Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C3orf49 Gene 0 3.54 6.47 2.82 4.93 11.50 4.39 6.78 6.00 4.17 5.16 0.57 6.81 7.48 2.43 2.58 4.97 3.68 3.20 4.39 7.89 1.08 2.67 3.47 2 295896 Transcript 0 1.76 3.66 1.67 2.58 6.32 1.38 2.95 2.96 1.41 2.93 0.16 3.42 3.85 0.89 1.51 2.10 1.32 1.02 0.71 2.17 0.31 0.94 1.50 3 491896 Transcript 0 5.03 5.43 2.43 2.49 10.75 6.92 8.19 6.11 4.29 4.21 1.51 5.82 12.64 3.91 6.42 6.30 7.71 4.15 9.37 12.01 2.62 4.27 7.15 4 ER1a ExonRegion 0 3.67 8.39 1.98 3.91 17.42 1.19 1.44 7.87 1.61 9.99 0.00 2.49 7.72 0.00 1.07 5.19 0.00 1.79 0.69 1.39 0.00 1.36 1.27 5 E1_Da NovelBoundary 0 10.67 2.63 3.67 4.83 0.00 2.27 8.35 4.81 1.74 30.09 0.00 0.00 7.30 0.00 10.63 21.79 0.00 0.00 4.80 0.00 0.00 3.12 3.67 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E2_Aa NovelBoundary 0 6.15 5.92 8.07 9.66 3.82 9.88 12.81 4.89 11.55 11.15 0.00 0.00 6.82 2.47 4.45 4.36 12.90 0.00 3.58 9.08 0.00 3.12 0.00 8 ER2a ExonRegion 0 3.87 6.91 6.61 5.77 17.80 2.98 8.36 8.02 7.58 8.28 0.79 4.83 1.70 4.41 2.67 6.16 0.00 3.48 1.29 8.04 2.18 2.12 2.98 9 E2_Ab KnownBoundary 0 0.00 16.05 3.34 12.89 14.77 0.00 7.55 7.31 3.10 7.52 0.00 6.00 0.00 12.36 0.00 3.25 0.00 7.05 0.00 8.69 2.41 0.00 4.10 10 ER2b ExonRegion 0 0.00 4.92 1.60 7.68 8.42 0.00 1.90 3.11 3.60 2.83 0.00 0.69 5.17 2.61 0.00 6.07 0.00 4.39 2.35 10.05 0.22 0.00 0.00 11 E2_Da NovelBoundary 0 0.00 22.04 3.78 11.02 15.87 4.66 3.40 6.04 8.16 13.48 2.68 0.00 6.82 2.47 8.90 4.36 4.30 8.17 9.60 14.76 5.75 6.18 7.60 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 Ix_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 1.40 18.69 6.41 2.77 0.00 1.27 0.00 0.00 0.00 0.00 2.80 1.67 2.08 2.31 1.29 0.00 1.46 0.00 5.79 0.00 14 E3_Aa NovelBoundary 0 3.63 16.05 0.00 8.02 45.76 0.00 5.74 8.21 7.47 3.63 0.00 25.06 13.64 0.00 9.64 4.36 4.77 13.02 13.46 5.69 8.90 3.12 0.00 15 ER3a ExonRegion 0 1.73 4.15 0.01 3.39 6.55 8.20 3.30 3.13 3.76 2.09 0.79 5.71 1.73 1.83 0.00 2.43 0.08 1.98 3.90 10.47 0.90 1.68 1.22 16 E3_Da NovelBoundary 0 10.30 12.04 0.00 3.43 15.20 8.52 21.73 7.76 3.47 4.00 0.00 12.60 0.00 4.71 0.00 0.00 0.00 1.78 0.00 12.02 10.93 0.00 4.35 17 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 I3_AR1 ActiveIntronRegion 0 3.75 9.74 1.34 9.02 13.69 5.87 10.62 15.79 4.39 6.75 1.06 4.53 