Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NIT2 Gene 0 68.76 50.45 69.57 39.27 51.99 81.67 28.85 39.24 66.88 26.93 106.93 79.95 48.68 110.29 122.77 111.98 152.47 28.89 31.65 55.03 41.45 59.93 44.13 2 394140 Transcript 0 14.12 26.57 14.55 8.83 15.86 39.25 14.69 18.48 21.54 8.42 11.18 18.43 19.76 15.30 13.61 20.78 21.96 9.94 10.76 18.09 9.02 11.63 18.46 3 465368 Transcript 0 100.59 31.79 78.46 58.02 73.79 105.19 46.12 56.61 108.75 21.11 85.17 106.82 77.69 89.56 94.49 97.98 126.96 18.97 14.49 55.12 31.94 89.24 44.43 4 478856 Transcript 0 2.05 2.39 3.23 2.02 5.09 2.76 2.66 2.21 8.48 4.08 2.38 2.69 3.02 3.56 1.97 2.55 3.98 4.61 10.02 4.35 2.37 1.55 5.13 5 480073 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 460317 Transcript 0 0.61 0.00 1.43 0.00 0.89 3.18 0.59 2.55 2.83 0.96 0.34 0.00 0.00 4.67 7.18 4.69 7.55 0.76 1.91 1.75 1.74 0.05 0.00 7 497785 Transcript 0 0.00 0.00 0.00 0.48 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.32 0.00 0.15 1.16 0.00 0.00 0.96 0.00 0.00 0.59 8 472392 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 11.18 18.82 7.54 0.56 6.38 16.08 6.62 0.84 0.92 1.00 12.04 0.00 0.00 3.91 7.36 9.45 10.75 1.99 5.47 8.07 13.56 4.65 14.01 10 E1_Ab KnownBoundary 0 10.30 19.47 1.45 2.03 12.48 16.52 0.00 1.81 0.00 1.45 7.63 0.00 0.00 9.54 13.35 4.36 17.86 2.16 9.60 6.33 9.33 5.88 0.00 11 E1_Ac KnownBoundary 1 90.83 97.22 27.05 2.06 32.43 85.92 47.56 2.55 4.98 4.81 84.76 0.00 0.00 17.25 37.95 71.43 60.21 19.11 27.01 44.04 67.40 18.25 124.29 12 ER1b ExonRegion 1 118.64 159.18 48.61 9.46 63.77 150.88 55.39 15.65 16.26 18.80 138.74 2.89 5.99 56.93 89.13 148.11 152.21 40.65 60.88 99.29 109.94 59.84 131.33 13 E1_Ae NovelBoundary 1 248.71 283.50 67.86 20.98 108.15 276.83 82.32 30.97 29.22 35.73 228.58 6.90 13.80 122.37 113.98 281.98 253.95 60.40 127.63 172.77 165.75 115.61 164.84 14 ER1c ExonRegion 1 214.42 250.91 78.24 19.71 101.88 256.73 83.82 31.64 33.44 36.35 237.00 4.33 9.74 118.56 174.08 286.24 271.94 62.40 102.67 166.28 166.63 101.93 192.91 15 E1a_E2a KnownJunction 1 588.25 150.17 125.69 55.87 181.07 411.98 109.26 73.19 145.86 75.83 402.94 29.56 13.64 236.15 553.19 784.24 668.26 114.20 123.11 200.96 127.88 99.63 147.51 16 E1a_E3a NovelJunction 0 6.82 0.00 0.00 1.56 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 0.00 4.89 4.45 16.24 3.65 0.00 0.00 0.00 0.00 2.33 0.00 17 E1a_E6a NovelJunction 0 0.00 0.00 3.37 1.86 0.00 0.00 2.12 0.00 0.00 0.00 12.74 0.00 0.00 2.12 0.00 0.00 13.18 1.74 0.00 0.00 2.35 0.00 4.35 18 ER1d ExonRegion 1 306.89 269.11 84.55 26.58 123.98 313.27 98.41 43.50 67.31 49.70 327.30 4.33 14.07 137.78 260.63 492.88 410.41 68.37 121.04 205.67 181.44 127.44 221.72 19 ER1e ExonRegion 1 408.78 251.70 105.49 40.95 166.63 395.52 106.46 53.35 103.97 58.39 400.55 10.82 16.42 212.46 380.06 680.21 580.66 97.09 156.37 232.20 198.13 136.85 207.43 20 E1_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.56 0.00 4.80 0.00 0.00 0.00 0.00 21 ER1f ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.99 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.57 10.41 0.00 3.19 0.00 0.00 0.00 0.00 22 ER1g ExonRegion 0 0.28 0.00 1.02 0.00 1.28 1.58 0.40 0.52 0.61 0.07 0.00 0.64 0.59 4.59 2.30 3.22 9.76 0.98 1.88 0.42 0.42 0.36 0.52 23 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E1c_E2a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 4.77 0.00 4.19 4.77 1.67 0.00 0.00 0.00 4.59 10.14 3.76 4.77 2.28 0.00 3.13 3.03 0.00 0.00 25 ER1h ExonRegion 0 1.83 0.00 2.45 0.00 2.68 3.79 0.44 3.46 3.71 1.22 1.03 0.00 0.00 9.42 11.41 5.75 7.48 0.00 2.55 2.13 2.20 0.14 0.00 26 E2_Ab NovelBoundary 0 139.36 39.60 50.29 24.11 34.89 104.20 40.32 34.95 83.30 25.57 67.07 5.70 6.01 57.51 32.26 135.43 145.77 34.99 20.61 30.49 34.78 19.04 9.30 27 ER2a ExonRegion 1 376.48 132.95 116.10 42.59 143.15 343.61 84.73 65.47 127.53 63.08 329.08 12.99 15.24 229.61 381.15 611.89 550.42 99.78 100.34 155.05 128.37 84.38 110.49 28 ER2b ExonRegion 0 139.10 69.54 104.75 33.62 61.45 128.40 35.96 51.74 101.36 45.89 254.50 85.89 57.04 120.97 130.84 180.98 349.84 46.11 35.18 99.16 123.47 47.15 42.25 29 E2a_E3a KnownJunction 1 118.17 86.89 195.65 62.66 58.15 37.59 16.65 71.35 137.38 86.33 574.94 228.22 140.25 192.42 200.75 111.25 669.47 58.08 32.57 241.67 245.50 79.85 88.52 30 E2a_E4a NovelJunction 0 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 0.00 1.29 10.06 0.00 0.00 3.00 0.00 0.00 0.00 0.00 3.95 3.26 3.15 0.00 0.00 31 ER3a ExonRegion 0 124.77 112.77 198.98 93.98 115.81 143.40 42.33 81.08 173.17 72.78 382.19 176.76 112.68 315.04 393.04 492.22 531.23 96.31 130.44 191.86 114.25 179.56 159.28 32 E3a_E4a KnownJunction 0 57.79 143.40 225.54 103.42 298.39 450.08 131.16 82.48 141.12 64.33 286.18 259.43 106.97 233.80 301.26 185.42 400.84 45.56 65.51 143.88 72.28 122.47 60.44 33 E3b_E4a KnownJunction 0 0.00 5.59 5.23 1.63 12.48 0.00 1.85 0.00 0.00 0.00 5.00 6.30 6.01 2.47 4.45 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 34 ER3b ExonRegion 0 0.22 2.78 4.06 1.36 7.60 0.29 1.32 3.55 0.52 0.06 5.49 13.22 4.94 5.64 1.37 5.01 4.86 0.39 3.69 5.60 0.00 2.19 1.55 35 ER4a ExonRegion 0 76.16 221.77 211.73 106.25 238.37 457.60 151.55 90.49 152.37 52.21 332.79 309.34 119.10 289.41 349.91 245.81 370.49 49.37 72.68 127.33 68.10 154.33 103.94 36 E4_Da NovelBoundary 0 47.12 182.07 164.87 92.50 109.34 208.40 79.27 81.70 106.25 48.81 228.90 210.37 74.51 179.23 244.14 185.42 285.09 48.91 67.58 112.81 61.65 118.18 97.74 37 E4b_E5a KnownJunction 0 220.11 270.54 264.01 152.03 170.12 285.12 74.68 113.78 184.72 94.20 356.41 345.11 161.84 436.52 449.72 347.17 543.80 70.06 91.20 175.26 109.65 269.18 132.14 38 E4b_E5b KnownJunction 0 0.00 0.00 4.38 0.00 4.33 0.00 0.00 0.00 4.48 2.69 0.00 0.00 0.00 4.59 0.00 0.00 0.00 5.02 17.32 0.00 0.00 0.00 4.35 39 ER4b ExonRegion 0 139.34 248.44 232.82 131.37 174.07 281.59 77.53 107.64 175.18 74.42 364.67 329.76 162.07 386.54 405.21 310.09 485.05 79.15 102.29 150.12 104.19 215.07 145.20 40 