Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RAB7A Gene 0 760.45 538.86 404.34 379.30 589.79 490.47 353.82 453.61 374.83 660.51 846.45 755.06 749.78 844.40 761.83 793.33 675.31 602.43 679.92 507.51 845.12 1291.31 1158.10 2 265062 Transcript 0 652.97 269.83 225.40 221.81 386.67 260.20 169.12 233.70 168.10 315.21 257.55 283.97 170.71 199.88 242.17 171.12 172.13 89.37 284.75 162.15 208.88 561.08 321.51 3 464851 Transcript 0 0.00 0.68 0.41 0.45 0.00 0.61 0.88 0.58 0.82 0.38 0.00 4.33 1.56 0.54 0.97 0.99 1.10 2.46 0.00 0.00 0.73 1.39 0.00 4 482525 Transcript 0 0.00 2.50 2.57 13.85 0.00 0.00 1.94 1.81 5.76 1.50 4.42 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 491681 Transcript 0 31.72 17.51 15.80 12.04 19.87 3.68 24.87 14.26 7.38 20.36 1.55 8.35 7.75 3.11 10.72 11.81 7.14 8.83 8.21 13.26 5.56 5.91 8.55 6 464496 Transcript 0 4.69 4.85 2.22 6.70 5.33 0.03 4.18 6.13 2.92 6.49 1.88 1.33 0.04 1.87 4.74 4.95 7.76 8.70 11.68 8.26 7.01 4.15 14.01 7 490093 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 493186 Transcript 0 152.47 84.33 12.57 14.28 160.87 200.57 118.09 8.01 18.06 18.83 245.06 319.90 368.32 406.56 275.67 242.24 199.35 59.69 211.86 213.61 302.59 371.01 355.37 9 483906 Transcript 0 0.00 3.03 1.83 2.66 0.00 0.00 0.00 4.48 2.95 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 4.61 3.26 0.00 2.88 3.84 10 485280 Transcript 0 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 3.50 11 430113 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 15.30 5.18 1.00 0.74 4.99 13.25 8.37 1.37 0.39 9.70 21.88 0.59 4.90 10.11 12.79 16.35 18.83 1.18 3.84 7.25 23.79 7.06 18.02 13 E1_Ab KnownBoundary 0 14.37 3.35 1.48 0.00 0.00 21.07 6.49 1.97 1.33 3.89 12.21 0.00 0.00 4.47 27.94 8.37 26.65 0.00 0.00 8.44 11.37 2.94 11.10 14 E1_Ac KnownBoundary 1 1147.83 379.21 61.06 101.05 371.48 677.28 396.01 101.29 87.93 260.83 951.98 75.62 260.53 829.13 625.26 893.61 875.92 391.65 325.09 308.53 1056.58 818.63 970.75 15 ER1b ExonRegion 1 405.46 154.99 20.44 16.84 132.16 272.25 168.62 16.79 11.95 92.61 449.95 17.94 147.23 436.08 371.57 362.92 392.10 55.23 118.54 140.96 551.79 382.92 355.02 16 ER1c ExonRegion 1 276.84 185.62 119.11 80.58 94.04 231.24 172.77 113.75 147.27 291.42 559.28 128.96 212.88 338.74 270.13 505.80 539.06 353.85 321.36 162.62 827.54 439.43 980.84 17 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1a_E2c KnownJunction 1 30.75 74.07 197.83 127.76 36.08 50.31 33.30 297.42 263.39 543.34 1182.77 152.75 283.10 808.17 616.60 459.02 896.96 475.72 250.92 498.75 1528.06 589.01 486.06 19 ER1d ExonRegion 1 27.21 65.07 147.92 106.89 35.17 51.61 27.42 221.74 215.62 462.86 1115.56 129.27 289.44 712.52 506.89 