Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	IFT57	Gene	0	67.56	48.64	59.80	26.21	85.01	49.91	54.31	42.17	49.31	53.22	70.88	69.34	58.18	68.97	55.37	132.86	110.90	14.61	71.14	32.47	72.80	135.02	53.85
2	264538	Transcript	0	7.49	5.39	6.33	3.02	9.62	5.41	5.50	4.16	3.95	3.41	2.20	4.18	1.62	2.15	2.12	5.95	2.82	0.49	5.03	3.08	2.22	9.71	2.67
3	478157	Transcript	0	0.00	6.05	1.51	1.86	3.82	2.38	7.91	8.79	9.95	4.92	2.63	6.15	0.00	4.94	4.45	11.96	4.02	6.80	0.00	8.88	3.15	0.00	3.59
4	492106	Transcript	0	0.00	0.00	0.49	0.00	0.00	1.10	0.00	0.00	0.00	0.23	0.00	0.00	0.00	0.00	0.58	0.00	0.00	0.00	0.00	0.00	0.44	0.00	0.00
5	465024	Transcript	0	0.82	0.00	3.45	0.75	0.83	0.71	0.97	0.00	1.46	0.01	4.86	3.25	1.49	0.00	0.00	6.26	1.28	0.71	1.23	0.90	0.05	0.81	1.13
6	457963	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	485979	Transcript	0	1.45	1.46	0.65	0.00	0.98	0.00	2.38	0.00	4.12	0.03	2.72	2.26	0.00	0.00	0.86	1.11	1.21	0.00	0.00	0.76	0.00	1.53	0.00
8	468021	Transcript	0	18.64	15.86	4.30	4.99	18.10	9.65	11.32	11.48	14.91	6.22	5.25	16.91	17.61	13.57	1.77	14.10	8.51	2.61	5.46	4.14	3.49	18.95	4.14
9	ER1a	ExonRegion	0	1.40	1.14	0.86	0.00	0.00	0.08	0.87	0.00	0.00	0.10	1.69	0.00	0.00	1.68	1.28	3.85	1.38	0.00	0.00	0.00	1.15	0.26	0.00
10	E1_Ab	KnownBoundary	0	3.78	8.49	3.67	0.00	0.00	0.00	2.25	0.00	0.00	0.00	5.11	0.00	0.00	0.00	8.90	7.35	0.00	0.00	3.58	0.00	2.41	2.39	0.00
11	ER1b	ExonRegion	0	25.29	21.18	13.42	1.66	23.86	47.22	30.01	4.75	6.09	11.01	16.69	0.00	2.74	16.73	14.41	48.50	47.59	3.57	16.99	9.79	43.01	42.40	29.27
12	E1_Ac	KnownBoundary	1	55.94	61.04	25.52	3.73	55.43	145.26	56.75	11.87	21.93	15.18	29.22	0.00	6.66	12.24	19.66	50.07	102.48	13.76	28.71	9.72	59.24	76.66	57.96
13	E1_Ad	KnownBoundary	1	150.32	83.08	43.29	13.72	104.33	217.15	121.14	30.07	28.01	33.17	75.39	0.00	0.00	82.94	36.10	405.45	115.19	40.67	130.54	63.21	169.15	106.79	198.04
14	ER1c	ExonRegion	1	89.32	71.99	33.98	6.81	93.65	185.82	94.00	18.67	26.60	30.20	67.26	0.00	9.38	79.80	42.75	296.62	147.66	19.71	93.65	49.08	149.12	121.68	149.96
15	ER1d	ExonRegion	1	59.54	39.71	31.73	6.71	64.92	135.80	56.72	22.83	29.48	29.76	63.38	7.52	17.16	54.71	26.72	328.03	111.80	19.94	76.53	36.11	117.72	78.35	125.12
16	E1_Ae	KnownBoundary	1	23.12	8.75	2.90	0.00	22.41	54.40	5.83	10.19	11.31	4.41	37.06	12.00	38.31	14.89	9.39	188.58	66.48	8.46	24.28	8.12	36.26	34.60	45.67
17	ER1e	ExonRegion	1	18.57	14.52	58.52	16.86	30.42	20.94	16.01	33.11	48.43	45.96	97.08	14.38	18.05	86.60	52.02	264.74	151.29	52.20	102.76	45.34	174.65	147.15	131.58
18	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	4.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E1a_E2a	KnownJunction	1	24.37	38.74	100.29	19.34	125.47	155.08	64.35	14.83	46.06	70.67	143.56	18.31	38.15	82.82	62.30	258.48	104.63	49.21	90.64	51.20	235.80	145.74	88.27
