Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CGGBP1 Gene 0 11.79 15.63 6.27 6.88 16.23 18.33 14.43 11.75 12.28 17.47 19.64 27.33 30.73 27.58 10.13 28.02 25.60 23.62 8.86 21.25 16.96 29.73 27.81 2 462901 Transcript 0 0.54 4.89 0.34 1.75 7.29 15.02 6.54 3.68 3.94 10.55 2.99 3.00 0.00 7.44 0.74 13.23 14.16 29.92 9.63 30.54 3.62 2.19 0.21 3 467332 Transcript 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 4.45 3.33 4.77 19.61 0.00 15.15 0.00 0.00 0.00 4 482016 Transcript 0 13.73 21.42 8.68 11.58 23.46 15.60 17.58 13.53 12.45 18.37 16.74 50.32 44.91 31.10 8.04 34.21 32.97 7.32 9.29 14.42 17.17 45.72 19.91 5 309534 Transcript 0 27.11 19.98 8.16 8.66 18.73 8.71 15.40 18.10 3.52 15.25 1.14 17.38 9.93 2.10 6.74 0.66 5.10 1.47 0.00 9.76 1.46 1.01 0.00 6 474441 Transcript 0 50.07 47.45 5.88 10.32 82.58 39.57 41.44 24.50 37.47 38.49 43.27 129.85 144.95 60.99 8.39 41.09 36.57 10.20 5.13 21.45 10.65 67.82 30.31 7 398392 Transcript 0 0.38 1.43 0.29 0.42 1.14 0.80 0.98 0.63 0.42 1.04 1.00 1.99 1.90 1.55 0.46 1.96 1.81 0.63 0.15 0.75 1.21 2.14 1.04 8 ER1a ExonRegion 0 1.07 6.62 0.67 0.48 11.19 30.04 10.91 3.41 0.97 4.96 5.99 0.00 0.00 2.74 1.47 3.22 11.95 10.44 10.23 18.64 1.06 1.26 0.41 9 E1_Ab KnownBoundary 0 9.63 20.39 1.83 3.90 34.04 65.64 48.27 12.65 7.44 17.30 44.85 0.00 0.00 12.07 20.15 24.69 36.37 35.53 28.33 46.79 3.03 2.45 7.60 10 ER1b ExonRegion 0 2.38 8.45 3.52 4.18 9.57 14.56 10.10 5.47 5.01 12.14 10.48 2.91 0.00 4.15 4.74 11.63 19.33 24.59 5.51 25.70 1.86 2.26 5.48 11 E1_Da NovelBoundary 0 0.00 2.63 1.66 1.86 7.98 0.00 6.27 0.00 4.37 1.21 10.21 0.00 0.00 3.00 4.45 12.82 7.57 0.00 4.61 11.57 0.00 0.00 4.35 12 E1a_E2a KnownJunction 0 0.00 0.00 3.19 2.06 0.00 0.00 0.00 1.81 7.29 8.68 7.48 6.30 0.00 0.00 5.19 4.36 12.72 9.16 0.00 24.67 3.15 0.00 0.00 13 E2_Aa NovelBoundary 0 3.56 0.00 1.45 1.23 8.66 5.34 15.72 0.00 9.40 9.16 7.79 5.40 0.00 0.00 0.00 4.02 0.00 0.00 3.95 12.08 0.00 2.57 3.41 14 ER2a ExonRegion 0 0.99 0.63 4.87 4.79 9.67 5.15 9.23 10.47 7.22 11.27 6.19 11.32 7.66 9.15 4.63 17.89 22.17 37.51 15.49 50.93 1.80 7.30 2.91 15 E2_Da NovelBoundary 0 10.22 83.54 20.58 23.74 39.47 41.23 77.77 22.59 29.25 49.69 80.76 173.61 124.02 71.93 15.20 31.79 66.29 34.12 16.57 60.27 62.40 60.07 35.08 16 E2a_E4a KnownJunction 0 0.00 3.16 0.00 3.03 3.40 0.00 2.16 3.94 6.92 16.14 0.00 6.00 0.00 12.13 0.00 23.24 16.36 49.41 9.04 42.44 6.18 3.12 0.00 17 E2a_E5c KnownJunction 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 4.45 3.33 4.77 19.61 0.00 15.15 0.00 0.00 0.00 18 Ix Intron 0 8.71 14.81 7.04 