Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM162A Gene 0 50.28 80.48 21.19 24.60 25.73 27.19 12.21 14.49 14.16 23.55 180.00 77.12 28.24 75.99 120.40 51.88 106.83 16.63 29.26 22.37 62.74 49.91 43.26 2 232125 Transcript 0 2.53 3.46 1.50 0.43 2.49 1.28 3.00 0.00 0.16 2.81 14.38 2.62 1.23 5.57 15.24 7.10 10.67 4.83 0.78 2.18 2.34 1.48 4.19 3 477892 Transcript 0 18.89 31.76 8.97 16.36 15.21 15.04 9.91 7.40 9.71 15.43 16.27 26.17 7.40 12.02 13.26 7.35 11.38 5.55 11.30 13.30 6.80 13.32 7.92 4 469967 Transcript 0 9.10 8.10 2.92 3.78 7.28 3.91 2.59 2.19 1.96 2.49 29.64 23.88 6.12 8.96 3.09 3.58 11.14 3.61 1.70 1.34 2.74 8.79 1.82 5 440333 Transcript 0 82.09 93.19 33.51 26.86 18.34 15.03 6.40 18.68 14.53 28.83 188.44 16.77 11.92 21.61 64.19 53.22 135.34 24.08 26.21 18.72 69.00 67.50 31.80 6 ER1a ExonRegion 0 6.05 6.68 0.00 0.39 5.73 3.93 3.97 0.00 0.00 0.00 4.42 0.00 0.00 1.62 20.72 4.67 3.30 1.06 0.00 1.22 7.87 1.19 6.29 7 ER1b ExonRegion 1 99.08 99.90 1.38 7.33 20.57 43.67 12.91 3.02 0.77 2.51 65.72 0.00 0.00 37.15 89.21 67.24 43.74 6.47 20.51 7.31 56.33 40.37 96.91 8 ER1c ExonRegion 1 501.76 767.79 45.02 51.34 147.01 205.09 62.04 30.46 32.48 43.25 770.00 9.43 11.52 255.94 601.91 387.41 679.00 73.20 149.81 79.59 315.46 190.53 384.53 9 E1a_E2a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.68 0.00 0.00 2.47 0.00 7.43 11.69 4.68 0.00 2.43 0.00 0.00 0.00 10 E1a_E3b KnownJunction 1 258.71 522.80 81.28 63.73 59.68 57.24 21.07 39.27 35.56 96.11 406.31 36.16 39.45 89.47 147.97 143.30 416.74 91.69 94.03 92.49 168.90 72.38 90.74 11 ER2a ExonRegion 0 4.09 3.85 2.33 1.31 4.21 1.18 2.06 0.00 0.63 6.23 25.94 10.47 4.92 13.25 9.08 8.19 15.25 5.21 3.11 1.84 1.50 4.71 2.88 12 E2a_E3b KnownJunction 0 0.00 3.29 1.83 0.00 0.00 0.00 5.96 0.00 0.00 3.33 24.48 0.00 0.00 4.94 31.15 8.12 12.44 8.37 0.00 3.26 0.00 0.00 7.60 13 ER3a ExonRegion 1 126.99 286.73 34.31 24.53 30.77 30.26 15.23 19.88 14.20 40.14 366.28 17.32 16.42 54.41 134.91 93.62 336.69 42.50 47.78 42.55 119.00 52.09 74.88 14 ER3b ExonRegion 1 71.98 126.17 83.59 82.53 43.73 26.03 11.21 59.83 51.24 89.72 1252.01 164.80 94.80 332.07 546.41 347.71 850.63 78.59 145.85 88.86 445.08 251.39 354.73 15 E3a_E4a KnownJunction 0 88.68 110.11 134.12 128.46 124.28 59.34 16.03 99.81 75.55 126.39 1050.21 259.43 214.60 708.82 1338.03 544.81 452.36 164.86 176.66 201.72 272.99 303.84 414.86 16 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER3c ExonRegion 0 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 0.00 2.03 2.90 2.23 4.13 0.00 3.19 0.00 2.75 1.04 4.40 18 ER4a ExonRegion 0 56.51 163.76 136.77 91.55 194.38 249.23 69.68 74.10 51.91 91.69 861.54 335.53 175.38 448.19 882.97 360.68 437.50 135.96 142.92 104.90 316.38 193.36 254.99 19 E4_Da NovelBoundary 0 75.87 329.28 141.80 103.38 205.43 393.18 119.81 64.77 42.19 69.73 855.53 498.01 282.29 470.42 621.05 225.75 379.34 59.03 108.43 76.06 356.33 238.20 133.85 20 E4a_E4b KnownJunction 0 0.00 0.00 54.26 49.44 0.00 0.00 0.00 28.51 23.78 24.