20	E1a_E3a	KnownJunction	0	0.00	6.05	1.51	1.86	3.82	2.38	7.91	8.79	9.95	4.92	2.63	6.15	0.00	4.94	4.45	11.96	4.02	6.80	0.00	8.88	3.15	0.00	3.59
21	ER1f	ExonRegion	0	0.00	0.00	0.00	0.00	4.40	0.04	0.01	0.02	1.04	0.01	1.25	0.00	0.00	1.99	1.12	0.54	0.00	0.00	0.10	0.02	0.02	0.04	0.00
22	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E2_Ab	NovelBoundary	1	61.20	65.91	114.72	15.52	131.49	217.37	144.41	29.61	62.85	59.26	141.88	29.56	20.45	113.66	55.38	174.14	212.72	27.36	111.44	70.24	247.97	211.93	70.94
24	ER2a	ExonRegion	1	41.02	46.91	98.83	16.45	104.54	164.66	92.22	23.84	59.54	65.06	146.03	31.95	29.43	103.16	47.82	210.82	153.21	40.01	109.29	55.91	241.95	179.33	78.38
25	ER2b	ExonRegion	0	150.16	142.05	121.12	38.21	132.51	172.08	135.97	57.34	75.82	96.01	179.14	82.00	72.87	154.27	91.17	250.52	251.29	31.65	119.24	74.71	232.16	262.48	76.94
26	E2a_E3a	KnownJunction	0	316.13	163.33	137.10	43.32	98.81	124.70	93.45	77.71	80.53	133.99	159.94	92.58	109.73	131.03	89.87	262.67	242.26	26.90	89.79	89.16	199.36	320.25	84.94
27	ER2c	ExonRegion	0	0.00	0.00	0.49	0.00	0.00	1.10	0.00	0.00	0.00	0.23	0.00	0.00	0.00	0.00	0.58	0.00	0.00	0.00	0.00	0.00	0.44	0.00	0.00
28	ER3a	ExonRegion	0	225.88	136.75	138.11	57.26	145.48	97.95	124.14	108.11	130.41	146.54	206.04	165.14	196.23	175.45	110.47	305.93	313.50	24.13	146.53	81.37	140.04	358.23	102.96
29	E3_Da	KnownBoundary	0	2.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.16	0.00	0.00	6.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E3a_E4a	KnownJunction	1	233.00	134.78	166.05	89.03	187.86	144.46	161.50	127.33	121.32	172.86	174.31	222.97	271.41	185.71	134.25	298.30	315.47	19.98	91.77	94.66	95.63	304.82	56.25
31	ER3b	ExonRegion	0	1.45	1.46	0.65	0.00	0.98	0.00	2.38	0.00	4.12	0.03	2.72	2.26	0.00	0.00	0.86	1.11	1.21	0.00	0.00	0.76	0.00	1.53	0.00
32	ER4a	ExonRegion	0	171.83	138.98	148.35	79.41	259.43	121.51	162.35	124.58	148.35	160.78	203.25	270.28	268.67	173.17	117.39	326.61	273.43	23.45	150.55	78.65	81.39	400.61	117.63
33	E4_Da	KnownBoundary	0	0.00	0.00	9.58	0.00	3.48	0.00	1.72	1.85	4.08	0.00	2.68	12.60	5.84	0.00	0.00	4.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E4a_E5a	KnownJunction	0	283.09	194.37	211.32	110.97	551.36	180.92	304.50	179.74	210.24	183.47	273.91	295.90	217.36	198.36	132.52	418.52	279.94	37.23	196.81	76.38	106.57	524.53	196.08
35	ER4b	ExonRegion	0	0.82	0.00	3.45	0.75	0.83	0.71	0.97	0.00	1.46	0.01	4.86	3.25	1.49	0.00	0.00	6.26	1.28	0.71	1.23	0.90	0.05	0.81	1.13
36	ER5a	ExonRegion	0	201.16	166.46	172.17	108.12	398.49	200.97	232.58	138.25	181.96	187.78	239.54	296.47	283.98	217.68	158.60	393.27	379.32	29.35	259.26	92.97	177.03	493.04	182.45
