Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF167 Gene 0 19.22 40.42 31.47 35.30 28.60 34.83 39.97 27.75 19.76 33.45 9.98 3.72 10.37 17.52 10.79 11.13 19.01 60.86 43.70 28.60 17.01 13.28 16.73 2 426540 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 431636 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 341840 Transcript 0 2.12 3.48 0.61 1.90 6.76 1.83 8.57 1.96 5.07 3.11 0.00 0.00 8.89 2.86 0.69 0.00 2.17 2.04 7.38 1.29 0.00 1.64 1.08 5 273320 Transcript 0 28.20 51.58 56.93 63.64 38.32 35.90 40.52 38.68 23.02 38.56 10.86 4.77 15.66 10.00 14.35 6.89 18.50 15.68 28.92 23.33 5.86 18.48 10.75 6 418719 Transcript 0 0.00 3.35 3.49 0.00 0.00 0.00 20.23 0.00 2.49 0.00 0.00 0.00 6.82 7.42 4.45 3.50 3.93 11.65 9.04 2.56 2.53 0.00 0.00 7 447279 Transcript 0 0.00 0.00 0.61 0.00 0.00 0.00 0.91 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 8 496563 Transcript 0 0.43 4.90 3.56 9.91 0.00 12.21 11.43 4.32 4.88 8.42 5.71 0.00 4.26 1.40 4.62 0.00 11.55 6.34 4.34 3.87 2.65 2.23 2.80 9 419137 Transcript 0 0.00 0.00 0.00 1.44 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.33 0.00 0.24 1.00 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.27 2.70 1.51 0.29 0.19 1.20 0.00 0.00 11 E1_Ad KnownBoundary 0 7.41 8.68 7.69 4.26 35.14 101.87 112.88 1.64 6.83 5.24 2.21 0.00 0.00 21.01 13.35 11.96 45.07 51.94 44.61 37.84 23.17 3.12 14.77 12 ER1b ExonRegion 0 2.12 0.00 1.23 0.00 6.42 15.40 25.42 0.00 0.49 1.15 0.00 0.00 0.00 0.00 2.90 2.97 3.30 11.09 9.56 5.11 6.61 2.08 0.00 13 ER1c ExonRegion 0 5.24 5.04 2.45 1.75 20.39 52.57 60.40 1.32 3.59 5.24 1.10 0.00 0.00 13.07 6.91 7.78 25.94 38.10 30.19 21.28 16.16 3.57 5.17 14 ER1d ExonRegion 0 2.12 4.20 7.03 6.17 11.16 23.98 22.32 4.94 8.14 14.10 3.77 2.03 0.00 18.21 7.25 10.23 18.45 61.69 33.05 29.96 15.40 6.02 8.35 15 E1_Ae KnownBoundary 0 3.48 3.03 13.48 20.84 8.49 2.21 7.86 13.68 14.84 24.90 9.74 6.30 0.00 44.26 22.50 22.90 13.00 145.17 88.85 38.93 17.54 22.04 23.82 16 ER1e ExonRegion 0 3.89 4.78 16.00 17.24 7.88 2.78 12.27 9.20 11.52 31.03 6.84 2.93 7.99 23.48 8.78 24.10 13.47 162.70 88.93 36.80 11.20 14.98 21.43 17 E1_Da KnownBoundary 0 2.96 0.00 7.10 7.79 7.13 0.00 6.76 1.81 0.00 14.80 0.00 0.00 0.00 10.18 0.00 4.36 0.00 81.62 7.53 24.42 11.55 5.27 16.39 18 E1a_E2a KnownJunction 0 3.78 9.21 13.19 8.72 0.00 7.10 12.67 7.80 16.67 17.68 0.00 0.00 6.01 0.00 0.00 15.12 16.92 82.28 71.63 20.13 3.15 3.12 4.18 19 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER1f ExonRegion 0 2.12 3.02 5.76 4.38 4.77 2.33 6.08 5.19 1.20 16.68 0.42 0.00 5.83 4.57 0.00 4.98 0.18 72.71 7.23 17.48 6.73 6.87 16.11 21 E1b_E2a KnownJunction 0 0.00 6.71 5.35 1.53 6.88 5.28 4.50 7.15 1.74 18.67 2.26 0.00 6.82 4.71 0.00 3.59 