.91 20.93 3.61 23.96 2.74 1.37 0.10 8 474588 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 497791 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 498715 Transcript 0 0.00 0.00 0.00 0.00 2.39 0.00 0.00 1.60 0.00 0.16 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 413078 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 487622 Transcript 0 3.25 6.58 4.99 6.19 10.89 1.41 13.75 5.65 0.94 5.67 3.22 4.63 1.16 1.81 5.89 0.38 3.75 1.65 1.63 11.65 1.14 0.80 1.30 13 495751 Transcript 0 2.52 4.20 6.03 1.40 4.88 0.84 4.57 0.59 0.00 3.14 4.47 3.28 6.73 1.15 2.51 0.00 1.52 1.90 2.20 1.47 0.00 0.96 0.00 14 IG17 Intergenic 0 18.43 88.61 33.91 47.82 148.17 143.84 64.08 71.84 58.16 72.98 0.00 0.35 0.00 0.04 0.00 0.00 0.05 18.71 17.89 41.40 0.58 4.52 4.81 15 IG17_SR1 SilentIntergenicRegion 0 5.37 40.48 17.10 22.22 84.12 113.00 47.85 49.54 48.98 55.39 0.00 0.00 0.00 0.09 0.00 0.00 0.00 33.06 19.19 43.43 1.15 5.59 7.41 16 IG17_AR1 ActiveIntergenicRegion 0 11.13 76.40 31.03 43.37 142.34 132.41 76.26 61.61 66.58 77.02 0.00 0.00 0.00 0.13 0.00 0.00 0.32 30.72 20.44 52.93 0.97 6.02 8.20 17 IG17_SR2 SilentIntergenicRegion 0 19.64 123.45 36.80 56.24 231.47 202.52 91.85 88.04 77.15 108.37 0.00 0.00 0.00 0.17 0.00 0.00 0.00 25.46 30.81 64.58 0.00 5.85 9.54 18 IG17_AR2 ActiveIntergenicRegion 0 23.39 114.45 31.59 57.93 231.15 240.99 98.66 86.95 77.94 94.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.54 26.22 58.67 1.06 5.30 5.03 19 IG17_SR3 SilentIntergenicRegion 0 27.28 115.20 29.42 78.01 255.57 280.10 124.43 102.73 78.16 113.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.64 14.43 34.31 0.00 5.82 4.08 20 IG17_AR3 ActiveIntergenicRegion 0 46.83 193.97 83.06 107.29 279.58 255.35 106.90 155.57 105.51 137.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.94 28.74 63.92 0.43 7.22 5.43 21 ER1a ExonRegion 0 0.31 1.11 0.00 0.00 0.00 0.70 0.86 0.00 0.00 0.00 0.74 0.00 0.00 0.12 0.00 0.83 0.58 0.00 0.00 0.59 1.59 0.37 0.00 22 E1_Ab KnownBoundary 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 2.55 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 24 E1_Ad KnownBoundary 0 3.63 9.08 1.27 2.03 10.61 4.66 25.70 1.60 0.00 6.02 6.48 0.00 0.00 5.00 6.06 4.36 8.13 2.32 4.33 5.82 11.80 4.78 0.00 25 ER1b ExonRegion 0 2.12 6.10 0.61 0.00 0.00 3.67 6.62 0.29 0.00 0.00 5.80 0.00 0.00 2.71 0.00 5.94 3.30 0.00 0.00 4.79 11.02 2.08 0.00 26 ER1c ExonRegion 0 2.12 6.10 1.23 1.56 0.00 3.67 6.62 1.73 0.00 1.15 5.80 0.00 0.00 3.25 0.00 5.94 3.30 0.00 0.00 7.90 11.02 2.08 0.00 27 ER1d ExonRegion 1 13.41 11.61 24.77 19.06 19.22 15.16 23.07 16.69 5.30 43.48 73.30 21.35 10.48 51.74 37.83 36.53 85.65 26.43 8.45 28.19 36.03 11.02 4.87 28 E1_Da NovelBoundary 0 0.00 0.00 4.05 1.33 3.90 5.79 0.00 2.55 0.00 3.87 0.00 0.00 0.00 9.24 0.00 4.27 8.70 6.38 3.58 27.16 0.00 0.00 0.00 29 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 2.21 0.00 0.00 14.07 0.00 0.00 12.62 0.00 0.00 3.07 0.00 0.00 0.00 30 E1a_E3a KnownJunction 1 18.60 20.13 64.96 44.92 40.41 5.00 21.86 48.34 