Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM86D Gene 0 4.11 5.69 13.94 10.97 5.34 8.54 5.16 10.15 9.61 7.76 4.46 5.66 6.85 6.13 8.47 7.57 6.41 12.68 11.65 12.66 23.71 9.55 15.29 2 477247 Transcript 0 0.00 0.00 2.70 0.00 1.95 7.54 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.63 0.00 0.00 0.00 0.99 4.03 0.00 3 459803 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 497543 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.79 0.00 1.42 0.00 0.00 2.89 0.00 0.00 3.99 6.61 2.08 2.57 5 478666 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 489609 Transcript 0 10.66 12.61 16.18 18.23 11.73 13.72 9.37 15.98 10.74 8.64 5.13 5.31 8.84 9.57 10.49 19.19 6.14 9.99 7.98 15.44 27.07 21.79 21.12 7 491583 Transcript 0 6.71 10.94 23.80 18.80 8.80 12.24 8.07 18.58 16.05 11.93 8.59 11.16 16.04 8.92 16.23 14.57 9.74 23.03 20.87 23.36 40.03 15.68 25.91 8 484945 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 5.86 22.62 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 1.89 0.00 0.00 0.00 0.00 6.22 0.00 10 E1_Ab NovelBoundary 0 19.86 8.62 70.81 15.82 3.99 40.37 23.27 8.13 22.57 25.87 16.79 0.00 0.00 0.00 0.00 42.38 32.45 32.08 30.87 30.30 37.87 21.00 22.96 11 E1_Ad NovelBoundary 0 0.00 3.22 5.03 0.00 0.00 0.00 0.00 0.00 0.00 2.61 0.00 0.00 0.00 2.41 0.00 8.29 0.00 12.15 4.42 3.13 24.34 0.00 16.56 12 E1_Da NovelBoundary 0 0.00 0.00 5.38 0.00 0.00 2.78 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 6.96 0.00 3.26 9.20 6.18 4.18 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 2.68 20.17 1.32 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 2.97 3.30 0.00 0.00 0.00 0.00 4.17 0.00 15 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 2.68 10.17 0.36 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 1.35 3.30 0.00 0.00 0.00 0.00 2.27 0.00 16 ER1d ExonRegion 0 0.00 0.64 0.00 0.00 0.33 0.80 0.17 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.41 0.00 0.00 0.00 0.83 0.52 0.00 17 ER1e ExonRegion 0 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.35 3.09 0.50 0.19 0.00 0.00 0.88 0.00 2.62 0.00 0.85 4.14 0.77 0.00 0.00 6.93 18 E1_Ae KnownBoundary 0 3.48 0.00 7.57 0.00 3.74 0.00 2.16 0.00 8.71 6.34 2.68 0.00 6.82 0.00 0.00 3.33 8.51 9.45 4.24 0.00 62.70 0.00 8.28 19 E1_Af KnownBoundary 0 0.00 0.00 1.80 8.19 4.33 5.11 0.00 7.56 17.59 14.16 19.32 0.00 0.00 7.24 0.00 0.00 23.38 12.64 43.39 18.22 92.67 8.51 42.00 20 ER1f ExonRegion 0 0.00 0.00 0.61 1.59 1.34 0.00 0.00 5.19 8.65 2.39 1.93 0.00 0.00 3.65 0.00 1.73 0.28 6.47 10.09 2.13 2.20 2.26 26.67 21 ER1g ExonRegion 0 0.00 0.00 9.02 6.22 2.68 0.09 0.00 9.17 15.04 6.29 3.12 0.00 0.00 7.37 0.00 4.95 7.96 9.43 11.52 2.40 17.29 14.69 25.75 22 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER1h ExonRegion 0 0.00 2.15 4.71 2.17 0.79 3.76 1.32 1.68 5.32 4.94 3.18 0.00 0.00 5.74 6.61 0.92 2.17 4.01 4.89 1.16 5.31 4.42 7.65 25 E1_Dc NovelBoundary 0 13.48 22.04 134.00 66.59 27.42 21.69 35.37 74.26 65.65 53.48 22.48 12.60 21.91 7.42 5.07 12.73 27.30 30.97 84.43 21.09 84.94 34.78 57.96 26 E1c_E2a KnownJunction 0 0.00 3.03 5.06 1.86 0.00 2.33 2.08 1.68 0.00 7.52 4.84 0.00 0.00 7.12 12.24 3.42 4.02 0.00 4.80 0.00 11.74 2.88 0.00 27 ER2a ExonRegion 0 0.00 1.48 13.36 6.62 0.00 0.29 2.35 11.66 4.22 7.56 7.70 0.00 2.68 9.07 2.76 3.73 10.69 0.79 5.41 6.01 31.52 8.70 9.00 28 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E3a_E3b KnownJunction 0 0.00 0.00 8.