Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MINA Gene 0 37.18 41.12 21.76 19.96 29.29 35.01 5.50 23.96 16.17 14.92 64.80 88.53 77.71 80.49 47.69 59.95 50.35 13.74 12.40 32.60 39.20 29.41 20.71 2 394198 Transcript 1 27.71 23.62 1.12 0.00 7.20 41.47 3.19 7.52 5.37 3.43 42.40 0.00 0.20 66.33 24.40 63.51 30.46 4.26 0.09 13.96 33.73 9.40 29.76 3 330299 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.14 1.57 8.09 11.01 5.30 8.99 1.45 0.72 1.32 4.01 0.00 1.74 2.58 4 360258 Transcript 0 20.67 20.39 7.84 4.23 3.40 15.62 0.00 9.73 6.54 2.90 43.75 30.91 33.60 38.91 45.74 37.26 34.78 5.89 16.85 6.33 16.74 18.92 27.83 5 333396 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 442492 Transcript 0 0.64 0.71 0.75 0.06 0.23 0.00 0.00 0.00 0.54 0.05 1.60 0.38 0.20 2.26 0.00 4.39 0.14 0.32 0.00 0.37 2.59 0.00 0.51 7 ER1a ExonRegion 1 12.82 15.21 0.52 0.00 2.60 20.30 2.24 3.75 1.79 1.86 24.26 0.00 0.40 25.53 13.93 28.67 16.32 1.35 0.18 6.83 17.41 7.22 8.98 8 E1a_E2a KnownJunction 1 42.60 32.03 1.71 0.00 11.80 62.63 4.15 11.30 8.94 5.00 60.54 0.00 0.00 107.13 34.86 98.35 44.60 7.17 0.00 21.09 50.04 11.57 50.53 9 ER1b ExonRegion 0 0.74 0.22 1.06 0.90 0.00 1.40 0.00 1.28 0.48 1.31 6.21 2.00 2.65 10.72 2.37 8.58 7.05 3.27 0.00 3.64 5.45 1.08 0.68 10 E1b_E2a KnownJunction 0 9.78 0.00 4.85 0.00 0.00 0.00 0.00 6.41 1.56 0.00 29.17 0.00 6.33 40.61 10.63 19.40 14.21 6.63 0.00 17.96 5.50 7.84 0.00 11 ER2a ExonRegion 0 19.48 31.60 24.14 14.95 24.80 41.96 4.23 36.15 34.26 23.86 162.01 145.82 95.56 205.47 74.47 150.91 129.92 34.77 22.50 54.14 110.57 53.11 42.18 12 E2a_E3a KnownJunction 0 30.89 47.16 64.46 36.69 25.81 47.98 3.93 39.18 45.95 23.07 242.32 286.29 179.70 260.41 108.04 219.52 176.53 55.22 27.58 79.90 109.78 67.91 66.84 13 ER3a ExonRegion 0 29.10 44.82 52.49 29.00 31.13 49.53 6.77 52.50 39.19 31.53 212.81 237.25 213.36 277.63 124.22 209.91 190.24 66.10 17.09 86.21 169.01 69.24 48.43 14 E3a_E4a KnownJunction 0 31.86 42.56 49.17 33.66 30.22 42.87 8.61 55.41 47.37 36.99 199.42 281.19 222.87 351.70 117.93 178.50 124.17 60.85 30.21 79.32 139.62 55.78 87.33 15 I3 Intron 0 4.66 7.52 2.82 2.09 2.13 1.37 0.56 3.26 1.72 1.60 0.91 11.62 16.14 2.75 3.42 5.85 5.57 1.08 2.24 4.19 1.65 0.88 2.34 16 I3_AR1 ActiveIntronRegion 1 4.75 8.98 2.64 1.31 0.86 1.75 0.74 3.82 1.96 1.23 0.36 16.81 25.86 2.35 2.17 