11.49 9.40 2.08 12.39 9.27 6.27 13.58 5.63 27.78 18.73 4.95 5.44 9.55 8.42 2.70 4.37 12.81 1.56 4.37 3.02 19 Ix_AR1 ActiveIntronRegion 0 4.10 20.37 6.41 13.29 11.16 2.65 11.98 7.45 6.88 15.86 4.39 35.95 28.44 5.76 5.49 7.87 2.59 2.41 2.45 13.22 0.65 4.60 1.22 20 Ix_SR1 SilentIntronRegion 0 10.04 13.23 7.22 10.98 8.91 1.92 12.52 9.80 6.10 12.94 5.99 25.47 15.96 4.72 5.43 10.05 10.10 2.79 4.92 12.71 1.82 4.31 3.54 21 Ix_AR2 ActiveIntronRegion 0 11.68 15.98 9.89 16.81 13.39 0.37 10.00 17.64 8.09 13.08 1.19 6.27 19.46 0.14 8.06 9.11 5.06 4.14 5.86 11.09 0.00 1.70 1.80 22 Ix_SR1 SilentIntronRegion 0 2.12 7.09 5.78 4.26 8.88 1.06 2.24 5.48 4.03 2.85 2.04 26.71 18.12 0.00 7.09 5.17 1.58 0.73 0.00 6.91 0.00 1.11 0.00 23 Ix Intron 0 7.72 9.40 8.88 12.52 18.66 1.64 12.24 7.73 5.67 6.24 2.04 17.84 16.46 3.49 5.69 3.86 5.35 2.61 2.84 9.83 0.18 2.37 2.86 24 Ix_AR2 ActiveIntronRegion 0 7.28 11.86 10.65 14.88 12.41 1.10 13.07 6.93 8.53 4.35 2.31 23.50 19.27 2.21 5.59 3.11 5.92 2.62 4.29 9.86 0.33 2.80 2.20 25 Ix_AR1 ActiveIntronRegion 0 8.30 6.53 6.84 9.78 26.24 2.29 11.33 8.73 2.30 8.53 1.72 11.22 13.22 5.02 5.84 4.77 4.71 2.63 1.14 9.86 0.00 1.86 3.67 26 Ix Intron 0 13.45 18.59 12.34 16.20 15.05 3.02 15.93 9.82 6.62 17.79 3.92 21.49 17.60 6.28 8.67 15.19 11.16 7.31 8.27 16.17 1.67 3.66 4.92 27 Ix_AR1 ActiveIntronRegion 0 9.34 14.96 5.19 8.96 9.71 0.72 11.42 9.61 5.78 12.07 1.33 24.38 16.15 4.38 5.52 7.29 4.21 0.99 3.44 9.18 0.22 3.07 0.86 28 Ix_SR1 SilentIntronRegion 0 15.04 20.00 15.09 18.98 17.11 3.91 17.67 9.92 6.95 20.00 4.91 20.43 18.18 7.01 9.88 18.22 13.82 9.73 10.12 18.85 2.22 3.90 6.48 29 Ix_SR4 SilentIntronRegion 0 1.39 6.53 2.04 7.02 5.90 1.39 10.24 2.56 1.91 5.09 2.33 21.71 16.27 2.61 2.32 8.16 5.52 4.57 5.82 15.22 1.45 0.53 1.79 30 Ix_SR3 SilentIntronRegion 0 13.65 8.41 5.51 10.70 18.23 1.67 13.05 2.20 1.97 4.40 2.29 15.62 12.80 1.97 5.29 7.27 4.88 3.16 3.20 7.55 0.09 0.58 1.39 31 Ix_AR2 ActiveIntronRegion 0 8.12 10.45 7.91 16.58 15.46 2.07 16.01 4.40 2.71 5.52 0.76 12.51 9.79 2.29 6.76 7.09 8.64 7.12 2.42 11.61 1.06 1.01 0.94 32 Ix_SR1 SilentIntronRegion 0 0.65 20.41 7.35 19.13 18.11 0.00 10.54 4.79 3.04 4.81 1.93 34.97 10.28 0.00 5.69 5.26 8.25 1.56 1.72 13.34 0.00 0.00 0.00 33 E3_Aa NovelBoundary 0 0.00 3.35 0.00 0.00 3.99 28.79 0.00 0.00 0.00 0.00 5.05 0.00 6.82 2.30 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 7.43 34 E3_Ab NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 9.82 0.00 0.00 3.18 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.75 8.40 0.00 3.50 35 