441.15 899.73 432.90 232.53 431.00 1403.13 626.25 479.09 20 I1_AR16 ActiveIntronRegion 0 15.39 68.77 105.38 62.69 45.49 3.67 24.79 87.99 44.02 52.97 7.38 26.76 73.34 4.43 24.53 5.94 15.60 24.02 6.37 33.27 3.61 14.21 21.36 21 I1_AR17 ActiveIntronRegion 0 93.90 120.54 96.36 56.50 108.25 7.09 80.76 80.14 44.63 53.80 15.29 19.29 64.17 4.87 18.86 30.13 19.96 25.20 18.68 40.62 12.62 21.31 50.99 22 ER2a ExonRegion 0 4.69 4.85 2.22 6.70 5.33 0.03 4.18 6.13 2.92 6.49 1.88 1.33 0.04 1.87 4.74 4.95 7.76 8.70 11.68 8.26 7.01 4.15 14.01 23 E2_Ab KnownBoundary 0 0.00 0.00 1.33 5.16 0.00 0.00 0.00 5.96 6.11 4.35 2.00 6.00 0.00 0.00 0.00 0.00 0.00 5.84 0.00 8.37 2.78 0.00 0.00 24 E2_Ac KnownBoundary 0 0.00 14.87 0.00 4.66 0.00 0.00 1.90 0.00 1.45 0.00 0.00 0.00 0.00 0.00 5.69 4.19 3.55 2.16 4.42 2.88 5.00 2.33 0.00 25 ER2b ExonRegion 1 40.21 85.41 161.75 137.65 40.14 56.85 31.78 252.35 234.67 470.23 1173.27 160.19 304.85 808.81 580.25 517.15 930.85 493.35 277.13 497.87 1445.63 758.40 572.65 26 ER2c ExonRegion 0 76.16 151.20 293.70 265.90 96.95 114.43 54.00 385.19 357.96 649.74 1185.54 488.51 472.05 1402.32 957.66 1396.90 932.17 1248.00 819.22 758.26 1225.30 1589.31 1828.84 27 E2a_E3a KnownJunction 1 99.72 274.89 438.04 432.88 181.75 163.60 110.89 531.79 499.36 802.50 896.81 787.46 566.36 1375.54 1263.86 2326.74 763.53 2135.18 1333.78 877.71 943.22 2195.40 3177.64 28 ER3a ExonRegion 1 125.19 341.24 449.19 371.06 413.16 399.02 186.37 501.00 539.46 796.35 1353.69 745.45 859.20 1111.38 938.58 2544.43 1013.16 2005.02 1532.68 776.94 1289.28 1759.11 4442.71 29 E3_Da KnownBoundary 0 201.15 489.25 411.69 252.35 622.07 541.11 312.67 420.39 461.86 656.00 1714.43 845.53 822.51 989.06 941.47 786.03 1120.90 968.97 545.15 638.66 1520.90 1064.24 1277.12 30 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER3b ExonRegion 0 279.89 491.69 417.52 306.32 689.69 727.63 433.34 463.33 481.96 758.17 1715.54 844.11 763.48 1146.43 865.80 710.52 1097.40 928.13 569.31 669.89 1606.70 1199.16 1246.20 32 E3_Db KnownBoundary 0 491.49 513.99 306.88 264.37 836.84 953.43 610.86 354.63 308.16 588.22 1404.30 788.66 638.27 1219.21 896.60 485.43 885.09 518.33 483.50 657.96 1345.88 1038.21 839.89 33 E3b_E5c KnownJunction 0 152.47 84.33 12.57 14.28 160.87 200.57 118.09 8.01 18.06 18.83 245.06 319.90 368.32 406.56 275.67 242.24 199.35 59.69 211.86 213.61 302.59 371.01 355.37 34 ER3c ExonRegion 0 365.64 481.03 390.71 326.47 619.64 884.22 592.21 459.82 435.47 743.12 1475.39 676.05 656.32 1166.61 860.44 596.23 1040.08 579.80 441.90 727.08 1419.32 1109.57 815.94 35 E3_Dc KnownBoundary 0 21.11 15.33 13.51 14.55 30.90 0.00 22.74 18.85 11.23 16.33 2.68 6.00 6.49 2.47 5.81 29.14 8.32 