Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RPL14 Gene 0 556.85 1891.33 1774.20 1536.50 361.78 617.21 553.02 455.05 150.53 342.25 898.26 667.55 731.80 892.87 1482.34 981.70 675.75 344.30 1079.90 462.39 710.74 770.27 590.25 2 338970 Transcript 0 1.50 8.05 2.14 2.73 3.68 1.38 4.19 0.79 1.24 0.86 0.48 0.00 0.00 3.11 4.71 2.60 0.00 5.77 1.73 3.72 0.73 1.04 2.94 3 465325 Transcript 0 5.98 5.64 12.75 7.36 4.15 0.76 4.49 5.54 3.30 2.16 4.12 5.55 3.22 1.32 4.12 5.19 2.43 3.44 4.72 6.96 2.36 1.70 3.34 4 477056 Transcript 1 20.39 105.80 81.77 105.05 102.03 69.63 137.38 49.02 32.72 29.55 3.17 24.69 14.04 19.59 17.62 4.65 10.77 40.39 98.40 102.82 10.88 13.22 19.35 5 396203 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 416518 Transcript 0 0.00 2.96 13.39 9.62 0.00 0.00 0.00 4.11 1.79 0.00 2.74 0.00 0.00 7.42 4.45 0.00 0.00 0.00 8.28 0.00 2.97 0.00 0.00 7 435633 Transcript 0 5.53 11.21 19.29 48.00 3.36 1.85 4.01 11.38 2.22 3.64 10.03 0.74 3.84 5.53 10.13 2.26 1.87 17.26 18.33 0.76 17.24 11.90 15.92 8 479563 Transcript 1 416.65 1000.67 398.86 390.86 186.35 432.38 449.67 100.62 36.17 80.77 142.76 15.15 31.49 451.16 1027.67 538.59 164.10 29.04 442.31 212.01 117.90 407.77 362.89 9 465280 Transcript 0 5.94 9.70 8.31 5.55 8.88 3.13 7.93 7.63 1.74 3.45 4.55 7.27 3.70 8.76 11.20 17.31 7.64 4.98 9.92 8.19 2.57 2.28 7.97 10 481798 Transcript 0 26.79 70.02 97.45 75.92 23.03 42.95 55.93 30.86 11.64 15.67 28.61 33.53 55.77 18.68 25.29 14.37 28.19 13.82 12.62 11.97 21.50 6.90 3.74 11 461368 Transcript 1 29.63 35.93 171.65 121.41 30.99 23.99 13.57 43.79 19.04 38.99 122.58 49.79 33.61 20.98 26.59 19.81 109.75 32.80 36.90 35.82 118.82 17.02 25.21 12 ER1a ExonRegion 0 3.00 2.88 0.61 0.00 6.02 1.83 4.41 1.58 0.62 0.00 0.97 0.00 0.00 1.35 6.53 2.23 0.00 4.16 0.27 0.00 1.47 0.00 0.00 13 ER1b ExonRegion 1 59.67 99.93 12.42 15.98 43.85 66.42 81.13 13.44 7.99 5.26 87.30 10.10 20.84 69.25 159.81 227.86 67.94 17.45 105.65 38.83 32.93 27.84 41.28 14 E1_Da NovelBoundary 0 265.01 335.47 67.27 114.34 123.77 350.20 120.12 35.16 16.29 19.80 53.43 0.00 0.00 17.19 29.67 42.21 7.39 55.71 151.44 52.60 64.25 42.99 88.52 15 E1a_E2b KnownJunction 1 8363.11 11586.16 2840.62 2669.62 4165.11 6251.74 6225.40 655.05 271.06 634.24 3306.52 397.78 762.94 5914.68 5131.23 5455.75 2962.69 872.59 4975.39 2139.50 2394.00 3676.34 3799.34 16 ER1c ExonRegion 0 131.22 239.96 51.47 40.89 109.71 172.38 206.54 29.38 18.53 12.62 218.42 86.59 173.53 193.27 374.26 540.93 198.05 33.26 270.76 104.25 90.35 77.09 108.66 17 ER1d ExonRegion 1 1135.06 1848.38 649.88 632.67 636.45 1104.86 1072.88 181.49 79.40 174.41 697.91 120.30 