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.67 0.00 0.00 0.00 0.00 0.00 21 E4b_E5a KnownJunction 0 241.01 615.48 114.45 119.53 73.85 169.50 70.35 74.34 42.10 101.62 1040.47 561.63 157.29 590.38 942.71 165.60 565.31 56.87 133.27 140.62 414.96 240.46 155.28 22 ER4b ExonRegion 0 65.19 291.21 124.74 95.13 149.31 304.78 85.79 57.73 43.72 69.96 849.70 464.98 221.37 464.17 659.74 180.11 384.22 66.52 103.21 72.77 350.83 222.10 124.51 23 ER4c ExonRegion 0 129.19 422.09 127.83 114.21 105.32 244.92 68.69 67.06 48.12 86.16 956.01 545.86 199.80 512.96 741.91 174.88 456.71 68.44 117.73 103.06 384.94 237.10 140.84 24 ER5a ExonRegion 0 343.79 746.62 123.14 115.75 50.32 57.20 27.35 76.03 59.47 104.90 1275.32 628.90 214.73 617.07 886.83 262.32 670.49 70.55 143.92 104.50 461.50 310.92 160.08 25 E5_Da KnownBoundary 0 281.38 402.03 95.06 63.50 57.72 20.84 8.97 67.73 39.50 84.19 850.79 368.07 158.76 348.58 566.79 126.80 365.78 41.16 94.69 59.44 297.27 184.74 73.75 26 E5a_E5b KnownJunction 1 174.55 261.07 68.27 39.49 32.60 10.85 8.79 43.46 18.81 62.35 484.12 37.51 37.50 45.38 108.04 77.50 258.53 23.88 36.24 36.56 212.39 120.20 35.85 27 E5_Db KnownBoundary 0 13.71 9.01 1.51 0.00 4.33 0.00 4.50 2.55 0.00 4.00 17.00 25.06 14.12 4.59 4.45 4.36 0.00 6.84 0.00 9.08 0.00 5.45 0.00 28 E5b_E6a KnownJunction 0 258.49 311.00 73.24 54.54 50.51 21.75 2.25 51.06 46.44 53.54 1122.55 376.32 94.80 360.88 673.71 128.60 506.03 25.20 81.70 82.90 369.00 165.02 100.13 29 ER5b ExonRegion 0 286.79 421.97 112.12 79.73 66.89 23.84 9.93 82.97 60.52 92.90 1162.64 432.95 218.09 470.99 645.53 169.41 514.94 48.04 124.23 79.79 410.99 236.48 91.04 30 ER5c ExonRegion 0 256.32 354.81 117.31 87.08 54.64 25.19 9.89 82.06 54.35 95.68 1215.69 412.89 150.08 398.25 634.76 148.14 533.70 53.78 91.70 85.11 420.21 200.13 91.96 31 ER5d ExonRegion 0 9.10 8.10 2.92 3.78 7.28 3.91 2.59 2.19 1.96 2.49 29.64 23.88 6.12 8.96 3.09 3.58 11.14 3.61 1.70 1.34 2.74 8.79 1.82 32 I5 Intron 0 11.34 10.05 4.75 4.14 9.90 4.22 2.50 2.43 2.08 2.84 16.19 15.96 6.56 7.96 3.77 3.03 6.23 2.01 0.60 2.57 4.41 5.03 3.21 33 I5_SR1 SilentIntronRegion 0 11.81 10.71 4.85 4.57 11.21 4.46 2.68 2.43 2.24 3.15 16.18 15.30 6.64 8.53 3.28 3.08 5.65 1.61 0.29 2.69 3.57 4.88 3.30 34 