17.27 98.80 357.30 44.56 52.43 230.86 131.53 124.50 236.47 71.34 28.14 113.33 94.33 41.94 19.72 31 E1a_E5a KnownJunction 0 3.78 0.00 3.02 3.40 0.00 0.00 0.00 4.39 0.00 15.45 21.06 7.20 0.00 15.25 13.35 3.42 34.50 16.66 0.00 11.44 0.00 2.76 0.00 32 ER2a ExonRegion 0 1.09 2.10 1.66 3.92 2.78 0.02 5.64 1.26 0.00 4.44 4.24 7.17 10.23 12.21 5.30 12.28 11.60 1.40 4.92 6.51 1.14 3.26 1.51 33 E2_Da NovelBoundary 0 11.63 0.00 1.83 0.00 0.00 0.00 1.68 2.22 0.00 3.81 0.00 12.45 22.56 2.47 4.45 4.19 4.11 2.57 0.00 5.05 0.00 0.00 11.52 34 E2a_E3a KnownJunction 0 0.00 0.00 1.48 1.66 0.00 0.00 0.00 1.97 0.00 0.00 7.63 5.55 6.01 6.83 0.00 8.37 0.00 5.14 0.00 2.94 0.00 0.00 0.00 35 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E3_Aa NovelBoundary 0 27.56 27.56 14.25 5.19 12.73 0.00 19.78 1.56 5.12 6.15 7.42 0.00 7.63 4.83 4.45 11.02 0.00 2.40 0.00 8.82 0.00 0.00 0.00 37 ER3a ExonRegion 0 27.75 45.25 69.78 53.06 69.88 61.18 74.06 44.81 25.35 82.72 211.99 126.09 76.53 225.16 165.62 160.03 156.41 89.14 54.07 69.43 52.12 47.20 38.21 38 E3a_E5a KnownJunction 0 42.01 109.32 63.13 44.78 160.19 269.45 333.16 57.22 28.15 89.56 276.96 288.09 119.47 218.02 183.57 149.45 197.66 54.59 27.58 96.07 88.28 51.62 32.52 39 E3a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 2.39 0.00 0.00 1.60 0.00 0.16 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E5_Aa NovelBoundary 0 13.85 5.00 25.78 7.36 4.24 6.98 15.06 4.15 0.00 3.98 5.21 25.06 20.45 12.30 0.00 7.86 0.00 6.84 0.00 2.81 0.00 3.12 4.10 42 ER5a ExonRegion 0 63.03 94.42 96.38 69.39 87.67 70.68 102.81 64.85 29.71 127.30 311.28 295.87 140.89 304.58 221.29 237.12 263.73 132.29 73.08 88.00 102.44 77.04 47.87 43 E5_Ab KnownBoundary 0 71.42 100.44 165.28 101.12 77.76 38.95 118.40 99.03 35.62 179.49 413.26 392.53 161.68 382.19 249.95 252.07 307.99 142.77 97.51 106.17 152.78 64.36 67.69 44 ER5b ExonRegion 0 70.71 113.80 144.32 95.89 107.20 83.91 121.86 64.47 27.05 148.48 356.82 326.89 144.78 370.27 249.34 263.02 296.28 148.48 90.95 98.20 140.14 75.79 65.70 45 E5_Ac KnownBoundary 0 84.53 144.84 150.38 87.20 137.95 110.62 159.91 64.65 27.26 108.58 264.91 312.70 140.58 345.99 261.57 267.37 205.14 140.32 51.86 87.82 84.57 69.07 83.31 46 E5_Da KnownBoundary 0 194.18 255.94 107.27 88.57 203.82 127.31 231.99 55.94 22.60 119.91 434.16 305.80 175.96 368.53 278.14 511.06 405.14 189.61 143.25 71.08 141.66 109.00 102.78 47 E5a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER5c ExonRegion 0 125.84 205.39 162.97 118.46 182.84 125.00 204.61 82.32 35.46 154.64 406.55 319.66 181.54 374.63 277.31 431.83 359.80 228.04 113.35 91.84 139.48 108.86 105.35 49 ER5d ExonRegion 0 98.47 156.67 135.43 105.33 123.24 70.87 128.54 69.26 30.72 136.97 311.83 217.24 144.29 361.70 237.56 248.10 287.20 132.86 90.20 80.35 109.84 77.03 63.60 50 E5_Ad KnownBoundary 0 130.02 221.80 152.21 134.32 201.10 125.33 174.18 62.68 46.06 185.97 305.55 260.78 188.14 324.56 300.88 244.64 237.03 139.82 86.40 72.29 57.64 59.52 66.24 51 ER5e ExonRegion 0 99.26 184.64 