279.06 1517.86 2208.48 1288.20 721.95 81.04 996.11 481.46 544.47 735.04 674.59 18 ER1e ExonRegion 1 4797.91 8856.69 3138.31 3279.56 2386.17 4835.52 4484.99 799.31 318.11 741.28 1982.30 161.15 394.48 5233.09 9337.20 4402.05 2183.73 318.22 3440.19 1955.08 1643.48 3129.45 2967.97 19 ER1f ExonRegion 0 295.97 494.95 155.16 310.43 144.15 405.60 135.21 103.29 35.73 41.06 85.76 4.91 10.44 56.49 98.25 81.72 38.69 144.01 235.57 93.44 140.30 103.95 180.30 20 E1_Db KnownBoundary 0 0.00 0.00 0.00 8.49 0.00 0.00 0.00 4.76 0.00 0.00 2.26 0.00 0.00 2.47 4.45 0.00 0.00 1.74 0.00 0.00 2.59 0.00 0.00 21 E1b_E2b KnownJunction 0 6.45 55.52 40.06 93.63 3.14 31.12 5.79 36.93 16.12 9.59 12.16 0.00 13.47 14.77 5.81 11.96 3.83 9.58 8.66 21.22 54.36 14.02 19.38 22 ER1g ExonRegion 0 3.94 8.27 15.62 21.08 3.50 3.71 4.04 7.43 1.76 2.72 10.22 1.47 1.19 5.64 15.81 4.53 3.74 10.86 14.46 1.51 13.23 12.34 7.77 23 E1c_E2b KnownJunction 0 7.11 14.14 22.97 74.92 3.23 0.00 3.97 15.32 2.69 4.57 9.84 0.00 6.49 5.42 4.45 0.00 0.00 23.67 22.21 0.00 21.25 11.45 24.07 24 ER2a ExonRegion 1 416.65 1000.67 398.86 390.86 186.35 432.38 449.67 100.62 36.17 80.77 142.76 15.15 31.49 451.16 1027.67 538.59 164.10 29.04 442.31 212.01 117.90 407.77 362.89 25 ER2b ExonRegion 1 5746.34 13897.48 5547.25 5442.00 2600.83 6025.86 6279.55 1368.94 498.99 1126.26 1996.68 186.17 445.55 6236.62 14239.35 7418.43 2247.91 395.42 6045.82 2936.16 1654.99 5600.50 4998.17 26 ER2c ExonRegion 1 5557.61 14954.00 7036.98 7027.33 2708.97 6799.64 7000.30 1697.43 627.89 1420.71 1983.58 117.42 310.80 6398.83 13427.85 8241.27 2585.00 501.37 6522.46 3389.51 1695.51 6505.61 5415.96 27 E2_Ad KnownBoundary 1 2684.40 9087.20 11378.72 11457.35 2137.61 4534.89 4519.92 2661.19 963.88 2158.65 1279.48 212.77 643.79 3065.00 4438.73 5244.27 2248.99 902.27 3953.71 2382.51 1132.44 4374.89 3045.67 28 ER2d ExonRegion 1 448.81 1819.92 5070.23 4827.92 613.06 1250.81 1082.30 1189.41 438.82 990.23 1042.55 173.62 189.83 656.45 984.11 1289.60 1129.58 406.19 1270.69 793.47 932.28 939.56 849.88 29 E2_Da KnownBoundary 0 3.70 0.00 32.82 4.66 0.00 0.00 3.80 6.33 0.00 1.67 5.16 0.00 0.00 0.00 0.00 7.35 0.00 2.45 9.60 12.40 0.00 0.00 0.00 30 E2a_E3b KnownJunction 1 623.96 723.69 2436.82 1841.32 545.25 338.73 230.71 508.09 219.67 447.39 1467.74 563.58 489.74 277.83 374.93 287.87 1261.15 428.79 540.06 470.43 1344.09 240.22 382.43 31 ER2e ExonRegion 0 5.98 5.64 12.75 7.36 4.15 0.76 4.49 5.54 3.30 2.16 4.12 5.55 3.22 1.32 4.12 5.19 2.43 3.44 4.72 6.96 2.36 1.70 3.34 32 ER3a ExonRegion 0 29.63 35.93 171.65 121.41 30.99 23.99 13.57 43.79 19.04 38.99 122.58 49.79 33.61 20.98 26.59 