Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-141M3.2 Gene 0 1.40 10.54 23.09 6.35 5.07 5.64 8.74 5.26 3.78 0.54 0.03 0.05 0.00 0.00 0.08 0.00 0.00 12.45 10.18 13.62 3.94 2.35 1.63 2 451200 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 426937 Transcript 0 0.62 0.00 0.72 0.00 0.00 0.00 0.00 3.21 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.01 0.00 0.00 0.00 0.00 0.00 4 418093 Transcript 0 0.25 1.37 3.23 0.96 0.32 0.66 1.41 0.09 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.41 0.74 2.93 0.00 0.00 0.00 5 383748 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 443313 Transcript 0 0.37 1.30 4.06 1.28 1.13 0.75 1.21 0.15 0.72 0.05 0.06 0.00 0.00 0.00 0.17 0.00 0.00 2.87 4.64 2.46 0.51 0.06 0.43 7 446977 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 418176 Transcript 0 0.19 0.03 0.62 0.19 0.02 0.01 1.27 0.53 0.01 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.03 0.34 0.26 0.00 0.00 9 463888 Transcript 0 0.00 5.80 9.69 2.16 0.16 0.22 1.60 8.08 1.20 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.37 9.57 3.50 0.18 5.70 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E2a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 Ix_AR1 ActiveIntronRegion 0 27.21 0.00 0.16 0.70 8.77 0.95 4.00 15.34 0.00 0.29 1.00 0.62 0.67 0.00 0.25 0.00 0.57 0.48 1.10 0.18 0.38 0.90 0.25 18 Ix Intron 0 6.78 9.55 20.52 15.33 15.50 19.58 26.90 13.70 13.09 11.57 1.36 0.31 0.17 0.00 0.18 0.00 0.00 62.91 36.91 24.56 18.76 13.90 23.46 19 Ix_SR1 SilentIntronRegion 0 6.79 9.57 20.56 15.36 15.52 19.61 26.95 13.72 13.11 11.59 1.36 0.31 0.17 0.00 0.18 0.00 0.00 63.02 36.97 24.60 18.79 13.92 23.50 20 ER3a ExonRegion 0 1.85 0.00 0.54 0.00 0.00 0.00 0.00 1.30 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 21 E3a_E5c KnownJunction 0 0.00 0.00 1.63 0.00 0.00 0.00 0.00 8.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 0.00 0.00 0.00 0.00 22 Ix Intron 0 2.71 5.26 6.28 7.32 6.23 11.48 17.75 3.38 4.89 3.08 0.44 0.00 0.00 0.00 0.00 0.00 0.00 12.98 12.84 11.79 3.76 4.44 8.18 23 Ix_SR1 SilentIntronRegion 0 3.58 7.80 8.45 9.62 11.17 16.76 24.80 4.07 3.53 3.86 1.09 0.00 0.00 0.00 0.00 0.00 0.00 21.25 12.94 13.68 7.22 5.64 9.94 24 Ix_AR2 ActiveIntronRegion 0 2.22 3.81 5.40 6.23 2.89 10.96 17.73 2.76 6.89 3.43 0.52 0.00 0.00 0.00 0.00 0.00 0.00 10.26 11.04 13.20 4.12 3.90 7.41 25 Ix_SR2 SilentIntronRegion 0 2.12 0.00 2.45 8.52 8.03 5.50 20.19 0.43 12.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.39 13.54 17.29 0.28 0.00 2.94 26 Ix_AR3 ActiveIntronRegion 0 0.17 2.17 5.15 10.25 6.12 8.14 15.56 5.59 10.10 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.31 19.29 12.53 0.09 0.14 6.84 27 Ix_SR3 SilentIntronRegion 0 3.24 4.70 5.94 7.14 5.00 7.64 14.40 3.94 4.57 3.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.40 13.35 11.37 1.79 4.69 7.75 28 Ix_SR1 SilentIntronRegion 0 4.59 15.76 7.20 15.07 8.88 9.34 16.93 5.45 3.46 5.37 0.28 0.00 0.00 0.00 0.00 0.00 0.00 13.40 9.67 11.38 5.78 6.74 7.92 29 ER4a ExonRegion 0 0.00 0.96 0.45 1.15 0.00 0.00 0.70 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.47 0.00 0.00 0.00 30 E4_Ac KnownBoundary 0 9.71 98.01 41.99 16.78 14.69 97.10 102.10 4.07 2.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.90 29.93 59.19 22.55 0.00 16.56 31 ER4b ExonRegion 0 2.91 36.86 20.45 6.64 6.44 39.60 35.79 3.46 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.03 14.93 27.79 7.99 0.20 7.34 32 ER4c ExonRegion 0 11.36 126.44 84.92 20.55 36.61 92.18 96.71 17.12 12.94 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 90.72 97.58 83.21 37.22 6.42 13.66 33 E4a_E5c KnownJunction 0 6.52 63.15 98.34 22.87 47.96 20.90 70.84 16.06 21.47 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 104.63 66.07 84.05 11.80 6.12 8.11 34 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 