ER5a ExonRegion 0 285.44 185.53 261.59 150.37 149.41 210.32 77.38 111.82 187.49 91.83 471.48 428.20 201.67 501.59 485.99 353.78 596.27 104.85 109.56 173.13 125.26 226.19 114.37 41 E5_Da KnownBoundary 1 180.33 16.31 77.44 72.92 45.16 101.02 34.27 41.65 94.39 26.24 56.01 93.93 46.91 77.17 76.89 77.24 129.13 11.86 17.79 50.62 20.20 70.60 47.80 42 E5a_E5b KnownJunction 1 256.34 167.08 216.08 97.32 71.22 87.00 27.95 75.90 89.41 65.03 347.25 266.19 76.46 450.71 451.57 291.29 383.17 80.83 118.40 122.72 132.33 136.80 108.24 43 E5a_E6a NovelJunction 0 0.00 2.96 1.57 0.00 0.00 0.00 1.77 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 3.26 3.15 8.21 0.00 44 ER5b ExonRegion 0 146.23 32.97 67.09 56.94 82.08 79.11 40.56 56.91 95.67 24.94 80.97 84.44 72.68 71.41 94.02 79.76 130.47 12.83 17.33 60.23 20.56 89.79 44.03 45 E5_Db KnownBoundary 0 211.44 65.32 59.49 60.96 109.00 120.61 53.35 60.71 106.05 22.75 83.81 120.79 74.83 89.47 81.34 99.38 159.89 12.93 29.74 70.24 14.70 55.36 51.30 46 ER5c ExonRegion 0 100.59 31.79 78.46 58.02 73.79 105.19 46.12 56.61 108.75 21.11 85.17 106.82 77.69 89.56 94.49 97.98 126.96 18.97 14.49 55.12 31.94 89.24 44.43 47 E5_Ab KnownBoundary 0 144.10 39.27 91.07 63.89 66.72 98.58 28.57 55.57 84.26 19.21 91.18 103.23 107.62 92.35 131.90 107.49 119.78 22.92 12.61 64.56 66.16 77.34 52.16 48 ER5d ExonRegion 0 209.76 124.10 236.65 124.59 107.54 176.27 54.69 109.43 175.07 80.25 351.34 353.73 146.66 479.86 497.53 313.04 489.74 100.43 103.74 153.25 168.61 146.30 150.17 49 E5c_E6a KnownJunction 0 230.63 149.18 231.75 122.70 147.62 205.11 66.46 108.76 170.02 86.01 351.56 342.71 131.65 443.23 444.90 242.67 511.55 119.84 105.23 131.35 159.57 154.55 96.72 50 ER5e ExonRegion 0 0.00 0.00 0.00 0.95 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.65 0.00 0.30 2.31 0.00 0.00 1.91 0.00 0.00 1.17 51 ER6a ExonRegion 0 265.82 213.94 198.29 97.04 129.89 264.14 74.09 100.12 152.03 93.84 374.08 334.36 132.69 483.68 439.48 383.59 572.81 128.10 117.62 137.70 196.38 165.07 138.65 52 E6_Da KnownBoundary 0 3.63 3.03 6.83 5.96 4.33 10.05 0.00 3.78 17.88 5.83 2.58 0.00 0.00 2.47 0.00 0.00 9.54 1.95 0.00 9.33 10.93 0.00 16.13 53 E6a_E7a KnownJunction 0 136.10 174.51 162.56 87.33 91.60 157.30 52.33 95.54 123.73 92.49 282.18 242.78 86.52 443.35 456.27 250.87 416.83 91.45 149.56 127.20 117.56 141.76 145.97 54 ER6b ExonRegion 0 4.11 4.77 2.09 4.05 5.85 5.53 5.32 4.43 12.48 5.47 4.76 5.37 6.04 2.53 3.94 5.09 7.96 4.20 2.73 8.70 4.74 3.10 5.91 55 E6_Db NovelBoundary 0 13.34 6.64 13.25 16.65 16.21 5.00 2.25 3.94 12.99 8.46 2.68 6.30 18.99 7.36 0.00 0.00 0.00 5.84 0.00 10.74 2.90 12.37 15.54 56 ER7a ExonRegion 0 103.43 115.15 192.51 100.22 122.62 176.10 62.52 87.78 139.34 70.51 262.80 131.68 69.97 365.82 439.50 222.04 400.08 71.71 77.57 146.96 117.58 116.40 93.74 57 E7a_E8a KnownJunction 1 88.02 118.20 168.65 99.89 125.89 176.77 57.68 90.94 124.83 64.50 229.53 38.86 28.41 342.28 390.26 255.92 404.49 82.74 24.66 118.06 112.37 85.60 