5.23 2.46 0.00 3.81 2.86 0.46 1.51 1.58 17 I3_AR2 ActiveIntronRegion 0 1.20 5.11 0.82 2.60 0.00 1.04 0.00 2.11 0.45 0.00 2.19 27.23 8.03 5.07 4.77 6.74 3.74 0.00 0.99 5.74 3.57 0.00 0.16 18 ER4a ExonRegion 0 28.19 45.78 35.34 25.67 36.53 56.01 6.30 37.13 31.25 32.49 149.96 195.60 133.18 259.20 122.91 173.49 140.35 50.20 29.85 76.13 136.95 54.22 61.65 19 E4_Da NovelBoundary 0 10.45 3.03 1.48 10.06 12.65 0.00 0.00 0.00 1.79 4.57 0.00 0.00 6.82 4.94 4.45 4.36 4.49 6.09 0.00 6.20 8.34 0.00 13.06 20 E4a_E5a KnownJunction 0 46.45 46.11 26.88 30.37 57.13 99.94 8.61 57.34 49.36 32.85 210.32 113.74 99.51 223.50 139.44 203.37 192.52 50.82 8.94 86.35 139.80 55.54 59.75 21 I4_AR1 ActiveIntronRegion 0 1.74 7.10 0.86 3.26 4.24 1.59 1.94 1.28 1.76 2.05 4.48 7.42 11.57 8.16 1.79 5.78 8.39 3.96 2.76 6.23 8.57 3.54 3.43 22 E5_Aa NovelBoundary 0 3.41 12.10 1.45 1.50 22.58 0.00 1.90 4.72 0.00 2.93 5.05 0.00 20.13 2.24 0.00 3.67 4.11 9.04 0.00 8.12 9.14 5.57 8.71 23 ER5a ExonRegion 0 35.88 66.85 35.21 30.46 49.45 73.83 12.28 50.21 30.55 32.77 173.46 115.19 171.86 263.09 143.64 191.07 162.00 59.50 28.12 83.06 150.70 54.93 59.16 24 E5_Da NovelBoundary 0 11.34 7.83 4.67 3.30 10.53 0.00 2.16 4.44 4.28 0.00 25.59 12.30 19.64 43.50 14.09 22.64 22.53 5.43 3.95 16.75 13.34 7.84 15.28 25 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.11 0.00 0.00 6.95 0.00 3.42 0.00 0.00 0.00 3.26 0.00 0.00 0.00 26 E5a_E8a KnownJunction 0 49.79 61.63 30.81 29.37 79.54 94.15 6.05 41.07 27.57 31.48 200.00 96.48 79.05 279.95 121.39 164.83 144.83 36.19 38.59 66.47 133.62 62.15 87.92 27 I5 Intron 0 6.75 7.53 3.44 5.64 6.24 6.10 1.95 5.65 5.05 2.58 18.62 20.66 16.65 28.14 7.25 25.67 18.90 6.30 2.84 9.55 14.80 6.07 9.26 28 I5_SR1 SilentIntronRegion 1 5.87 7.94 1.11 2.70 2.73 3.75 1.79 1.20 0.92 3.32 13.84 8.29 5.26 22.40 8.43 23.94 15.39 6.34 1.96 10.90 14.19 3.31 6.70 29 I5_AR1 ActiveIntronRegion 0 5.10 6.63 3.61 4.43 5.57 5.91 5.51 4.01 2.11 2.90 20.25 7.13 23.07 31.70 13.75 28.75 23.35 7.82 1.75 8.60 16.04 4.17 1.85 30 I5_AR2 ActiveIntronRegion 0 1.66 6.50 2.74 2.95 5.26 8.75 2.39 3.93 1.30 2.85 12.04 30.67 26.45 25.12 6.55 18.10 14.91 3.79 1.80 4.53 8.55 3.86 4.53 31 I5_SR2 SilentIntronRegion 0 3.80 8.83 1.81 2.78 2.55 3.66 1.99 6.57 4.93 2.05 18.59 20.89 13.15 25.28 7.46 15.81 12.63 3.87 3.26 5.98 7.50 3.99 3.22 32 I5_AR3 