11.81 0.00 24.48 7.97 8.14 3.50 36 E3c_E4a KnownJunction 0 367.77 561.61 427.72 371.31 587.86 1001.81 717.29 486.56 430.29 742.68 1498.38 687.97 816.67 1250.93 1020.21 745.79 1219.82 658.20 466.27 826.70 1519.66 1279.66 793.45 37 E3c_E5a KnownJunction 0 0.00 3.03 1.83 2.66 0.00 0.00 0.00 4.48 2.95 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 4.61 3.26 0.00 2.88 3.84 38 E3c_E6a KnownJunction 0 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 3.50 39 ER3d ExonRegion 0 31.72 17.51 15.80 12.04 19.87 3.68 24.87 14.26 7.38 20.36 1.55 8.35 7.75 3.11 10.72 11.81 7.14 8.83 8.21 13.26 5.56 5.91 8.55 40 ER4a ExonRegion 0 773.70 633.15 586.45 402.05 258.31 564.57 397.97 584.95 545.45 914.57 1519.16 1067.27 981.24 1372.90 1070.82 1256.49 1365.81 1044.03 822.52 864.04 1706.01 1838.33 1459.13 41 E4_Da KnownBoundary 0 2199.50 742.10 689.66 424.62 269.35 444.40 288.65 588.39 531.30 911.78 2149.97 1428.32 961.46 1661.20 1484.52 2347.08 1623.56 1489.17 1556.00 963.49 2044.21 2575.79 2626.45 42 E4a_E5a KnownJunction 0 0.00 2.50 2.57 13.85 0.00 0.00 1.94 1.81 5.76 1.50 4.42 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E4_Db KnownBoundary 0 445.49 240.42 135.63 98.22 77.42 157.64 89.69 154.11 123.12 245.92 517.03 382.62 400.14 685.80 428.09 432.54 379.34 246.73 354.93 379.09 562.05 614.11 497.07 44 E4b_E4b NovelJunction 0 0.00 0.00 218.27 186.42 0.00 0.00 0.00 213.67 213.77 388.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 305.01 0.00 0.00 0.00 0.00 0.00 45 E4b_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER4b ExonRegion 0 1364.26 601.55 691.06 494.62 243.18 369.65 220.54 675.69 610.67 1082.32 1811.65 1375.60 1061.03 1784.53 1354.22 1765.33 1362.00 1533.42 1220.61 975.45 1832.55 2215.58 2078.69 47 E4_Ab KnownBoundary 0 551.65 344.28 323.97 313.91 197.96 205.96 114.38 342.35 284.81 512.26 827.89 700.58 749.14 787.75 503.99 546.01 645.82 598.88 466.46 548.03 854.50 1086.96 814.02 48 ER4c ExonRegion 0 979.42 542.71 618.05 482.97 260.22 341.32 199.92 621.60 527.09 965.98 1489.54 1365.41 1274.52 1889.66 1239.56 1144.27 1181.31 1179.33 862.04 940.16 1644.52 1975.96 1507.60 49 ER4d ExonRegion 0 946.95 691.28 625.24 545.22 466.78 525.63 338.44 671.42 576.94 991.94 1526.74 1464.33 1411.92 1795.32 1406.05 1065.97 1330.45 1077.60 797.95 958.46 1796.02 1916.14 1542.15 50 E4c_E5a KnownJunction 0 878.30 962.39 739.77 618.10 635.91 782.05 706.74 781.93 640.36 1036.01 1341.02 1541.30 1379.29 1809.00 1643.49 1012.81 1164.37 1122.35 656.68 1017.05 1565.38 1808.41 1321.16 51 E5_Ab NovelBoundary 0 292.87 427.36 222.32 178.93 264.18 365.30 334.22 222.29 179.66 274.39 534.50 282.24 338.13 340.16 252.30 470.47 463.95 305.51 