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 5.88 0.00 30 E3_Ab NovelBoundary 0 6.96 9.34 23.95 9.32 20.46 5.56 6.71 11.71 8.88 12.06 9.95 0.00 12.66 19.01 9.27 20.85 21.97 1.87 9.60 15.40 43.31 23.21 19.29 31 ER3a ExonRegion 0 0.00 0.00 2.74 2.21 0.00 0.00 0.25 5.35 5.12 4.53 1.29 0.00 3.57 3.56 2.21 0.00 4.40 0.00 2.43 0.00 9.02 0.50 6.29 32 ER3b ExonRegion 0 0.00 0.00 6.54 4.54 0.00 0.00 1.32 7.78 8.65 10.13 0.64 0.00 2.35 3.25 0.00 0.00 2.75 1.54 0.00 0.00 8.81 0.35 2.94 33 ER3c ExonRegion 0 3.67 9.04 25.73 14.02 18.11 59.37 17.73 17.78 19.01 20.99 21.23 3.94 4.52 18.01 10.98 20.49 23.46 14.39 20.19 10.33 72.96 33.93 38.86 34 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E3b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E3b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E3b_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 Ix Intron 0 3.54 2.66 8.10 3.10 1.75 2.80 4.53 4.12 2.68 3.23 1.83 2.48 3.21 1.77 3.74 3.68 2.64 4.61 5.10 3.87 10.58 4.55 9.19 39 Ix_SR1 SilentIntronRegion 0 3.55 2.67 8.13 3.11 1.76 2.80 4.54 4.13 2.69 3.24 1.83 2.49 3.22 1.78 3.75 3.69 2.65 4.63 5.11 3.88 10.61 4.56 9.21 40 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER5a ExonRegion 0 0.00 0.00 0.69 0.86 0.00 0.00 0.00 0.99 0.95 0.23 4.96 1.91 0.00 0.00 0.00 0.40 0.22 0.00 0.00 0.30 3.12 7.03 0.59 43 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 Ix Intron 0 1.32 2.53 2.27 2.53 1.66 1.14 0.82 0.00 0.00 4.25 2.40 0.00 0.00 0.00 8.17 0.00 2.05 4.57 5.94 5.29 2.74 2.59 10.96 45 Ix_SR1 SilentIntronRegion 0 1.32 2.59 2.33 2.59 1.71 1.17 0.84 0.00 0.00 4.32 2.46 0.00 0.00 0.00 8.38 0.00 2.10 4.69 6.09 5.43 2.81 2.66 11.20 46 ER6a ExonRegion 0 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.20 0.00 0.00 0.26 0.85 0.00 0.00 0.00 0.00 0.00 0.23 1.93 0.00 47 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 Ix Intron 0 4.29 3.74 15.16 7.46 2.71 1.51 2.43 4.08 5.13 6.93 2.82 1.68 4.02 2.75 3.37 6.21 3.35 6.17 4.84 6.60 11.87 5.94 9.86 49 Ix_SR1 SilentIntronRegion 0 3.78 4.22 16.82 7.80 2.72 1.66 2.70 4.30 5.77 6.79 2.78 1.67 4.27 3.06 3.42 6.48 3.84 6.48 5.41 7.53 13.37 6.21 9.56 50 Ix_AR1 ActiveIntronRegion 0 7.92 0.44 3.88 5.25 2.70 0.53 0.60 2.64 0.79 8.07 3.16 1.80 2.37 0.68 3.10 4.50 0.00 4.13 1.01 0.27 1.64 4.19 12.12 51 E7_Aa NovelBoundary 0 10.37 6.18 10.26 3.40 0.00 0.00 0.00 7.23 1.77 5.48 5.37 0.00 0.00 4.59 8.90 21.02 4.30 0.00 0.00 3.26 8.83 7.96 20.23 52 ER7a ExonRegion 0 2.21 4.60 23.07 11.44 6.17 17.22 7.48 3.83 4.78 6.98 7.23 3.01 0.00 9.04 11.35 1.16 10.76 8.68 14.68 0.83 22.80 13.50 21.71 53 ER7b ExonRegion 0 0.48 1.84 20.32 7.10 2.26 8.50 3.98 12.93 12.06 16.26 10.74 0.00 0.98 7.22 6.15 5.84 12.85 8.22 8.32 5.45 41.66 15.13 16.48 54 E7a_E8a KnownJunction 0 0.00 3.29 2.96 0.00 0.00 0.00 0.00 4.64 1.50 0.00 4.95 0.00 5.84 0.00 4.45 4.36 0.00 0.00 0.00 0.00 5.44 5.94 4.35 55 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.01 0.00 2.87 2.47 0.00 0.00 4.71 0.00 15.72 0.00 0.00 0.00 0.00 6.12 16.78 8.54 56 