ActiveIntronRegion 1 9.57 7.64 3.96 8.58 9.49 9.33 0.89 9.27 8.14 2.59 22.33 24.65 18.15 32.44 6.21 34.20 27.00 8.73 3.59 13.41 20.37 10.35 15.44 33 I5_SR3 SilentIntronRegion 1 9.17 3.73 11.03 8.18 5.35 1.83 0.00 5.19 2.47 4.59 27.70 33.19 0.00 33.29 6.29 26.75 38.51 3.70 0.00 13.48 20.20 10.42 26.43 34 I5_AR4 ActiveIntronRegion 1 5.39 6.29 11.03 10.16 6.32 3.67 0.60 3.46 2.47 3.13 26.71 24.01 2.13 41.78 6.59 31.61 27.01 5.71 1.74 13.15 23.64 9.66 28.83 35 I5_SR4 SilentIntronRegion 0 13.14 7.19 6.71 8.38 7.65 4.56 2.32 3.57 6.97 3.23 20.59 16.63 16.87 29.97 6.85 32.82 19.21 6.75 2.74 13.40 19.60 4.82 14.00 36 I5_AR5 ActiveIntronRegion 0 5.54 6.90 3.06 5.85 7.03 0.00 1.27 0.97 4.34 1.21 14.27 17.80 8.20 21.37 4.56 18.61 6.32 5.56 3.04 6.10 14.54 4.48 9.96 37 E6_Aa NovelBoundary 0 28.30 27.96 0.00 7.26 15.53 28.68 0.00 13.84 12.33 1.67 29.01 11.85 13.15 26.61 4.45 35.03 29.17 4.19 0.00 11.95 25.02 8.27 4.35 38 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.17 3.14 16.17 15.07 10.60 14.55 2.90 1.43 2.64 4.77 0.00 3.48 5.16 39 E6_Da NovelBoundary 0 10.30 5.92 0.00 3.90 23.51 2.84 6.18 5.01 8.77 9.72 20.90 21.91 53.73 36.14 0.00 32.38 13.93 8.08 8.47 12.53 45.65 22.17 4.27 40 ER7a ExonRegion 0 0.64 0.71 0.75 0.06 0.23 0.00 0.00 0.00 0.54 0.05 1.60 0.38 0.20 2.26 0.00 4.39 0.14 0.32 0.00 0.37 2.59 0.00 0.51 41 I7 Intron 0 13.15 14.70 2.97 6.43 10.00 8.12 2.10 5.12 4.93 4.51 15.70 34.72 41.30 24.16 6.25 21.00 16.09 2.84 4.40 8.90 8.94 7.95 7.04 42 I7_SR1 SilentIntronRegion 0 13.17 14.72 2.97 6.44 10.01 8.13 2.10 5.13 4.94 4.52 15.72 34.77 41.37 24.19 6.26 21.03 16.11 2.84 4.40 8.91 8.96 7.97 7.05 43 E8_Aa NovelBoundary 0 33.93 13.81 3.43 1.40 25.55 5.22 1.68 6.94 4.54 1.61 16.48 12.90 33.44 28.96 14.22 29.48 16.83 4.19 9.04 14.89 10.75 16.78 12.98 44 ER8a ExonRegion 0 47.63 70.56 42.58 28.33 58.32 80.28 11.98 36.03 39.18 27.49 180.34 146.91 151.81 235.42 109.54 168.40 126.49 28.79 25.51 81.51 147.56 65.76 65.32 45 E8a_E9a KnownJunction 0 40.08 63.67 59.40 34.66 22.75 62.29 18.55 41.85 32.75 14.13 101.87 80.13 61.36 137.74 134.99 139.88 97.62 28.11 17.04 50.94 94.70 27.00 42.34 46 E8a_E9b KnownJunction 0 20.67 20.39 7.84 4.23 3.40 15.62 0.00 9.73 6.54 2.90 43.75 30.91 33.60 38.91 45.74 37.26 34.78 5.89 16.85 6.33 16.74 18.92 27.83 47 ER9a ExonRegion 0 38.63 55.42 53.92 31.35 27.43 49.05 