416.29 459.31 673.37 678.77 567.66 52 ER5a ExonRegion 0 701.51 892.74 669.19 560.60 615.12 788.13 662.72 698.30 570.21 974.36 1425.41 1378.69 1274.65 1661.11 1467.71 1113.56 1209.23 1075.80 787.14 997.87 1690.98 1900.63 1445.15 53 ER5b ExonRegion 0 622.45 999.48 663.15 570.83 771.74 1097.89 882.07 708.83 584.27 1040.94 1530.90 1573.01 1373.52 1721.11 1450.96 1310.29 1257.33 1270.35 906.12 1042.25 1858.91 1851.09 1743.89 54 E5_Da KnownBoundary 0 514.98 915.43 468.70 413.33 889.13 1198.34 971.40 467.83 342.82 749.88 1230.05 1684.60 1334.49 1483.20 1453.00 1187.04 1011.59 935.60 640.21 847.61 1580.88 1362.38 1652.29 55 E5_Db KnownBoundary 0 76.24 111.10 55.32 62.03 198.98 212.04 281.54 47.03 75.55 102.10 221.90 81.18 44.48 90.77 46.60 217.12 186.16 135.64 174.31 208.11 299.31 284.25 241.75 56 E5b_E5c NovelJunction 1 265.31 520.24 471.54 481.79 751.36 925.26 717.42 531.01 457.84 875.35 743.77 156.95 154.37 196.25 214.72 725.88 631.60 1117.87 652.82 722.01 1052.81 1221.79 1078.48 57 E5_Ac KnownBoundary 0 257.16 207.00 248.36 200.54 317.40 349.06 223.11 203.48 202.75 339.48 387.99 266.64 241.87 286.89 283.45 444.76 341.37 492.30 410.55 377.94 577.56 724.15 641.93 58 ER5c ExonRegion 0 433.40 809.55 592.86 556.74 988.81 1293.08 916.36 642.98 543.90 1027.05 1398.45 1581.63 1439.41 1717.14 1441.53 1279.23 1126.51 1401.77 876.99 1019.63 1826.77 1777.62 1795.62 59 ER5d ExonRegion 0 444.47 675.15 588.18 567.64 1003.41 1250.65 839.39 607.55 562.59 1009.85 1377.19 1385.43 1348.38 1699.64 1450.63 1304.76 1090.95 1375.65 966.76 1042.55 1830.18 1996.01 1772.26 60 ER5e ExonRegion 0 429.77 519.68 624.25 536.77 756.48 830.50 510.12 644.94 624.62 1025.66 1361.60 1551.58 2095.82 1767.62 1394.46 1428.64 1292.27 1351.44 994.67 1073.22 1781.80 1935.79 1991.99 61 E5c_E6a KnownJunction 1 479.57 498.46 698.05 551.81 511.63 542.30 341.16 733.79 682.83 1085.22 1490.54 2115.09 3140.54 1860.45 1501.70 1858.06 1486.21 1524.37 1026.66 1032.45 1860.49 1942.76 2635.42 62 ER5f ExonRegion 0 0.00 2.03 1.23 1.36 0.00 1.83 2.65 1.73 2.47 1.15 0.00 12.99 4.69 1.62 2.90 2.97 3.30 7.39 0.00 0.00 2.20 4.17 0.00 63 ER6a ExonRegion 0 621.28 478.01 819.72 698.36 448.54 505.45 310.27 1054.31 860.90 1497.51 2132.56 1947.60 2411.42 2402.09 2208.24 2328.92 1850.94 1817.13 1989.46 1306.31 2276.36 3198.24 3339.53 64 E6_Da KnownBoundary 0 1187.32 826.63 1000.44 754.12 648.30 730.03 398.39 1198.58 1048.11 1793.12 3116.89 1470.03 1899.88 1700.34 1881.21 1695.03 2854.60 1832.20 1434.49 1583.36 2810.31 2212.24 2543.74 65 ER6b ExonRegion 0 1009.45 851.52 798.02 605.80 938.74 960.74 688.65 928.22 870.45 1474.88 2300.69 1633.07 2055.85 1856.76 1595.51 1704.05 1972.08 1767.30 1463.71 