0.00 65.12 0.00 12.40 2.90 5.76 8.02 22 ER2a ExonRegion 0 4.41 19.62 19.13 26.35 19.33 39.68 38.29 27.74 21.51 44.84 8.82 1.38 7.42 27.88 9.90 13.03 21.41 123.69 55.01 37.28 26.80 10.16 21.78 23 E2_Ab KnownBoundary 0 10.15 27.36 49.05 64.63 36.50 25.27 57.37 83.87 58.97 60.71 37.54 12.60 13.96 37.91 20.15 45.12 49.46 324.46 98.64 82.13 52.39 35.27 35.51 24 ER2b ExonRegion 0 1.55 15.33 20.31 22.34 5.30 19.08 22.60 25.85 26.21 40.98 14.54 1.23 0.25 20.41 10.55 8.21 15.95 102.28 38.84 25.98 20.50 8.13 19.26 25 E2_Da NovelBoundary 0 0.00 9.80 8.04 17.91 32.00 50.60 11.31 10.43 7.03 11.52 2.68 0.00 0.00 2.47 10.75 0.00 0.00 20.35 12.24 14.64 0.00 3.00 0.00 26 E2a_E3a KnownJunction 0 3.78 28.48 16.65 19.51 6.79 18.17 32.64 17.66 18.87 31.86 11.69 0.00 0.00 22.07 8.90 3.85 27.30 89.00 24.19 55.67 32.74 5.33 15.28 27 E2a_E4a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.13 2.88 8.22 0.00 0.00 28 E3_Aa NovelBoundary 0 9.33 2.89 4.14 3.10 7.56 0.00 15.06 3.74 7.70 4.59 2.63 0.00 0.00 0.00 0.00 0.00 4.58 18.78 0.00 5.88 0.00 2.69 3.33 29 ER3a ExonRegion 0 13.83 42.51 16.08 22.12 19.68 26.93 30.31 22.21 21.13 36.28 10.54 1.01 9.06 23.89 13.95 15.88 24.60 166.96 51.14 39.14 31.73 17.04 27.31 30 E3_Ab KnownBoundary 0 23.19 36.44 14.10 27.37 59.17 52.36 56.09 21.81 16.15 40.96 14.27 6.15 13.47 21.96 30.53 33.75 27.02 202.00 75.30 27.68 24.71 19.66 40.04 31 ER3b ExonRegion 0 5.75 34.87 25.55 21.68 18.34 28.94 42.96 17.43 12.27 31.30 12.18 1.13 11.82 19.61 14.96 17.34 26.58 122.95 52.86 21.08 27.94 9.98 17.13 32 E3_Da NovelBoundary 0 3.78 20.72 1.15 2.06 0.00 8.01 10.51 4.31 4.25 3.04 2.21 0.00 6.66 2.47 0.00 4.02 0.00 11.61 0.00 5.75 2.41 3.12 4.35 33 E3a_E4a KnownJunction 0 0.00 23.29 12.71 18.45 11.71 16.30 14.71 15.48 7.38 20.25 6.95 0.00 6.82 9.89 5.56 3.33 29.64 44.06 35.39 26.59 10.75 5.63 11.35 34 E3a_E5a KnownJunction 0 0.00 3.35 3.49 0.00 0.00 0.00 20.23 0.00 2.49 0.00 0.00 0.00 6.82 7.42 4.45 3.50 3.93 11.65 9.04 2.56 2.53 0.00 0.00 35 ER4a ExonRegion 0 2.76 18.46 8.74 16.01 10.41 11.06 22.09 11.27 10.50 26.14 6.79 0.00 4.08 14.12 5.83 2.26 14.50 63.59 32.51 23.03 20.94 10.26 12.64 36 E4a_E5a KnownJunction 0 13.41 33.48 11.74 13.32 7.98 16.98 42.97 15.65 7.18 27.99 2.68 0.00 6.17 19.66 17.80 4.36 8.98 62.39 36.80 30.10 13.90 2.69 16.13 37 E5_Aa NovelBoundary 0 3.78 3.29 3.87 6.96 11.88 0.00 12.72 1.60 1.59 2.69 0.00 0.00 6.82 5.47 0.00 3.16 0.00 8.37 4.80 0.00 8.83 0.00 17.16 38 ER5a ExonRegion 0 8.95 48.68 22.05 28.32 14.33 38.74 54.25 28.66 20.91 47.38 15.14 6.99 19.24 32.10 12.50 9.88 22.09 90.13 55.53 43.29 30.73 12.39 19.47 39 E5_Da KnownBoundary 0 2.96 15.92 12.06 24.71 3.65 22.94 33.65 10.93 12.18 20.74 9.00 0.00 13.64 5.18 0.00 0.00 26.93 11.48 9.51 