14.23 42.35 29.03 17.78 119.36 70.35 57.45 176.22 126.20 146.38 108.10 31.41 23.09 51.06 99.72 50.53 46.99 48 ER9b ExonRegion 0 61.52 82.74 65.28 33.27 63.33 70.42 12.21 51.44 32.68 27.84 181.34 120.27 142.68 253.31 134.91 192.89 147.72 40.55 30.39 78.77 143.45 70.54 66.44 49 E9a_E10a KnownJunction 0 115.28 92.81 80.42 39.66 69.44 108.63 14.66 53.07 27.89 28.23 154.72 175.86 216.87 213.32 166.88 200.03 139.22 46.43 54.59 100.29 140.54 61.78 51.05 50 E10_Aa NovelBoundary 0 2.96 9.80 3.31 3.13 0.00 5.79 0.00 4.52 1.16 0.00 9.63 19.51 34.58 16.19 4.45 11.96 0.00 1.66 0.00 3.26 3.15 3.12 8.02 51 ER10a ExonRegion 0 78.33 70.06 77.24 45.10 60.19 100.90 10.46 52.96 29.86 36.53 214.55 198.96 171.21 238.53 165.57 218.67 169.79 46.32 45.70 102.89 118.31 78.85 64.54 52 E10a_E11a KnownJunction 0 107.13 89.52 53.64 32.30 60.36 127.77 10.16 61.69 43.60 34.79 256.33 168.96 137.65 198.84 64.53 204.22 159.42 32.08 30.68 127.32 140.42 86.28 57.71 53 I10_AR2 ActiveIntronRegion 0 6.56 3.50 8.04 3.84 17.38 1.69 0.76 6.84 2.83 1.57 9.12 4.52 19.02 27.76 8.15 9.68 8.68 3.30 1.83 2.51 3.59 3.93 0.16 54 E11_Aa NovelBoundary 0 34.52 6.18 0.00 2.00 16.04 5.28 0.00 3.74 5.09 2.85 2.58 5.85 0.00 12.18 0.00 4.27 9.26 0.00 0.00 2.81 3.15 7.59 0.00 55 ER11a ExonRegion 0 85.72 96.84 51.07 41.80 69.66 69.15 17.03 53.47 40.98 43.68 259.93 260.30 217.30 248.71 170.46 212.24 176.05 30.61 48.38 112.39 113.07 89.94 74.13 56 E11_Da NovelBoundary 0 17.86 2.76 11.89 2.06 24.11 5.11 1.77 5.96 3.33 1.56 32.11 12.45 13.64 14.01 22.25 7.69 9.44 0.00 9.60 0.00 5.68 12.12 3.67 57 E11a_E12a KnownJunction 0 81.27 163.52 70.02 52.07 57.39 70.75 16.52 53.19 43.34 43.17 247.85 285.39 285.21 259.52 159.22 242.16 222.81 30.05 62.50 107.76 76.73 105.08 47.63 58 I11 Intron 0 16.84 4.79 4.71 1.82 12.60 3.49 1.48 11.26 2.89 3.26 8.67 11.88 15.55 13.59 13.45 3.66 5.92 0.00 1.79 4.77 2.96 6.31 1.32 59 I11_AR1 ActiveIntronRegion 0 16.92 4.81 4.73 1.83 12.65 3.51 1.49 11.31 2.90 3.27 8.70 11.93 15.62 13.65 13.51 3.68 5.95 0.00 1.79 4.79 2.98 6.33 1.32 60 E12_Aa NovelBoundary 0 12.97 0.00 3.25 1.93 29.71 0.00 0.00 7.76 1.77 1.13 0.00 0.00 6.82 2.47 4.45 8.46 3.74 1.82 0.00 6.39 3.15 4.84 0.00 61 ER12a ExonRegion 0 42.61 43.20 18.30 21.10 29.78 31.66 5.38 20.90 12.27 12.13 32.65 75.97 67.76 35.95 31.37 25.72 22.75 5.40 8.91 22.37 12.09 22.21 11.57