69.91 58 ER8a ExonRegion 0 77.90 76.04 199.47 102.44 111.71 147.39 46.13 105.13 139.90 70.72 249.62 94.78 52.93 344.40 404.78 349.17 371.70 80.08 76.28 97.80 100.78 151.20 90.09 59 E8a_E9a KnownJunction 1 90.16 81.30 259.30 127.42 103.14 112.49 32.37 118.70 177.89 79.51 285.34 105.78 45.13 376.13 403.98 350.25 335.76 80.92 156.33 139.34 83.65 254.61 101.50 60 E9_Aa NovelBoundary 0 3.33 22.17 3.93 5.39 0.00 11.58 7.99 2.14 6.05 0.00 2.32 11.70 0.00 0.00 0.00 7.86 12.62 9.53 0.00 5.11 0.00 0.00 0.00 61 ER9a ExonRegion 0 116.83 97.02 171.90 88.42 93.48 136.14 33.11 92.78 134.66 62.02 179.74 124.09 112.11 214.83 254.27 228.07 261.22 54.60 75.87 90.97 60.22 151.58 82.65 62 E9_Da KnownBoundary 1 42.53 84.20 17.89 21.24 63.07 93.41 31.58 36.80 44.85 19.72 20.58 41.41 50.65 34.38 52.78 67.50 29.36 9.66 12.89 17.19 2.29 44.58 11.61 63 ER9b ExonRegion 1 17.06 34.31 21.55 17.10 25.35 62.41 22.77 36.12 42.17 15.85 10.32 36.87 39.51 26.68 19.85 32.11 33.18 17.89 16.04 28.10 4.48 18.61 22.92 64 IG35 Intergenic 0 7.37 13.99 11.66 12.40 19.71 17.04 20.75 13.43 22.18 10.71 8.31 26.59 35.86 13.10 9.57 13.53 21.02 12.47 9.12 25.33 6.68 8.53 9.55 65 IG35_AR1 ActiveIntergenicRegion 0 1.72 2.99 3.41 3.36 7.94 19.71 5.30 2.11 7.18 0.75 5.80 2.98 6.89 10.91 8.79 6.50 4.75 0.98 6.07 10.51 0.76 5.79 6.70 66 IG35_SR1 SilentIntergenicRegion 0 8.44 22.95 20.33 16.27 22.30 53.54 23.97 26.80 45.86 17.67 6.09 35.63 25.66 24.44 14.45 35.72 29.08 24.84 20.76 41.62 13.21 18.70 26.26 67 IG35_AR2 ActiveIntergenicRegion 0 4.56 11.74 13.51 7.11 15.84 35.55 14.39 15.71 23.12 5.37 4.52 15.55 4.59 12.27 12.77 12.59 18.24 8.81 11.30 21.78 7.66 5.76 11.58 68 IG35_AR3 ActiveIntergenicRegion 0 6.95 15.92 5.07 6.15 18.92 10.65 17.05 8.45 12.08 6.04 2.93 11.04 21.59 6.03 5.77 4.50 5.83 4.88 4.02 11.82 1.67 4.21 5.19 69 IG35_AR4 ActiveIntergenicRegion 0 11.45 6.62 15.97 7.92 26.26 8.36 16.97 15.41 16.57 7.45 5.31 14.07 35.19 9.72 6.94 11.47 11.68 6.76 8.40 15.42 2.53 12.31 5.82 70 IG35_SR3 SilentIntergenicRegion 0 9.39 11.06 10.37 13.81 22.82 11.02 19.93 9.85 19.53 10.47 3.59 20.51 31.51 11.80 10.25 7.95 11.66 7.45 8.69 20.23 5.59 6.96 5.60 71 IG35_AR5 ActiveIntergenicRegion 0 10.99 27.12 14.90 14.38 22.11 14.68 21.41 15.86 21.01 9.90 10.08 47.04 33.98 11.29 8.17 10.63 24.41 13.03 6.81 31.99 5.91 9.33 7.86 72 IG35_SR4 SilentIntergenicRegion 0 7.05 14.94 11.21 13.63 20.50 13.83 24.92 13.82 25.86 14.34 10.44 33.78 52.55 15.05 9.64 15.22 27.68 14.85 10.74 27.63 7.07 9.59 11.56 73 IG35_AR6 ActiveIntergenicRegion 0 10.65 15.53 19.80 18.60 26.43 20.29 26.00 19.49 26.55 13.22 14.41 26.11 49.27 18.55 13.18 21.13 26.52 20.67 10.80 34.06 10.23 12.82 9.81 74 IG35_SR5 SilentIntergenicRegion 0 1.68 7.98 4.92 9.65 3.50 12.23 5.18 7.78 12.08 6.75 4.31 17.87 45.46 6.81 3.09 1.68 10.24 4.67 6.21 28.37 0.31 1.34 3.84 75 IG35_SR6 SilentIntergenicRegion 0 3.21 7.04 4.35 9.38 12.16 14.82 16.14 7.43 16.99 7.15 5.44 18.75 15.66 8.73 7.27 9.86 16.42 8.36 5.97 19.33 6.52 3.46 8.47