11.31 10.56 2.45 3.41 40 E5a_E6a KnownJunction 0 0.00 12.56 8.07 6.86 0.00 7.44 8.21 9.69 7.70 17.33 2.21 0.00 0.00 14.72 0.00 0.00 8.51 22.30 40.94 12.02 11.31 3.12 4.35 41 E5a_E6b KnownJunction 0 0.00 3.09 2.42 3.33 0.00 7.78 6.01 2.18 5.38 7.44 4.16 0.00 20.94 9.48 0.00 0.00 3.74 12.64 14.31 3.26 2.97 8.51 11.61 42 E5a_E7a KnownJunction 0 0.00 8.62 1.45 3.13 0.00 8.69 0.00 1.77 0.00 0.00 0.00 0.00 0.00 2.47 4.45 0.00 0.00 10.90 0.00 3.26 0.00 0.00 0.00 43 E5a_E8a KnownJunction 0 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER5b ExonRegion 0 0.43 4.90 3.56 9.91 0.00 12.21 11.43 4.32 4.88 8.42 5.71 0.00 4.26 1.40 4.62 0.00 11.55 6.34 4.34 3.87 2.65 2.23 2.80 45 E5_Db NovelBoundary 0 7.04 11.97 6.18 25.84 4.33 21.86 45.49 15.94 3.21 5.96 7.32 0.00 0.00 15.01 6.30 0.00 12.44 15.05 16.47 20.77 10.63 8.39 11.27 46 Ix Intron 0 7.99 18.71 9.51 17.60 17.93 13.36 23.52 12.74 7.14 9.91 4.42 2.46 8.07 8.25 2.48 4.90 7.37 19.26 15.08 14.14 7.03 8.20 6.56 47 Ix_SR1 SilentIntronRegion 0 6.44 14.18 8.37 12.94 17.39 15.15 23.42 10.28 6.48 8.18 5.14 2.49 7.41 9.21 3.10 5.37 7.87 22.53 17.40 13.56 8.15 6.83 7.94 48 Ix_AR1 ActiveIntronRegion 0 9.79 23.98 10.87 23.02 18.62 11.37 23.74 15.61 7.94 11.93 3.62 2.45 8.86 7.19 1.78 4.38 6.84 15.61 12.48 14.88 5.79 9.81 5.00 49 E6_Aa NovelBoundary 0 15.41 28.15 5.88 8.69 15.53 5.17 12.90 1.81 1.62 11.04 0.00 0.00 0.00 2.18 0.00 0.00 4.11 2.49 0.00 11.57 3.09 0.00 0.00 50 E6_Ab NovelBoundary 0 0.00 31.70 4.97 15.25 8.57 7.21 18.02 13.88 5.64 2.53 7.16 0.00 0.00 5.00 0.00 0.00 0.00 1.62 4.52 11.70 5.68 0.00 7.34 51 ER6a ExonRegion 1 4.23 24.40 9.19 16.01 4.68 21.09 19.53 12.96 8.95 19.50 2.90 1.08 3.52 14.21 0.73 2.97 7.43 22.63 34.24 15.96 18.18 7.81 7.34 52 ER6b ExonRegion 0 21.31 68.04 28.01 45.08 45.91 43.00 51.48 32.83 18.87 39.02 12.85 7.25 24.40 24.78 5.05 9.18 17.12 53.87 47.72 33.96 23.29 17.92 21.66 53 E6_Da KnownBoundary 0 26.08 91.37 39.56 67.66 77.25 99.77 65.14 46.82 19.42 47.79 17.53 0.00 55.52 35.91 17.80 19.65 8.51 39.71 42.17 46.66 16.93 13.72 31.50 54 ER6c ExonRegion 0 21.62 54.43 37.54 44.80 37.02 49.17 59.29 32.12 27.16 39.47 12.79 6.27 14.48 23.62 7.03 18.10 25.02 87.59 64.85 35.99 24.40 18.84 32.70 55 E6_Db KnownBoundary 0 28.67 64.26 25.55 46.81 81.32 61.39 54.72 28.96 29.98 43.44 16.58 5.85 6.33 34.26 8.90 7.69 13.56 49.50 67.01 31.83 20.20 2.76 32.95 56 E6b_E7a KnownJunction 0 0.00 0.00 1.21 0.00 0.00 0.00 1.81 0.00 0.00 2.