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.68 36 ER3b ExonRegion 0 1.56 4.46 0.45 0.21 1.45 5.50 6.27 0.32 0.74 1.78 5.07 1.30 5.19 13.17 34.87 14.17 5.19 2.37 12.71 1.22 4.81 39.59 24.63 37 E3_Ac KnownBoundary 0 16.74 35.32 8.57 6.13 14.86 55.59 14.93 9.04 11.26 15.82 33.80 23.26 50.32 71.99 94.69 98.86 76.67 19.90 69.37 5.62 26.63 174.21 97.48 38 ER3c ExonRegion 0 16.79 23.98 11.12 8.83 27.35 55.18 36.44 18.04 32.06 58.69 66.11 48.12 61.91 69.82 41.73 50.30 115.99 63.53 18.08 61.57 92.98 48.56 59.18 39 E3_Da NovelBoundary 0 0.00 0.00 4.49 1.63 0.00 0.00 5.83 4.68 9.95 15.10 22.85 18.01 0.00 24.43 8.90 10.68 48.53 15.42 4.14 8.63 20.39 5.76 0.00 40 E3a_E4a KnownJunction 0 33.71 41.44 46.60 40.12 32.17 65.76 50.61 82.52 105.00 182.04 206.68 80.28 84.90 137.21 61.19 93.05 249.46 346.26 47.91 240.52 192.07 94.48 124.97 41 I3 Intron 0 8.42 8.28 2.54 3.38 7.93 13.24 7.97 8.82 8.00 9.65 22.36 13.81 16.93 41.12 10.58 31.09 34.22 9.86 5.01 10.63 23.04 27.78 24.19 42 I3_AR1 ActiveIntronRegion 0 8.45 8.31 2.54 3.40 7.95 13.29 7.99 8.85 8.03 9.68 22.44 13.86 16.99 41.26 10.62 31.20 34.34 9.90 5.03 10.67 23.12 27.88 24.28 43 E4_Aa NovelBoundary 0 59.86 15.19 28.44 17.41 32.68 61.39 29.50 29.57 48.78 36.02 86.97 74.72 103.73 116.49 28.56 96.47 78.73 43.40 9.04 47.43 75.55 73.91 78.79 44 ER4a ExonRegion 0 88.95 136.68 65.46 90.97 174.46 230.62 156.40 123.88 160.75 233.87 338.88 312.95 360.93 458.03 164.17 538.40 422.45 423.90 172.44 350.99 303.77 463.69 590.65 45 E4_Da KnownBoundary 0 68.53 69.13 14.46 2.93 19.10 33.79 29.24 24.69 31.02 35.14 46.38 180.21 89.12 54.21 4.45 49.65 32.35 3.98 0.00 14.32 21.87 82.79 19.12 46 E4a_E5b KnownJunction 0 18.08 33.09 10.73 14.55 39.90 27.09 26.76 19.96 13.54 26.97 27.38 69.32 59.25 49.91 19.66 58.28 57.50 12.56 0.00 24.03 25.95 45.31 31.50 47 E4a_E5c KnownJunction 0 57.49 211.54 89.50 110.97 204.07 290.46 205.67 117.80 159.00 207.16 284.18 345.86 471.56 401.91 129.18 284.37 391.40 334.94 114.92 388.87 315.99 437.08 201.37 48 ER4b ExonRegion 0 50.07 47.45 5.88 10.32 82.58 39.57 41.44 24.50 37.47 38.49 43.27 129.85 144.95 60.99 8.39 41.09 36.57 10.20 5.13 21.45 10.65 67.82 30.31 49 E4_Db NovelBoundary 0 39.27 28.22 6.71 18.11 143.38 46.51 93.67 6.90 33.07 28.90 20.11 123.64 141.71 38.79 28.56 15.72 26.46 5.60 4.42 27.23 0.00 64.97 20.32 50 I4 Intron 0 32.61 17.65 9.70 8.99 45.49 23.38 26.49 11.86 20.86 19.67 24.99 93.58 130.65 29.86 8.64 16.32 16.37 6.53 5.08 18.09 6.24 39.85 10.40 51 I4_AR1 ActiveIntronRegion 0 32.83 17.77 9.77 9.05 45.80 23.54 26.68 11.94 21.01 19.81 25.16 94.23 