155.79 131.01 140.38 107.14 183.09 68.42 35.25 147.80 331.44 278.77 166.11 373.20 290.10 268.81 255.18 139.30 83.29 81.32 88.54 86.58 49.19 52 E5_Db KnownBoundary 0 13.19 30.39 26.61 53.34 18.34 8.52 25.13 27.85 2.84 24.07 39.64 60.77 25.97 21.54 4.45 13.76 16.27 17.37 4.80 26.72 5.44 6.06 0.00 53 E5b_E7a KnownJunction 0 107.95 187.86 118.74 62.60 124.19 78.88 196.04 57.75 37.12 123.75 269.23 195.96 156.81 295.84 275.54 273.95 206.54 89.17 79.63 76.06 84.63 89.22 44.22 54 E5b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER5f ExonRegion 0 12.25 31.46 22.06 31.91 13.54 4.35 27.32 20.00 4.73 19.59 22.07 24.70 21.57 19.19 11.80 14.75 25.28 22.44 8.98 23.95 7.00 8.30 1.13 56 E5_Dc KnownBoundary 0 21.19 35.06 21.29 20.98 26.23 7.78 19.39 16.80 4.37 20.47 27.95 12.30 0.00 10.30 6.18 3.76 36.37 19.11 3.86 20.07 5.62 2.76 4.35 57 ER5g ExonRegion 0 9.76 35.67 15.56 12.93 30.66 9.58 14.95 8.38 1.87 13.08 20.91 17.80 13.68 16.99 6.93 1.57 19.12 21.84 7.21 19.36 5.48 2.75 0.20 58 E5d_E7a KnownJunction 0 2.82 22.36 10.20 10.55 18.93 5.28 7.38 4.27 0.00 2.90 0.00 0.00 0.00 15.95 8.78 0.00 8.70 20.02 0.00 28.57 0.00 0.00 0.00 59 E6_Aa NovelBoundary 0 6.96 15.33 21.17 13.95 0.00 2.21 18.28 11.01 5.87 16.33 20.11 25.81 12.82 4.89 0.00 7.86 16.83 1.95 0.00 11.44 0.00 5.69 0.00 60 ER6a ExonRegion 0 2.15 8.41 7.51 2.80 9.76 1.69 9.14 1.18 0.00 6.28 6.46 6.55 6.97 2.30 5.02 0.00 3.03 3.80 4.39 2.93 0.00 1.91 0.00 61 E6_Da NovelBoundary 0 0.00 9.67 19.01 10.02 15.62 0.00 15.99 10.06 2.40 11.66 18.74 12.60 13.15 16.83 10.88 0.00 8.51 0.00 0.00 11.44 0.00 5.14 0.00 62 E6a_E7a KnownJunction 0 2.89 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 I6 Intron 0 7.62 16.65 10.76 13.98 15.07 7.46 19.05 13.16 3.07 11.94 9.88 17.28 8.98 9.28 5.11 6.97 8.95 4.41 2.32 9.32 1.61 5.11 3.06 64 I6_SR1 SilentIntronRegion 0 7.63 16.70 10.79 14.02 15.11 7.48 19.11 13.20 3.08 11.98 9.91 17.33 9.00 9.30 5.12 7.00 8.98 4.43 2.33 9.35 1.61 5.12 3.07 65 E7_Aa NovelBoundary 0 10.67 12.89 16.32 17.65 34.13 11.36 23.23 13.47 0.00 4.81 14.58 12.00 12.82 7.42 0.00 11.88 27.86 4.56 3.76 3.20 8.53 0.00 4.35 66 E7_Ab NovelBoundary 0 82.98 192.93 96.42 61.10 178.44 97.50 157.22 60.05 30.18 91.22 218.11 187.56 78.08 160.99 163.42 188.75 160.82 91.69 100.61 65.96 85.69 54.99 81.78 67 ER7a ExonRegion 0 92.90 205.82 118.67 71.59 155.33 89.18 177.76 61.13 33.80 119.58 293.29 215.11 133.05 277.04 262.33 268.59 232.97 112.71 103.44 88.47 91.63 84.77 77.43 68 ER7b ExonRegion 0 99.31 178.75 121.89 81.23 135.90 78.22 119.81 69.61 29.88 119.21 231.87 220.28 111.01 301.18 285.62 201.73 209.85 110.10 69.35 79.56 99.11 56.08 63.28 69 E7a_E8a KnownJunction 0 118.39 151.49 131.46 81.64 106.37 77.34 144.15 90.49 22.48 137.86 192.15 163.70 79.70 233.62 277.27 137.40 198.13 84.69 80.38 75.81 86.12 70.30 29.36 70 ER8a ExonRegion 0 136.43 171.58 124.86 89.06 129.99 71.12 118.36 101.42 34.07 148.73 253.46 146.49 90.17 323.98 318.38 211.00 261.26 99.54 86.42 97.72 80.18 71.31 57.02 71 E8_Da KnownBoundary 0 3.11 8.42 1.74 