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 57 ER6d ExonRegion 0 43.46 70.38 54.16 51.72 50.73 56.80 60.37 42.97 29.74 43.93 14.44 3.21 8.96 19.91 13.37 13.60 25.13 55.41 66.24 37.35 21.30 19.64 19.23 58 E6_Dc KnownBoundary 0 54.31 76.96 85.45 68.39 36.33 35.32 88.50 62.15 28.79 44.05 2.16 12.30 0.00 14.30 6.30 6.92 21.41 50.32 24.00 40.84 11.68 10.41 17.93 59 ER6e ExonRegion 0 28.20 51.58 56.93 63.64 38.32 35.90 40.52 38.68 23.02 38.56 10.86 4.77 15.66 10.00 14.35 6.89 18.50 15.68 28.92 23.33 5.86 18.48 10.75 60 E6_Dd NovelBoundary 0 6.52 11.71 9.17 17.15 11.38 8.52 24.38 7.80 4.83 6.34 0.00 0.00 0.00 2.47 4.45 0.00 3.55 2.57 16.85 2.88 0.00 0.00 0.00 61 Ix Intron 0 4.80 19.66 7.33 8.80 9.06 8.21 20.89 12.86 6.76 17.11 2.27 1.29 4.55 5.85 4.09 4.26 6.34 15.95 9.69 8.85 4.11 2.27 2.61 62 Ix_SR1 SilentIntronRegion 0 0.33 4.47 0.26 0.00 0.58 1.99 2.96 1.37 0.62 2.17 2.11 4.03 0.84 3.21 0.64 0.00 0.72 2.62 3.88 0.92 8.73 0.00 0.64 63 Ix_AR2 ActiveIntronRegion 0 4.59 23.63 8.85 9.93 11.37 7.40 25.83 14.99 6.67 24.51 2.65 1.58 4.14 7.12 4.30 3.68 6.64 18.47 11.92 9.91 3.85 3.04 2.51 64 Ix_SR2 SilentIntronRegion 0 6.25 20.65 8.06 10.34 9.52 10.67 21.83 14.33 8.58 15.12 2.01 0.29 5.96 5.53 4.91 5.98 7.70 17.63 9.48 10.22 3.04 2.27 3.26 65 E7_Aa NovelBoundary 0 44.01 58.94 18.57 24.54 27.59 53.26 45.09 30.97 15.28 25.71 53.28 19.36 6.33 19.19 28.56 30.85 35.06 20.19 48.10 40.84 24.46 22.72 23.22 66 ER7a ExonRegion 0 10.64 20.04 9.69 10.71 11.34 7.88 13.94 13.00 6.51 13.72 5.02 7.83 11.21 11.34 22.27 14.50 11.91 29.23 14.67 17.59 8.70 3.18 8.67 67 E7_Da KnownBoundary 0 0.00 14.21 5.97 8.86 3.57 6.98 6.58 24.36 10.82 15.93 0.00 0.00 0.00 0.00 4.45 8.54 8.70 15.46 11.86 18.66 5.87 0.00 4.35 68 ER7b ExonRegion 0 4.86 11.06 2.35 8.26 10.14 5.83 14.96 18.07 9.93 11.96 2.84 0.00 3.24 2.58 1.63 2.14 5.89 19.87 11.71 8.37 0.87 1.08 1.37 69 E7_Db KnownBoundary 0 7.33 11.84 1.48 5.69 11.97 8.12 23.05 11.75 12.73 8.27 0.00 0.00 12.99 2.47 4.45 0.00 4.77 5.14 20.05 5.82 0.00 3.12 3.84 70 ER7c ExonRegion 0 2.12 3.48 0.61 1.90 6.76 1.83 8.57 1.96 5.07 3.11 0.00 0.00 8.89 2.86 0.69 0.00 2.17 2.04 7.38 1.29 0.00 1.64 1.08 71 E7_Dc NovelBoundary 0 3.63 9.54 6.71 9.16 0.00 14.20 16.87 18.69 2.78 6.12 0.00 5.55 0.00 0.00 0.00 3.76 0.00 11.77 4.71 9.59 0.00 0.00 0.00 72 Ix Intron 0 5.55 13.07 11.85 17.32 10.64 5.85 14.37 9.97 6.16 4.61 0.63 1.30 1.39 2.99 3.13 5.04 13.79 16.59 14.83 14.73 2.89 2.57 8.15 73 Ix_SR1 SilentIntronRegion 0 6.31 14.23 11.36 14.31 10.56 6.07 15.14 10.28 6.57 5.34 0.95 1.14 1.44 3.80 2.66 4.95 15.73 17.18 15.56 15.19 3.10 2.89 7.31 74 Ix_AR1 ActiveIntronRegion 0 4.38 10.86 20.89 26.56 12.83 6.99 12.55 14.03 6.42 2.98 0.00 1.55 2.10 2.33 3.61 7.77 9.71 14.91 11.46 17.16 0.96 1.14 14.41 75 Ix_SR2 SilentIntronRegion 0 3.89 10.90 7.13 20.68 9.43 4.35 13.18 6.11 4.65 3.40 0.00 1.64 0.72 0.80 4.31 3.41 10.36 15.90 14.88 11.57 3.55 2.55 6.52 76 ER8a ExonRegion 0 0.00 0.00 0.00 0.95 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00