E7a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 Ix_AR1 ActiveIntronRegion 0 3.34 2.60 0.00 0.00 2.98 2.06 0.90 0.00 0.83 0.77 1.62 0.00 0.00 0.97 4.74 1.34 1.43 2.70 1.41 2.40 11.31 1.88 2.65 58 E8_Aa NovelBoundary 0 9.56 28.35 157.24 197.74 19.69 46.73 37.63 95.62 94.30 94.18 45.49 13.05 18.34 21.54 30.41 55.88 25.90 202.09 121.23 127.00 149.81 48.80 66.84 59 ER8a ExonRegion 0 13.41 18.59 44.63 37.59 17.61 24.48 16.13 32.53 30.60 23.86 12.24 22.33 26.23 17.84 28.02 24.79 19.49 46.05 41.74 46.71 74.62 25.41 47.46 60 E8_Da NovelBoundary 0 57.71 20.39 21.44 12.92 47.62 20.39 26.63 6.61 9.09 7.74 6.84 6.15 20.29 9.12 15.20 37.85 11.87 3.90 7.81 10.80 5.50 5.02 11.18 61 Ix Intron 0 16.44 17.99 14.97 4.38 10.77 1.85 8.67 6.30 2.65 3.57 5.42 4.54 11.09 4.93 10.35 11.54 7.60 8.59 9.85 3.83 24.41 14.98 28.52 62 Ix_SR1 SilentIntronRegion 0 16.49 18.04 15.02 4.40 10.81 1.85 8.69 6.32 2.66 3.58 5.44 4.56 11.12 4.94 10.38 11.58 7.62 8.62 9.88 3.83 24.47 15.03 28.60 63 E9_Aa NovelBoundary 0 90.39 77.35 90.30 132.72 53.31 49.46 48.31 97.55 66.58 42.93 9.90 0.00 26.95 7.36 18.05 20.76 13.09 94.39 41.60 36.11 62.21 36.80 97.31 64 ER9a ExonRegion 0 21.32 25.22 32.37 36.47 20.23 27.44 18.75 29.95 21.48 14.41 7.78 10.61 17.67 14.44 20.98 22.65 12.28 19.99 15.97 30.88 48.02 26.81 33.70 65 E9_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER9b ExonRegion 0 10.94 1.95 24.79 18.52 3.99 1.82 2.70 17.75 17.69 11.95 3.31 0.39 1.97 9.27 6.64 9.96 3.76 20.07 9.33 13.34 29.44 16.86 26.02 67 E9_Da KnownBoundary 0 59.94 99.46 297.12 121.06 132.60 63.15 61.17 150.00 87.53 121.68 128.14 51.92 49.02 54.39 78.25 100.83 136.23 252.45 218.55 178.65 208.31 144.14 76.74 68 ER9c ExonRegion 0 1.29 3.94 4.26 0.65 2.25 3.72 5.28 3.02 1.41 0.62 0.41 0.75 2.61 2.86 6.59 4.21 0.69 2.42 1.69 3.16 5.28 4.16 6.18 69 E9_Db KnownBoundary 0 9.19 20.19 3.40 1.83 4.33 0.00 0.00 0.00 1.74 2.98 2.53 0.00 0.00 2.06 0.00 0.00 4.68 8.66 4.71 0.00 2.29 2.94 7.68 70 ER9d ExonRegion 0 0.99 2.00 0.00 0.70 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 71 E9_Dc KnownBoundary 0 228.34 163.79 253.27 249.92 106.54 160.36 84.00 192.84 140.97 149.81 76.02 20.71 38.63 13.01 52.29 34.86 58.81 393.93 214.31 231.00 242.29 82.05 102.09 72 ER9e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.20 0.00 0.36 0.00 0.06 0.00 0.00 0.34 0.00 0.19 0.31 0.42 0.34 0.13 73 ER9f ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 1.62 0.00 0.00 3.30 0.00 0.00 4.26 6.61 2.08 2.94 74 ER9g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.79 0.00 1.42 0.00 0.00 2.89 0.00 0.00 3.99 6.61 2.08 2.57 75 IG47_AR5 ActiveIntergenicRegion 0 3.35 11.95 14.70 10.65 9.03 5.45 7.10 7.00 7.72 8.91 2.77 2.83 3.35 3.41 5.81 7.68 5.48 14.33 14.29 18.20 23.25 14.00 22.28 76 IG47_AR4 ActiveIntergenicRegion 0 2.97 4.59 9.46 3.88 6.34 2.21 4.16 4.70 2.84 5.01 4.06 1.50 2.71 3.59 5.73 5.72 1.39 11.16 7.05 8.00 19.61 9.47 12.56 77 IG47_SR3 SilentIntergenicRegion 0 1.08 2.92 3.21 1.69 2.87 1.70 2.71 1.56 2.17 2.24 2.16 0.78 1.11 2.12 4.29 3.27 2.85 5.02 3.78 5.73 17.03 5.05 11.66 78 IG47_AR3 ActiveIntergenicRegion 0 1.79 5.19 5.68 3.35 4.06 3.73 2.88 5.04 3.60 5.95 3.08 1.29 1.24 2.99 6.94 4.16 4.08 6.19 7.23 9.72 26.65 12.32 19.23