5.82 1.96 3.34 5.93 1.51 5.40 2.92 10.81 0.00 3.68 3.23 19 I3_AR2 ActiveIntronRegion 0 2.12 9.93 4.25 9.70 10.70 7.34 11.84 3.46 2.47 0.00 0.00 4.84 0.00 1.53 2.22 5.94 6.60 9.02 14.80 24.03 0.00 0.00 7.60 20 I3_AR3 ActiveIntronRegion 0 0.00 4.07 3.68 9.54 12.71 7.34 11.81 5.62 1.24 1.53 0.00 4.33 0.00 0.00 4.84 6.93 1.93 7.39 9.82 22.34 0.92 0.00 2.94 21 I3_AR4 ActiveIntronRegion 0 0.00 2.71 3.68 9.54 9.22 7.34 11.18 5.57 0.96 2.55 0.00 4.33 0.00 1.62 5.48 6.93 0.00 5.54 13.10 15.84 2.20 0.00 0.65 22 I3_SR2 SilentIntronRegion 0 0.75 6.64 1.71 8.41 9.61 1.78 7.77 4.11 9.31 4.36 2.26 4.87 18.76 1.39 1.43 2.06 3.28 3.14 7.12 9.26 0.78 1.95 0.67 23 E4_Aa NovelBoundary 0 0.00 3.09 2.78 11.19 11.46 2.56 4.06 9.12 7.61 9.03 5.37 6.30 19.48 9.65 14.83 8.37 4.77 7.17 9.60 17.26 3.15 0.00 8.28 24 ER4a ExonRegion 0 0.95 10.10 0.81 4.53 7.28 7.42 11.78 4.61 5.74 1.53 0.00 11.09 5.35 4.23 1.83 3.88 5.82 9.27 4.28 11.37 1.02 7.48 3.92 25 E4_Da NovelBoundary 0 0.00 0.00 3.31 11.42 11.97 10.85 17.58 8.87 8.54 4.89 2.32 17.71 19.97 0.00 0.00 0.00 0.00 3.77 4.71 2.43 0.00 0.00 11.18 26 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E5_Aa NovelBoundary 0 0.00 13.75 4.29 23.01 0.00 7.84 9.63 0.00 3.85 4.59 4.79 0.00 19.48 2.47 4.45 8.37 8.13 0.00 22.97 9.59 5.13 6.06 3.93 28 ER5a ExonRegion 0 4.44 2.65 3.48 5.43 13.51 7.72 6.64 8.61 9.16 7.58 0.60 4.54 9.07 1.50 2.67 7.53 3.06 2.80 11.66 13.82 1.24 1.59 4.08 29 E5_Da KnownBoundary 0 3.11 2.96 1.27 7.13 7.39 2.90 11.26 6.86 7.87 5.61 0.00 0.00 6.33 2.41 5.56 16.32 0.00 5.10 20.80 12.21 0.00 3.12 4.35 30 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5b ExonRegion 0 5.03 5.43 2.43 2.49 10.75 6.92 8.19 6.11 4.29 4.21 1.51 5.82 12.64 3.91 6.42 6.30 7.71 4.15 9.37 12.01 2.62 4.27 7.15 32 E5_Db NovelBoundary 0 5638.55 5139.28 5853.37 6312.62 4676.57 3294.64 5456.26 6605.12 6362.90 5462.32 1762.24 1080.65 1235.47 875.81 2149.71 4348.09 4012.99 8533.18 3557.00 5560.86 2744.09 1727.52 4371.96 33 ER6a ExonRegion 0 0.00 1.56 0.00 0.00 2.05 3.12 0.00 0.00 0.00 0.00 0.00 0.22 6.57 0.00 5.22 0.00 0.00 0.00 0.00 1.81 0.00 0.00 2.35 34 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER7a ExonRegion 0 4.74 8.77 3.07 8.35 7.00 2.40 10.88 4.81 0.69 2.23 0.36 16.41 10.98 1.86 1.59 3.33 9.25 1.89 2.98 3.97 0.00 3.11 3.87