9.09 4.24 0.00 21.95 11.75 0.00 6.82 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 15.15 0.00 0.00 8.11 72 E8a_E9a KnownJunction 0 173.96 316.13 139.88 77.98 255.09 71.78 179.26 101.04 38.54 141.78 272.28 119.74 77.75 350.82 346.25 251.56 240.86 147.49 89.32 79.58 81.24 59.70 86.64 73 ER8b ExonRegion 0 3.25 6.58 4.99 6.19 10.89 1.41 13.75 5.65 0.94 5.67 3.22 4.63 1.16 1.81 5.89 0.38 3.75 1.65 1.63 11.65 1.14 0.80 1.30 74 E8_Db NovelBoundary 0 3.48 12.10 10.53 7.62 11.46 4.83 32.28 0.00 1.36 12.46 7.79 0.00 6.17 4.89 9.64 0.00 0.00 2.57 3.86 11.82 0.00 2.88 4.10 75 I8_AR1 ActiveIntronRegion 0 0.77 2.91 0.84 9.01 2.19 0.00 6.38 6.13 2.86 2.74 3.73 2.76 18.97 1.96 0.00 1.96 3.83 1.81 3.76 0.68 0.00 2.98 0.00 76 E9_Aa NovelBoundary 0 11.34 15.26 10.29 16.02 20.03 2.50 56.35 6.78 3.15 9.72 0.00 0.00 20.62 9.89 0.00 8.54 7.48 5.68 3.86 20.90 2.66 0.00 4.35 77 ER9a ExonRegion 0 78.41 166.84 142.51 96.28 192.57 75.20 138.48 108.56 44.54 166.62 309.05 148.34 93.65 297.12 381.40 233.10 250.61 108.51 109.38 104.50 94.38 81.93 53.65 78 E9_Da KnownBoundary 0 82.76 88.08 121.76 106.15 129.37 38.33 113.72 109.34 49.22 181.64 310.71 244.13 91.23 393.67 525.62 282.58 210.75 86.14 89.04 111.98 97.30 157.55 58.99 79 ER9b ExonRegion 0 78.15 99.61 83.61 68.32 133.35 38.77 103.09 70.43 35.71 140.37 223.87 139.05 76.89 179.57 227.91 125.57 179.64 52.02 73.97 75.63 42.46 89.67 32.20 80 E9_Db KnownBoundary 0 19.04 43.28 41.48 37.02 85.99 24.08 96.19 25.14 16.52 74.76 56.75 73.67 32.63 58.80 19.78 42.47 23.47 29.39 54.59 49.86 6.18 26.94 6.66 81 ER9c ExonRegion 0 31.37 31.11 25.24 25.50 33.69 14.70 50.97 18.24 8.47 57.32 26.38 34.25 27.31 46.87 52.05 27.52 25.99 50.49 34.74 38.13 22.82 18.79 13.81 82 E9_Dc KnownBoundary 0 144.25 58.67 28.71 43.65 59.93 23.74 60.46 26.66 9.75 68.36 38.80 43.96 6.82 52.21 38.69 27.34 36.84 43.86 36.61 28.57 26.75 16.78 15.54 83 ER9d ExonRegion 0 36.42 42.64 37.77 37.79 58.65 27.08 60.67 16.00 9.61 66.37 21.80 21.01 10.09 41.31 34.41 17.23 36.92 31.01 32.35 40.65 17.93 10.14 5.61 84 IG18 Intergenic 0 5.10 11.36 19.04 17.48 17.63 8.00 20.06 7.86 4.36 33.31 5.13 5.84 3.14 9.24 8.50 6.20 5.60 17.45 10.63 12.47 6.89 5.10 3.31 85 IG18_SR1 SilentIntergenicRegion 0 7.33 14.87 25.13 23.65 26.00 13.76 38.09 11.65 7.08 51.80 14.69 12.99 3.88 18.52 15.16 13.73 18.11 39.43 23.91 21.70 16.11 9.02 5.93 86 IG18_AR1 ActiveIntergenicRegion 0 12.86 17.70 43.64 35.03 36.70 15.06 39.58 17.98 10.13 82.26 10.95 9.27 7.27 25.70 19.34 21.72 14.37 54.46 28.51 31.45 19.00 15.40 7.47 87 IG18_SR2 SilentIntergenicRegion 0 4.32 19.36 2.48 6.91 7.28 7.48 18.01 1.75 0.00 6.97 3.92 9.70 2.63 6.24 5.34 12.13 8.98 14.31 2.17 10.13 13.46 4.25 3.99 88 IG18_SR3 SilentIntergenicRegion 0 4.04 20.45 27.54 16.50 13.44 13.60 24.65 7.40 3.97 43.23 7.41 11.34 2.64 13.10 16.81 14.94 6.32 32.29 10.69 16.78 15.80 7.94 9.84 89 IG18_AR3 ActiveIntergenicRegion 0 9.30 25.49 39.36 36.94 35.80 15.95 36.64 14.25 7.94 55.12 8.18 11.37 7.21 14.50 14.89 6.24 7.11 21.46 16.03 22.02 8.31 7.52 4.17