1125.06 2222.30 2287.55 2327.41 66 E6_Db KnownBoundary 0 2339.75 1626.95 1048.72 866.09 2132.26 1994.31 1613.35 1392.66 1142.41 1882.16 2776.55 2561.93 3361.79 2313.98 1978.37 2674.94 2311.45 2285.45 2274.89 1386.81 2844.17 3619.94 3886.92 67 ER6c ExonRegion 0 954.80 762.93 412.44 346.74 975.11 810.75 639.60 576.05 462.78 773.25 1474.28 1391.44 2098.31 1547.77 1497.33 2042.75 1378.85 1151.49 1732.06 891.51 1539.00 2598.27 2799.13 68 E6_Dc KnownBoundary 1 686.42 765.98 566.63 526.54 696.35 540.71 369.11 618.78 530.84 795.92 1194.30 1390.65 1410.30 1612.23 1806.17 2975.54 855.63 1414.60 2126.37 789.44 1356.32 4176.68 3557.25 69 ER6d ExonRegion 0 1156.79 867.89 509.81 517.43 875.52 598.15 491.82 534.60 442.80 763.47 877.98 881.94 933.89 1095.48 1018.90 1002.56 638.01 638.81 851.65 551.78 768.10 1720.07 1345.00 70 E6_Dd KnownBoundary 1 3594.71 1481.32 498.80 647.60 1213.50 666.38 840.59 622.93 454.51 828.07 474.91 1052.89 525.94 542.06 688.05 364.52 324.26 149.19 420.25 477.08 311.61 1342.79 467.53 71 ER6e ExonRegion 0 1283.37 1063.44 532.57 649.38 1321.06 888.43 645.68 676.34 475.19 900.10 634.58 909.29 449.27 464.02 526.13 341.60 394.77 151.39 440.03 459.99 389.35 1322.84 585.21 72 E6_De KnownBoundary 0 810.81 1006.47 627.27 701.34 1611.72 701.36 551.33 735.55 534.37 944.90 639.95 938.11 567.33 334.04 542.31 346.75 283.31 261.78 406.79 397.88 195.40 715.45 742.06 73 ER6f ExonRegion 0 1290.64 534.48 449.80 442.87 768.36 507.14 329.87 466.02 335.81 620.72 493.22 567.36 336.52 389.65 471.54 325.90 325.43 177.56 565.66 317.05 393.97 1115.10 625.00 74 IG29_AR1 ActiveIntergenicRegion 0 6.67 7.57 1.05 2.91 5.37 3.15 8.35 2.21 1.58 5.39 2.22 4.09 5.61 1.53 3.18 3.41 3.78 2.90 2.74 7.32 0.63 0.00 13.46 75 IG29_AR2 ActiveIntergenicRegion 0 5.14 4.98 0.94 3.87 4.63 1.05 3.47 4.89 1.71 4.54 1.19 4.77 9.33 0.42 6.62 14.39 6.49 1.33 20.54 10.35 1.26 7.33 20.62 76 IG29_AR3 ActiveIntergenicRegion 0 2.21 3.27 2.76 1.40 3.88 0.72 4.34 10.54 0.47 4.26 2.15 3.66 3.04 0.41 2.78 1.55 9.11 3.41 14.89 23.34 0.47 3.52 6.74 77 IG29_AR4 ActiveIntergenicRegion 0 1.92 1.09 5.04 3.61 5.23 4.82 7.54 7.40 3.19 7.17 0.58 3.93 8.83 0.00 2.43 5.94 4.68 1.76 10.45 14.30 3.95 2.42 10.24 78 IG29_AR5 ActiveIntergenicRegion 0 4.23 4.07 6.13 4.32 2.68 3.36 8.39 11.52 4.94 9.18 0.00 4.33 10.16 0.00 0.00 12.38 6.60 1.85 11.68 16.67 0.00 6.25 11.75 79 IG29_AR6 ActiveIntergenicRegion 0 16.70 19.88 6.13 6.81 6.84 5.91 11.92 13.64 4.94 9.18 0.00 0.00 15.63 0.00 0.97 30.05 8.80 2.67 41.76 31.44 0.00 11.11 31.00 80 IG29_SR2 SilentIntergenicRegion 0 10.20 10.21 6.39 5.08 7.24 1.78 8.17 5.32 2.62 4.45 1.78 4.84 5.29 1.07 4.61 7.20 7.22 5.75 10.26 8.57 3.09 2.50 11.17