131.50 30.07 8.70 16.43 16.48 6.58 5.11 18.21 6.29 40.13 10.46 52 E5_Aa NovelBoundary 0 28.30 24.07 7.33 4.13 57.89 31.00 34.84 7.64 8.97 11.63 22.80 146.30 95.29 21.54 13.35 36.49 25.81 4.23 0.00 9.59 0.00 99.08 28.00 53 E5_Ab NovelBoundary 0 14.52 13.35 1.83 9.72 47.11 25.72 13.38 12.36 17.27 24.20 23.80 39.16 42.04 40.44 0.00 17.17 9.35 0.00 0.00 9.59 0.00 46.54 0.00 54 ER5a ExonRegion 0 0.71 2.60 0.34 0.76 2.08 1.32 1.25 1.15 0.69 1.47 1.72 3.37 3.39 2.62 0.81 3.47 2.93 0.92 0.18 1.18 1.96 3.47 1.79 55 ER5b ExonRegion 0 8.15 14.70 8.61 10.43 20.72 14.91 15.43 22.61 15.60 23.73 25.01 48.18 33.94 33.11 4.31 43.99 38.56 8.71 8.29 14.56 25.64 70.88 33.35 56 E5_Da KnownBoundary 0 0.00 0.00 0.00 0.00 4.07 0.00 0.00 0.00 0.00 0.00 2.68 17.26 0.00 0.00 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 57 E5a_E5c KnownJunction 0 23.12 31.18 15.32 20.18 30.48 19.70 25.97 20.62 22.68 27.86 22.85 81.63 75.48 43.38 4.45 44.35 41.42 9.41 27.86 17.90 25.58 91.85 26.55 58 ER5c ExonRegion 0 0.06 0.27 0.23 0.09 0.20 0.28 0.71 0.11 0.15 0.62 0.28 0.61 0.41 0.49 0.12 0.45 0.68 0.33 0.13 0.31 0.47 0.81 0.29 59 E5_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 1.36 1.67 0.00 0.00 12.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER5d ExonRegion 0 30.72 72.55 27.66 28.80 46.58 92.55 74.95 40.46 52.82 58.57 77.77 125.10 150.16 127.59 36.58 110.74 111.66 127.82 34.43 99.68 75.45 137.99 96.50 61 E5_Db KnownBoundary 0 80.76 130.44 5.14 7.06 44.14 43.55 53.30 4.48 6.66 4.59 14.74 23.56 44.80 10.12 6.30 15.98 8.60 19.81 7.91 8.25 19.77 10.90 15.62 62 ER5e ExonRegion 0 23.66 25.02 1.20 0.45 0.99 3.29 3.84 1.19 1.07 1.67 0.00 0.78 0.87 0.55 0.64 0.00 0.14 0.00 0.00 0.94 1.45 1.73 0.00 63 E5_Dc KnownBoundary 0 12.59 12.56 2.28 0.00 11.80 10.33 13.69 9.16 8.42 5.32 23.22 10.65 19.48 7.36 5.32 15.21 0.00 8.46 4.14 0.00 5.25 13.41 3.59 64 E5_Dd KnownBoundary 0 3.63 0.00 0.00 2.93 8.66 2.73 0.00 0.00 0.00 0.00 7.53 0.00 5.84 0.00 0.00 8.20 9.16 5.10 0.00 2.56 0.00 3.06 8.71 65 ER5f ExonRegion 0 2.47 0.00 0.00 0.00 0.00 0.00 0.00 3.46 1.24 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 66 ER5g ExonRegion 0 5.21 4.87 3.28 2.41 3.47 2.90 2.25 5.71 1.92 4.57 0.21 1.80 1.39 0.60 1.49 0.48 0.44 0.49 0.24 0.98 0.40 1.41 0.00 67 E5_De KnownBoundary 0 33.27 43.08 21.08 20.44 41.43 5.22 7.11 32.08 6.37 28.96 2.21 24.46 21.91 0.00 14.83 3.85 0.00 2.20 0.00 6.33 0.00 8.27 0.00 68 ER5h ExonRegion 0 27.11 19.98 8.16 8.66 18.73 8.71 15.40 18.10 3.52 15.25 1.14 17.38 9.93 2.10 6.74 0.66 5.10 1.47 0.00 9.76 1.46 1.01 0.00