19.81 109.75 32.80 36.90 35.82 118.82 17.02 25.21 33 ER3b ExonRegion 0 1324.26 3769.65 7013.42 6457.28 414.85 503.28 289.95 1771.30 616.95 1373.95 3055.30 1155.05 1251.54 4344.10 6707.91 5375.60 2902.75 1901.16 6059.31 1895.87 2405.98 3786.77 3360.83 34 E3_Da KnownBoundary 0 2.74 20.85 7.13 14.88 20.71 10.45 8.39 6.33 2.95 5.91 7.48 30.91 6.33 9.89 4.45 37.43 9.54 1.95 17.60 9.59 8.59 6.25 15.54 35 E3a_E4a KnownJunction 1 3776.30 16541.99 15846.93 15381.33 1380.65 2171.99 1514.43 3789.74 1273.37 2706.80 6731.34 3412.11 3458.21 12824.42 27241.56 18974.51 5852.26 4818.54 19847.91 5710.43 5470.82 11739.63 10646.66 36 ER3c ExonRegion 0 5.94 9.70 8.31 5.55 8.88 3.13 7.93 7.63 1.74 3.45 4.55 7.27 3.70 8.76 11.20 17.31 7.64 4.98 9.92 8.19 2.57 2.28 7.97 37 E3_Db NovelBoundary 0 1335.42 1885.98 2771.40 3430.97 1236.76 1171.14 2608.12 3110.00 2877.89 2898.54 650.69 370.17 435.52 409.15 654.92 1843.28 1674.99 3476.16 1481.08 2316.36 1269.65 631.68 1469.36 38 ER4a ExonRegion 0 2501.82 11405.46 11342.67 11195.99 1262.99 2217.78 1448.95 2815.25 991.86 1925.19 5649.92 2157.09 2059.07 5140.97 10766.50 11191.35 3908.93 3943.94 8284.04 3134.06 4039.26 4681.86 5824.60 39 E4_Da KnownBoundary 1 2069.70 7809.66 8361.00 7761.02 2373.69 2332.29 1236.86 1996.32 760.03 1423.01 3035.03 616.85 632.91 203.01 356.88 757.49 2018.51 2072.88 663.36 666.78 2028.34 339.11 432.11 40 ER4b ExonRegion 1 1612.61 5999.79 7054.77 5685.54 1113.93 2911.21 2019.11 1725.53 653.38 1357.68 1621.38 1247.85 2605.96 113.91 286.18 296.22 1206.57 1102.80 269.69 395.15 1498.03 122.81 197.90 41 E4_Db KnownBoundary 0 26.08 14.87 20.90 15.92 4.33 0.00 10.64 8.63 5.56 1.58 20.06 0.00 0.00 16.95 0.00 10.77 17.58 4.68 3.86 3.26 0.00 12.19 0.00 42 E4b_E4b KnownJunction 1 1897.60 7200.63 7183.10 5189.32 2717.83 4594.80 4154.25 1708.56 656.68 1379.98 2140.65 3494.94 6286.44 207.02 693.00 461.76 1630.29 825.01 729.81 636.81 2080.79 299.31 413.07 43 ER4c ExonRegion 0 26.79 70.02 97.45 75.92 23.03 42.95 55.93 30.86 11.64 15.67 28.61 33.53 55.77 18.68 25.29 14.37 28.19 13.82 12.62 11.97 21.50 6.90 3.74 44 E4_Ab KnownBoundary 0 57.49 4.93 7.48 17.18 34.72 9.54 11.97 11.17 0.00 1.32 11.37 6.00 15.58 9.65 13.35 6.84 16.08 4.02 13.65 5.75 0.00 5.45 0.00 45 ER4d ExonRegion 0 1596.21 16045.13 12755.88 10281.40 5657.08 9354.80 9287.61 3177.06 980.96 2242.76 7316.86 6896.51 7999.16 5647.86 8657.94 4083.59 4788.67 1826.13 5828.13 2533.87 5353.72 3658.70 2548.45 46 E4c_E5a KnownJunction 0 3168.56 31379.67 16240.56 13848.26 3681.33 6134.14 6592.03 4025.91 1136.59 2636.42 12629.09 8858.89 8418.44 10298.01 16507.86 6344.66 7680.78 2189.86 