37	E5a_E6a	KnownJunction	1	231.89	146.42	161.85	126.59	279.88	192.28	229.20	119.24	170.95	204.74	164.41	371.22	325.95	259.99	174.30	404.25	377.28	27.48	189.46	102.59	203.49	336.54	140.08
38	ER6a	ExonRegion	0	194.89	169.89	196.03	96.42	248.26	144.83	191.77	116.57	175.74	183.94	230.45	334.60	338.75	257.39	159.45	422.36	392.40	22.70	237.61	102.23	228.22	382.03	160.23
39	E6a_E7a	KnownJunction	0	222.11	231.01	198.43	92.96	256.20	126.97	226.25	113.78	156.51	167.51	258.54	381.57	297.06	238.16	144.26	529.86	403.74	37.31	218.55	114.99	267.25	418.10	246.70
40	ER7a	ExonRegion	0	210.92	167.71	166.46	85.80	276.09	115.22	164.54	105.56	140.49	162.59	253.88	243.89	193.92	250.27	183.06	433.23	413.07	38.49	260.85	116.05	261.97	334.81	212.58
41	E7_Da	NovelBoundary	0	9.93	3.35	0.00	4.40	12.39	10.96	15.24	9.00	24.65	10.13	12.11	11.70	6.82	9.42	0.00	19.05	26.09	0.00	0.00	5.37	6.30	21.49	3.67
42	E7a_E8b	KnownJunction	0	271.23	183.26	232.19	96.42	356.79	164.34	153.07	138.75	157.43	195.58	216.74	199.11	193.17	286.19	209.16	419.63	386.16	41.37	255.16	101.82	262.55	323.62	197.79
43	E8_Aa	NovelBoundary	0	16.60	27.63	10.35	2.06	3.31	2.78	16.38	13.60	9.26	8.41	5.00	28.36	12.66	11.54	0.00	7.43	0.00	2.03	4.61	5.62	3.15	20.27	0.00
44	ER8a	ExonRegion	1	18.64	15.86	4.30	4.99	18.10	9.65	11.32	11.48	14.91	6.22	5.25	16.91	17.61	13.57	1.77	14.10	8.51	2.61	5.46	4.14	3.49	18.95	4.14
45	E8_Ab	KnownBoundary	0	38.45	17.96	6.21	11.89	27.16	2.61	7.77	25.75	25.55	9.27	9.16	13.95	13.64	15.19	0.00	26.83	21.97	1.66	8.56	3.13	3.15	44.39	0.00
46	ER8b	ExonRegion	0	247.31	172.48	209.64	71.62	334.04	180.86	202.43	132.58	124.75	160.91	233.53	240.57	217.53	295.60	197.93	507.46	401.80	56.12	273.21	99.07	284.70	319.78	189.02
47	E8_Da	NovelBoundary	0	3.04	19.93	5.06	11.35	4.33	5.51	13.96	9.28	15.34	12.17	5.37	12.60	0.00	2.47	0.00	3.76	9.16	4.15	0.00	8.50	5.81	30.00	0.00
48	E8a_E9a	KnownJunction	0	228.11	116.95	220.42	63.73	293.63	174.10	216.09	101.41	83.48	145.38	127.77	199.11	197.06	217.55	203.72	417.41	260.03	59.69	252.62	63.47	216.90	243.53	155.45
49	I8_AR2	ActiveIntronRegion	0	7.81	4.35	2.96	5.87	15.69	8.47	18.31	9.24	10.39	11.82	3.67	19.71	32.35	5.26	0.00	1.33	0.23	0.00	8.24	0.07	6.61	12.14	5.87
50	I8_SR1	SilentIntronRegion	0	6.71	9.51	2.60	6.02	32.87	10.86	20.82	6.52	6.14	10.15	1.58	14.76	15.81	5.26	3.40	5.41	1.54	0.90	1.55	1.03	0.73	21.33	7.86
51	I8_AR3	ActiveIntronRegion	0	9.19	7.93	4.68	4.30	16.69	6.94	9.14	3.73	9.43	7.42	3.87	7.32	15.58	5.35	1.14	9.93	9.19	3.07	2.83	3.08	5.88	14.84	8.50
52	ER9a	ExonRegion	0	158.45	98.92	178.82	60.38	222.68	99.43	142.97	107.57	89.91	130.71	166.95	166.35	110.73	181.10	185.24	411.46	342.68	60.00	231.29	84.46	215.89	294.24	159.08
53	E9_Da	NovelBoundary	0	55.42	38.48	77.47	30.43	64.43	27.48	57.63	59.48	38.92	58.42	52.96	38.56	18.02	46.50	36.22	117.49	134.27	27.69	55.63	24.35	100.20	80.15	64.02
