Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-319J24.1 Gene 0 1.79 12.43 12.48 4.91 3.24 9.98 2.56 2.80 3.79 4.65 1.29 0.86 5.86 0.16 0.00 2.52 2.40 8.67 1.93 4.38 0.00 2.77 0.18 2 461931 Transcript 0 1.16 3.23 3.98 0.45 1.39 3.86 0.09 0.00 0.79 0.77 0.00 0.04 0.68 0.00 0.00 0.00 0.00 0.07 0.00 0.45 0.00 0.00 0.00 3 488132 Transcript 0 0.00 1.42 2.92 5.31 0.00 5.93 3.71 6.99 0.41 3.36 1.50 0.00 3.84 0.00 0.00 4.32 0.00 2.28 0.00 0.50 0.00 1.45 0.00 4 475816 Transcript 0 0.00 0.00 13.54 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 7.69 0.00 6.51 0.00 0.00 0.00 0.00 0.00 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 6 ER1b ExonRegion 0 1.54 7.52 5.89 0.74 2.92 11.36 2.22 1.06 2.01 3.11 0.00 0.00 0.00 0.00 0.00 0.00 1.20 9.36 3.48 5.41 0.00 0.76 0.00 7 E1_Ac KnownBoundary 0 7.04 82.22 9.08 5.29 3.57 33.28 72.47 7.06 1.39 2.61 0.00 0.00 0.00 0.00 0.00 37.60 12.53 7.92 34.45 56.18 0.00 5.76 4.01 8 ER1c ExonRegion 0 0.00 10.71 13.17 1.91 0.00 12.79 0.39 4.57 2.80 2.88 0.00 0.00 1.66 0.00 0.00 4.93 0.00 9.06 0.12 2.96 0.00 0.00 0.00 9 E1_Da NovelBoundary 0 0.00 26.90 0.00 6.03 0.00 13.46 11.53 0.00 1.68 1.32 5.05 0.00 0.00 0.00 0.00 0.00 4.68 2.36 0.00 26.14 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 39.99 25.58 5.66 0.00 24.82 1.90 7.97 7.64 7.49 0.00 0.00 6.82 0.00 0.00 8.46 0.00 18.57 0.00 6.46 0.00 0.00 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 13.54 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 7.69 0.00 6.51 0.00 0.00 0.00 0.00 0.00 12 E2_Aa NovelBoundary 0 0.00 27.82 0.00 0.00 8.66 7.27 10.78 4.35 5.01 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.29 0.00 8.44 0.00 0.00 0.00 13 ER2a ExonRegion 0 1.86 17.04 18.76 5.67 2.29 13.72 1.63 3.93 5.43 6.69 0.51 0.00 5.31 0.70 0.00 1.58 0.00 10.71 0.00 5.25 0.00 1.93 0.00 14 E2a_E3a KnownJunction 0 3.48 2.57 11.18 0.00 4.16 8.18 0.00 0.00 1.36 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E2b_E3a KnownJunction 0 0.00 0.00 4.85 9.12 0.00 10.45 6.49 12.32 0.00 4.11 2.58 0.00 6.82 0.00 0.00 7.01 0.00 3.15 0.00 0.00 0.00 2.27 0.00 16 ER2b ExonRegion 0 0.00 3.25 3.92 6.81 0.00 7.34 3.97 8.64 1.24 5.96 1.93 0.00 4.69 0.00 0.00 5.94 0.00 3.70 0.00 0.43 0.00 2.08 0.00 17 ER3a ExonRegion 0 2.79 9.82 20.86 8.99 2.51 9.68 0.66 2.82 2.82 8.62 2.69 0.00 8.17 0.53 0.00 7.24 6.58 18.41 2.04 6.78 0.00 2.59 0.00 18 E3a_E4a KnownJunction 0 0.00 0.00 28.77 8.66 0.00 7.44 0.00 0.00 0.00 7.71 0.00 0.00 6.82 0.00 0.00 0.00 0.00 14.59 4.52 0.00 0.00 2.88 0.00 19 ER4a ExonRegion 0 3.86 14.97 20.24 9.77 5.15 16.47 5.77 5.58 6.23 7.27 3.31 3.68 12.53 0.00 0.00 4.15 5.77 11.45 4.43 4.77 0.00 6.04 0.00 20 E4_Da KnownBoundary 0 0.00 16.44 1.83 2.96 0.00 11.13 1.94 0.00 3.47 3.01 0.00 0.00 6.33 0.00 0.00 0.00 0.00 1.62 0.00 3.26 0.00 0.00 0.00 21 E4a_E5a KnownJunction 0 3.11 2.76 8.16 0.00 4.33 13.06 2.12 9.69 1.79 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 7.53 0.00 0.00 9.98 0.00 22 ER4b ExonRegion 0 0.00 7.13 0.76 1.34 0.00 3.41 0.26 0.00 1.01 0.95 0.00 0.12 2.05 0.00 0.00 0.00 0.00 0.21 0.00 0.81 0.00 0.00 0.00 23 E4_Db NovelBoundary 0 3.26 16.90 4.91 8.69 3.74 9.77 8.35 0.00 4.31 2.42 0.00 0.00 0.00 4.94 0.00 0.00 0.00 2.36 0.00 5.88 0.00 0.00 0.00 24 I4 Intron 0 0.69 16.23 7.82 6.06 5.91 2.38 2.58 1.67 6.45 1.66 0.00 0.93 2.11 0.17 0.00 0.00 0.00 1.97 0.41 4.56 0.00 0.00 0.38 25 I4_SR1 SilentIntronRegion 0 1.52 16.81 18.21 8.58 6.37 2.84 1.66 2.63 8.21 2.21 0.00 1.04 1.85 0.00 0.00 0.00 0.00 1.48 0.00 5.09 0.00 0.00 0.00 26 I4_AR2 ActiveIntronRegion 0 0.74 18.06 7.98 5.93 5.59 2.27 3.08 1.74 6.72 1.59 0.00 0.41 2.07 0.00 0.00 0.00 0.00 2.21 0.74 4.78 0.00 0.00 0.68 27 E5_Aa NovelBoundary 0 0.00 32.63 4.11 6.13 0.00 0.00 1.63 1.93 3.36 3.09 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5a ExonRegion 0 1.15 17.40 6.47 3.71 6.12 3.06 4.14 1.42 4.79 1.99 1.18 1.09 7.41 0.00 0.00 0.00 1.01 0.89 1.32 3.27 0.00 4.90 0.90 29 ER5b ExonRegion 0 0.00 1.02 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00