9475.28 4089.04 8267.66 5908.11 3851.75 47 E4c_E5b KnownJunction 0 0.00 2.96 13.39 9.62 0.00 0.00 0.00 4.11 1.79 0.00 2.74 0.00 0.00 7.42 4.45 0.00 0.00 0.00 8.28 0.00 2.97 0.00 0.00 48 E4c_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER5a ExonRegion 0 3882.40 25652.92 15427.42 13838.28 5128.52 7530.19 7494.06 3992.73 1158.95 2667.70 11906.66 8485.75 8207.56 9615.87 13640.72 6336.57 7418.21 2386.68 9155.80 3801.41 7707.84 5833.16 3827.42 50 ER5b ExonRegion 0 2052.81 5491.01 5923.66 4780.31 684.54 863.14 712.90 1519.60 412.22 1169.66 3508.56 4049.05 4331.50 3425.66 5243.95 2374.90 2445.60 784.98 3479.45 1440.05 2852.81 3081.73 1355.64 51 E5_Da KnownBoundary 0 1869.22 6765.77 4426.72 2888.94 627.84 800.11 740.87 1303.77 338.45 1156.08 3876.61 3884.62 3627.36 1890.47 3905.81 1646.41 2253.01 506.48 4037.20 1514.01 3014.12 4043.55 1015.39 52 ER5c ExonRegion 0 2387.84 7058.84 4870.85 2911.99 855.12 928.72 639.55 1135.79 294.13 1021.00 2935.21 3553.41 2920.85 2045.40 3019.56 1371.06 1741.68 643.07 2781.00 1205.31 2374.68 2350.33 903.83 53 E5_Db KnownBoundary 0 5423.63 10917.53 3938.74 2532.64 1695.76 1358.20 897.74 741.06 206.71 601.84 2411.08 3083.05 2629.37 1694.10 2011.13 1544.64 1560.63 1030.24 2736.83 1007.02 1867.72 1532.61 1087.95 54 ER5d ExonRegion 1 1366.17 3734.72 2113.60 1310.69 465.27 778.28 580.96 558.26 175.21 438.36 2008.97 980.66 1102.24 965.36 1052.82 572.16 1360.74 433.30 883.03 517.36 1685.64 575.13 390.31 55 E5_Dc KnownBoundary 0 61.71 299.16 341.68 294.20 51.61 53.72 67.48 191.36 79.63 141.16 213.32 233.48 274.49 287.89 268.87 147.23 91.35 191.14 553.52 206.90 157.47 176.84 126.93 56 ER5e ExonRegion 0 76.56 244.10 200.33 168.24 50.87 93.32 84.90 112.92 57.76 76.52 184.88 121.27 171.45 239.23 294.28 132.46 152.82 136.52 346.99 155.15 134.88 92.62 103.75 57 ER5f ExonRegion 0 0.00 13.22 3.68 5.45 1.34 0.92 3.97 0.00 1.85 1.72 0.00 0.00 0.00 4.87 2.90 2.97 0.00 7.39 3.19 7.45 0.00 2.08 5.87 58 Ix Intron 0 30.64 106.93 128.84 166.09 105.75 109.70 147.94 84.44 56.96 53.47 5.47 36.44 21.48 28.45 22.52 13.11 13.46 70.00 131.71 155.96 12.28 18.90 29.32 59 Ix_SR2 SilentIntronRegion 0 31.12 108.27 130.66 168.44 107.27 110.92 149.87 85.57 57.78 54.22 5.56 37.05 21.83 28.89 22.81 13.32 13.66 70.90 133.54 158.05 12.46 19.16 29.66 60 E6_Aa NovelBoundary 0 77.05 240.88 347.65 468.24 252.72 162.24 297.17 159.70 151.39 92.62 4.74 92.88 31.98 69.16 26.82 20.08 48.71 84.23 171.30 265.58 19.09 33.13 40.04 61 ER6a ExonRegion 0 40.77 211.59 163.54 210.10 204.06 139.25 274.76 98.03 65.45 59.11 6.35 49.38 28.07 39.18 35.24 9.29 21.54 80.78 196.81 205.63 21.77 26.44 38.71