54	E9b_E10a	KnownJunction	1	167.07	102.55	180.24	72.02	216.72	106.13	167.20	114.64	104.69	116.85	218.63	257.18	88.47	206.13	189.51	366.40	331.28	40.54	194.64	90.95	210.17	266.92	177.98
55	ER9b	ExonRegion	0	167.20	109.30	160.22	63.37	226.77	97.65	151.59	118.40	103.13	116.12	211.65	201.32	84.42	194.49	180.60	381.92	360.62	56.36	202.27	96.28	207.15	265.13	172.53
56	I9	Intron	0	24.44	19.61	7.43	9.55	35.08	12.60	20.54	9.97	18.17	15.05	7.55	17.48	11.97	11.82	4.98	14.97	8.26	1.91	6.27	4.90	3.45	27.66	6.56
57	I9_AR1	ActiveIntronRegion	0	18.73	19.02	4.13	7.25	27.25	9.25	15.53	7.08	17.35	12.15	8.91	7.44	5.96	11.26	2.97	20.58	9.94	3.55	5.76	6.13	5.23	25.07	9.42
58	I9_SR1	SilentIntronRegion	0	16.21	17.07	6.53	8.30	34.47	12.72	18.56	13.18	21.50	12.72	8.06	17.45	11.19	14.69	1.97	13.60	11.87	1.25	6.57	3.66	3.26	23.05	8.09
59	I9_AR2	ActiveIntronRegion	0	31.48	21.29	9.41	11.28	38.99	14.07	23.89	9.55	16.80	17.64	6.67	22.04	15.11	10.54	7.50	13.23	5.58	1.53	6.35	5.02	2.77	31.38	4.48
60	E10_Aa	NovelBoundary	1	44.67	31.51	38.70	14.32	43.46	10.11	26.14	37.30	29.92	20.95	0.00	61.52	13.31	19.25	10.14	4.10	12.81	4.35	9.60	12.34	0.00	23.70	3.41
61	ER10a	ExonRegion	0	180.41	102.23	189.35	74.33	215.86	110.58	134.57	148.44	133.96	150.55	215.53	186.49	127.82	289.29	286.92	437.26	351.13	46.17	265.43	109.72	227.57	462.63	209.73
62	E10_Da	NovelBoundary	0	34.82	17.43	13.25	6.99	31.32	36.29	15.81	11.62	4.46	9.48	0.00	12.45	13.47	2.35	0.00	3.85	8.32	2.57	0.00	0.00	0.00	20.39	0.00
63	E10a_E11a	KnownJunction	0	191.52	135.77	216.40	93.06	218.08	107.21	136.20	201.71	176.39	201.12	234.85	146.90	123.21	197.89	266.64	450.74	470.41	41.25	263.91	100.73	272.13	490.73	166.03
64	I10	Intron	0	30.96	17.27	11.77	14.54	31.07	12.38	16.32	12.25	14.03	13.20	3.86	11.31	6.34	5.45	4.48	5.93	6.42	1.74	3.75	0.98	2.25	22.81	4.36
65	I10_AR1	ActiveIntronRegion	0	26.08	16.14	8.54	14.88	24.43	16.04	15.06	11.79	16.17	16.44	3.63	15.32	5.74	5.56	3.15	4.11	8.31	1.98	4.98	1.22	2.31	26.68	4.77
66	I10_AR2	ActiveIntronRegion	0	24.22	14.24	20.97	10.60	16.35	4.69	8.53	15.17	15.51	15.93	3.87	4.33	7.82	2.53	2.90	2.97	4.03	1.44	0.71	1.65	2.69	16.44	2.94
67	I10_AR3	ActiveIntronRegion	0	36.76	18.68	15.25	14.33	39.04	8.51	17.99	12.76	11.65	9.54	4.13	7.01	7.01	5.41	6.03	8.08	4.36	1.49	2.43	0.70	2.18	18.70	3.94
68	E11_Aa	NovelBoundary	0	20.89	20.79	39.77	25.60	65.03	0.00	10.02	26.08	25.29	19.07	1.95	6.30	6.82	4.89	0.00	0.00	22.44	4.52	0.00	9.01	3.09	19.41	8.11
69	ER11a	ExonRegion	0	130.23	76.03	112.36	55.85	167.11	70.77	82.46	98.37	109.33	114.26	118.34	134.22	73.92	92.95	135.09	184.43	170.80	22.16	105.94	48.07	90.71	317.52	66.23
70	E11_Da	KnownBoundary	0	22.52	11.64	22.06	4.10	15.70	18.68	24.69	15.16	11.98	11.95	2.68	17.11	7.30	4.94	20.77	4.36	9.44	2.16	0.00	5.88	8.71	25.78	12.04