I5_AR1 ActiveIntronRegion 0 8.91 6.66 4.27 1.90 3.13 3.00 1.55 2.41 1.29 1.20 16.28 19.40 6.17 5.05 6.35 2.78 9.27 4.09 2.24 1.99 8.76 5.85 2.75 35 E6_Aa NovelBoundary 0 0.00 0.00 6.24 3.56 19.44 8.46 2.03 0.00 2.89 3.09 27.53 18.91 6.82 2.47 18.91 12.05 13.65 4.23 0.00 3.26 0.00 5.88 0.00 36 E6a_E6b KnownJunction 0 0.00 0.00 10.35 1.66 0.00 0.00 0.00 6.16 1.71 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 37 E6_Ab NovelBoundary 1 154.47 202.53 94.97 80.24 23.77 23.85 10.86 62.56 35.62 55.74 790.88 232.73 51.62 294.84 341.06 109.63 398.60 41.74 40.47 42.12 267.56 124.79 87.67 38 ER6a ExonRegion 1 224.03 305.51 120.65 89.32 37.87 24.54 8.05 76.32 57.67 93.08 1258.91 369.34 94.88 395.29 587.84 152.72 565.47 44.35 75.71 74.96 412.77 181.11 99.62 39 ER6b ExonRegion 0 226.89 265.99 122.54 85.86 38.00 28.24 9.27 73.29 57.56 89.00 1227.39 389.65 121.94 426.17 595.34 149.80 604.72 48.41 90.46 73.62 409.01 183.35 109.83 40 ER6c ExonRegion 0 221.19 183.71 91.14 85.24 71.57 50.23 14.61 57.64 48.91 80.31 971.62 535.21 188.14 474.28 689.92 212.43 502.60 63.68 126.74 72.43 317.01 317.62 131.72 41 E6_Db KnownBoundary 0 21.86 28.88 27.88 22.01 17.06 19.42 3.93 17.74 19.94 44.48 210.05 141.50 34.74 75.70 130.29 52.29 84.81 17.62 16.57 34.07 59.68 175.19 45.07 42 E6b_E6c KnownJunction 1 273.09 103.99 67.35 72.88 65.03 64.11 20.76 32.78 43.23 73.20 460.43 62.57 29.54 49.44 203.47 199.18 348.01 68.44 96.29 51.90 148.82 299.19 107.47 43 E6_Ac KnownBoundary 0 313.02 116.03 22.38 10.85 92.11 39.81 18.59 10.80 14.00 26.03 489.81 366.72 171.58 278.42 256.01 260.87 375.97 15.25 136.76 23.71 157.41 183.52 117.20 44 ER6d ExonRegion 0 229.29 125.40 65.76 70.87 103.46 63.57 26.92 43.21 44.46 77.22 847.90 688.39 237.63 454.75 764.96 282.35 454.42 73.91 124.23 71.63 234.33 389.62 134.11 45 ER6e ExonRegion 0 134.82 107.78 48.26 55.53 60.95 36.18 17.74 33.64 29.13 57.40 586.77 405.39 155.14 288.50 492.34 158.14 277.64 42.18 91.11 37.15 138.62 188.87 80.36 46 E6_Dc KnownBoundary 0 47.56 79.39 16.76 33.36 20.97 19.65 8.70 23.08 9.43 33.85 247.22 164.60 49.19 99.18 152.54 36.66 99.95 11.40 42.07 11.76 49.79 72.56 36.02 47 E6_Dd KnownBoundary 1 24.23 47.03 20.70 26.64 7.72 7.33 0.00 18.77 16.67 30.00 209.84 95.28 13.64 39.14 108.78 11.96 78.92 14.05 13.93 11.06 26.44 36.99 16.22 48 ER6f ExonRegion 0 34.74 77.99 27.32 39.76 20.78 12.19 5.30 27.15 16.20 41.02 319.72 168.85 34.21 90.47 182.10 31.82 120.39 18.80 35.23 13.14 58.20 72.68 32.48 49 ER6g ExonRegion 0 18.89 31.76 8.97 16.36 15.21 15.04 9.91 7.40 9.71 15.43 16.27 26.17 7.40 12.02 13.26 7.35 11.38 5.55 11.30 13.30 6.80 13.32 7.92