36 E5_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E5a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER5c ExonRegion 0 0.19 0.03 0.62 0.19 0.02 0.01 1.27 0.53 0.01 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.03 0.34 0.26 0.00 0.00 39 E5_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER5d ExonRegion 0 3.24 27.44 63.69 19.96 13.97 17.36 13.62 19.67 12.60 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.05 25.33 47.54 22.17 4.24 2.43 41 E5b_E6b KnownJunction 0 0.00 24.34 113.30 31.26 11.38 10.22 5.92 17.17 16.44 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.96 12.80 99.33 47.01 9.00 4.10 42 I5 Intron 0 2.74 13.28 15.04 5.02 12.91 3.13 15.11 8.48 7.69 0.50 0.00 0.21 0.00 0.00 0.00 0.00 0.00 10.75 8.81 13.77 1.94 0.61 1.21 43 I5_SR1 SilentIntronRegion 0 2.75 13.30 15.07 5.03 12.93 3.14 15.14 8.50 7.70 0.50 0.00 0.21 0.00 0.00 0.00 0.00 0.00 10.77 8.83 13.80 1.95 0.61 1.21 44 E6_Aa NovelBoundary 0 3.56 14.47 35.51 0.00 21.39 0.00 16.61 6.16 13.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.71 9.04 11.31 2.78 0.00 0.00 45 ER6a ExonRegion 0 0.00 5.80 9.69 2.16 0.16 0.22 1.60 8.08 1.20 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.37 9.57 3.50 0.18 5.70 46 E6_Ab KnownBoundary 0 0.00 15.79 29.04 5.06 0.00 0.00 3.93 15.44 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.46 0.00 15.66 5.50 0.00 8.28 47 ER6b ExonRegion 0 6.82 30.83 170.81 41.87 18.18 15.79 26.14 40.66 25.78 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 120.76 90.86 123.40 34.11 14.44 11.89 48 E6a_E7a KnownJunction 0 3.11 20.19 195.65 45.98 74.87 57.64 33.70 32.94 32.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 112.30 77.65 110.83 23.78 14.14 0.00 49 ER7a ExonRegion 0 5.38 90.41 177.22 42.79 63.14 64.65 107.59 36.96 32.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.44 58.34 92.38 23.10 12.30 12.85 50 E7a_E8a KnownJunction 0 6.59 122.41 117.12 41.72 34.38 18.63 30.91 31.30 29.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.86 29.74 68.84 22.30 27.49 3.76 51 E7a_E9a NovelJunction 0 0.00 13.22 6.18 5.49 4.41 3.01 4.68 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.84 4.89 6.52 0.00 0.00 0.00 52 E7a_E10a KnownJunction 0 0.00 3.03 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 7.53 5.62 0.00 0.00 0.00 53 E7b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER7b ExonRegion 0 0.00 4.07 4.90 1.36 0.00 1.83 3.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 2.13 0.00 0.00 0.00 55 E8_Aa NovelBoundary 0 0.00 16.58 11.00 12.59 7.47 5.34 1.94 5.05 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 56 ER8a ExonRegion 0 6.12 52.48 111.15 33.37 18.07 7.67 18.66 25.67 17.66 1.04 0.00 0.72 0.00 0.00 0.00 0.00 0.00 19.68 29.30 51.16 8.93 19.62 4.31 57 ER8b ExonRegion 0 2.12 6.10 4.08 1.36 3.57 0.00 1.32 1.73 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.71 0.00 0.00 0.00 58 ER9a ExonRegion 0 0.00 3.52 14.65 2.78 0.00 8.24 1.14 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.24 4.76 3.66 0.00 0.00 0.00 59 E9_Da KnownBoundary 0 0.00 6.38 32.79 8.99 0.00 9.65 6.62 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.60 24.00 6.20 0.00 0.00 0.00 60 ER9b ExonRegion 0 0.51 1.77 6.01 0.77 0.64 1.32 2.12 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 1.47 2.39 0.00 0.00 0.00 61 E9_Db NovelBoundary 0 3.04 0.00 16.26 8.26 17.06 8.29 13.65 0.00 15.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.04 9.41 12.08 6.18 0.00 0.00 62 ER10a ExonRegion 0 0.00 0.28 2.72 0.92 1.11 0.92 0.55 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.79 0.52 0.00 0.00 0.00 63 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 ER11a ExonRegion 0 1.47 1.89 8.58 4.22 3.41 2.08 4.30 0.60 2.13 0.20 0.22 0.00 0.00 0.00 0.67 0.00 0.00 8.71 9.23 3.70 2.04 0.24 1.70