71	ER11b	ExonRegion	0	13.58	9.65	11.81	6.05	19.23	10.75	10.14	8.32	7.90	6.72	2.72	8.36	3.23	2.61	2.95	8.05	4.25	0.97	10.06	6.16	3.28	19.15	5.34
72	IG34_AR16	ActiveIntergenicRegion	0	5.46	0.00	0.00	2.20	21.32	2.32	3.52	4.24	1.60	0.23	97.97	26.23	40.99	110.32	38.75	87.89	47.22	0.00	0.00	0.00	0.00	0.00	0.00
73	IG34_SR11	SilentIntergenicRegion	0	16.67	0.00	0.00	1.76	35.34	5.01	8.59	6.89	1.73	1.19	119.03	28.74	34.04	92.36	34.12	117.26	76.24	0.00	0.00	0.00	0.00	0.00	0.00
74	IG34_AR15	ActiveIntergenicRegion	0	8.75	0.00	0.00	0.00	6.24	3.18	0.71	0.00	0.00	0.00	7.09	8.95	5.00	9.85	2.32	6.74	1.98	0.00	0.00	0.00	0.00	0.00	0.00
75	IG34_SR10	SilentIntergenicRegion	0	13.05	0.00	0.00	0.98	15.03	1.42	7.37	3.08	0.00	0.00	28.84	22.41	32.03	26.70	5.89	14.61	11.25	0.00	0.00	0.00	0.00	0.00	0.00
76	IG34_AR14	ActiveIntergenicRegion	0	16.53	0.00	0.00	1.70	39.14	1.91	7.44	4.23	0.84	0.79	48.22	52.25	106.22	28.46	7.30	31.35	30.10	0.00	0.00	0.00	0.00	0.00	0.00
77	IG34_AR13	ActiveIntergenicRegion	0	16.74	0.00	0.00	1.12	22.62	1.00	1.32	3.93	2.47	1.15	53.77	68.88	97.64	33.52	15.83	50.53	27.91	0.00	0.00	0.00	0.00	0.00	0.00
78	IG34_AR12	ActiveIntergenicRegion	0	21.17	0.00	0.00	2.42	27.20	3.67	2.65	6.91	2.47	1.15	49.93	49.55	71.91	37.44	12.09	47.55	38.51	0.00	0.00	0.00	0.00	0.00	0.00
79	IG34_SR9	SilentIntergenicRegion	0	17.66	0.18	0.00	2.68	21.75	3.25	3.88	3.36	1.78	0.02	59.97	41.10	82.09	52.71	10.56	38.21	33.86	0.00	0.00	0.00	0.00	0.00	0.00
80	IG34_AR11	ActiveIntergenicRegion	0	9.36	0.78	0.00	1.73	13.47	1.78	7.36	5.52	3.43	0.54	134.37	39.53	86.85	80.77	24.48	175.85	88.11	0.00	0.00	0.00	0.00	0.00	0.00
81	IG34_SR8	SilentIntergenicRegion	0	7.66	0.00	0.00	0.68	7.92	0.79	2.89	3.43	0.87	0.10	51.61	31.88	56.41	28.41	4.56	32.77	29.75	0.00	0.00	0.00	0.00	0.00	0.00
82	IG34_AR10	ActiveIntergenicRegion	0	6.19	0.00	0.00	0.00	5.85	0.80	1.63	3.81	0.33	0.00	53.14	44.47	73.80	28.17	6.73	24.77	29.56	0.00	0.00	0.00	0.00	0.00	0.00
83	IG34_AR9	ActiveIntergenicRegion	0	5.56	0.00	0.00	0.00	3.57	0.00	1.32	2.74	2.47	0.00	40.11	32.29	63.51	38.23	6.53	29.72	21.32	0.00	0.00	0.00	0.00	0.00	0.00
84	IG34_SR7	SilentIntergenicRegion	0	5.31	0.03	0.00	0.07	4.63	0.35	2.98	1.18	0.34	0.00	28.79	22.92	27.94	22.86	3.92	21.36	19.95	0.00	0.16	0.00	0.07	0.11	0.00
85	IG34_AR8	ActiveIntergenicRegion	0	2.91	0.00	0.00	0.00	4.77	0.00	1.37	0.73	0.00	0.00	28.05	10.28	4.80	31.28	3.40	45.29	29.82	0.00	0.00	0.00	0.00	0.00	0.00
86	IG34_AR2	ActiveIntergenicRegion	0	2.11	0.89	1.20	0.53	2.58	2.25	0.55	5.29	3.20	3.05	9.22	12.34	1.76	3.30	3.58	8.63	2.31	0.97	0.00	0.61	0.68	0.71	0.56
87	IG34_SR1	SilentIntergenicRegion	0	1.16	0.00	0.92	0.32	1.42	0.97	0.35	4.58	1.19	1.53	8.44	5.93	0.52	4.23	3.18	7.77	2.10	0.63	1.18	0.15	0.52	0.38	0.75