Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C3orf62 Gene 0 45.97 38.33 38.27 32.67 44.68 30.74 36.71 56.20 29.08 26.42 34.88 22.43 25.09 30.86 38.47 42.61 36.86 36.15 27.61 45.86 23.14 23.09 23.68 2 343010 Transcript 0 48.28 36.54 33.08 37.00 41.20 38.17 30.28 54.07 25.22 32.65 45.33 19.27 26.52 44.76 41.88 59.79 56.20 41.93 32.69 44.14 27.08 29.47 29.74 3 436325 Transcript 0 3.78 0.00 1.42 3.26 0.00 2.84 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 2.36 0.00 0.00 2.97 0.00 0.00 4 424960 Transcript 0 0.00 2.50 0.00 0.00 7.89 0.00 0.00 4.15 1.79 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 5.50 0.00 0.00 5 479673 Transcript 0 19.40 16.88 15.58 14.98 23.23 7.19 21.14 22.40 11.05 10.62 6.83 9.27 8.86 8.34 7.63 11.72 6.64 11.44 9.30 17.07 6.53 11.79 7.14 6 ER1a ExonRegion 0 63.41 52.45 45.35 53.04 59.48 48.73 41.52 79.17 33.82 44.41 61.11 36.01 45.01 65.42 56.11 87.01 89.42 54.39 51.08 55.18 37.70 43.35 41.24 7 E1_Ab KnownBoundary 0 13.78 6.51 8.57 5.73 10.95 15.90 5.83 9.73 5.18 8.62 19.48 11.85 6.82 16.48 0.00 4.10 8.04 19.15 3.76 26.01 26.38 0.00 3.33 8 ER1b ExonRegion 1 13.92 5.42 11.07 5.58 18.89 10.95 9.31 12.99 9.96 11.47 10.95 2.49 5.83 40.95 3.87 16.93 13.20 25.42 12.64 18.12 21.84 0.25 13.88 9 E1_Da KnownBoundary 0 23.41 12.56 10.79 3.93 19.52 5.28 14.53 14.33 12.79 13.14 10.16 0.00 6.82 30.02 0.00 22.99 17.77 19.19 13.55 24.42 11.86 0.00 21.08 10 E1a_E1d KnownJunction 0 3.78 0.00 1.42 3.26 0.00 2.84 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 2.36 0.00 0.00 2.97 0.00 0.00 11 ER1c ExonRegion 0 33.15 20.63 20.81 20.95 22.93 27.61 19.05 28.97 16.62 20.90 29.55 2.53 8.03 24.10 27.64 32.57 22.99 29.47 14.31 33.09 16.46 15.58 18.25 12 E1_Ac KnownBoundary 0 55.05 20.06 13.10 23.27 3.48 26.01 18.90 17.05 16.72 12.63 24.43 0.00 6.66 9.24 14.71 7.26 8.32 22.09 22.02 18.86 5.44 7.78 15.54 13 E1_Ad KnownBoundary 0 31.56 8.49 15.85 28.27 22.58 15.62 7.77 32.37 12.99 22.30 12.32 6.00 0.00 2.47 10.63 30.33 34.13 22.51 0.00 24.10 16.99 2.33 15.96 14 ER1d ExonRegion 0 76.19 36.60 37.99 55.88 40.14 47.68 25.16 57.04 34.58 36.70 38.66 17.32 18.76 34.11 37.72 56.47 52.81 57.28 31.85 59.57 26.44 16.67 35.24 15 ER1e ExonRegion 0 39.00 28.01 17.84 20.85 21.19 42.69 27.91 28.54 14.71 16.33 7.26 6.85 15.19 16.24 18.63 22.36 17.23 25.92 12.31 21.81 8.52 9.70 11.64 16 E1_Db KnownBoundary 0 67.12 59.92 26.76 13.62 39.22 85.06 70.26 26.74 23.09 8.97 19.90 13.20 0.00 23.37 19.53 41.36 23.00 17.99 17.22 11.89 11.98 12.31 13.06 17 E1b_E2b KnownJunction 0 0.00 2.50 0.00 0.00 7.89 0.00 0.00 4.15 1.79 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 5.50 0.00 0.00 18 ER1f ExonRegion 0 74.25 32.69 31.98 24.88 41.48 34.14 35.05 56.04 29.70 23.79 51.92 16.56 19.17 31.81 17.49 43.44 30.68 17.78 15.52 27.07 11.03 20.09 12.46 19 E1_Dc NovelBoundary 0 75.72 5.79 34.21 4.73 7.30 2.90 36.96 16.10 11.17 7.33 4.69 0.00 13.64 2.41 0.00 7.78 9.54 5.72 4.80 11.44 14.52 17.82 11.95 20 E1c_E2b KnownJunction 0 79.27 30.19 62.51 63.30 96.01 61.61 59.58 107.45 59.84 47.20 105.82 73.67 81.00 53.27 71.70 93.65 83.78 43.03 54.40 67.56 24.22 38.94 31.16 21 I1 Intron 0 3.97 2.29 5.47 2.28 11.04 6.19 4.47 6.77 4.83 5.13 2.90 0.00 2.90 4.37 4.93 7.80 6.19 3.79 8.36 4.79 7.44 0.00 11.01 22 I1_SR1 SilentIntronRegion 0 3.97 2.29 5.47 2.28 11.04 6.19 4.47 6.77 4.83 5.13 2.90 0.00 2.90 4.37 4.93 7.80 6.19 3.79 8.36 4.79 7.44 0.00 11.01 23 ER2a ExonRegion 0 12.08 10.13 6.94 6.56 10.38 1.09 14.41 9.27 8.15 4.43 2.53 3.91 9.26 5.52 6.54 6.61 5.36 8.92 9.85 10.69 7.38 9.20 7.97 24 E2_Ab KnownBoundary 1 6.15 13.22 15.32 6.53 11.29 0.00 5.70 8.09 17.74 10.05 2.11 0.00 27.76 0.00 4.33 25.72 3.74 11.32 4.42 26.72 16.37 2.33 7.68 25 ER2b ExonRegion 0 82.27 47.55 60.95 53.03 89.30 60.23 52.20 88.51 55.19 49.53 94.61 34.21 44.27 60.56 51.46 93.28 61.85 45.50 36.33 71.01 22.88 31.32 18.33 26 E2_Da NovelBoundary 0 12.97 3.22 7.33 5.23 8.15 0.00 10.78 9.86 4.69 1.50 0.00 0.00 0.00 0.00 4.82 7.86 0.00 10.32 16.09 8.37 16.87 2.76 4.35 27 E2a_E3a KnownJunction 0 81.20 79.20 57.30 57.47 116.38 65.42 56.97 89.79 54.46 44.19 102.18 24.16 25.81 45.85 66.26 84.93 65.08 29.80 18.07 62.57 8.53 23.09 7.68 28 I2_SR1 SilentIntronRegion 0 9.06 6.44 5.68 6.43 9.81 3.36 9.78 5.44 3.07 4.56 2.36 1.71 4.78 2.02 5.50 4.95 5.68 5.26 7.09 10.05 7.47 3.36 7.18 29 E3_Aa NovelBoundary 0 28.60 2.57 8.10 9.49 16.13 11.81 30.69 0.00 14.99 11.52 5.37 5.85 13.64 0.00 10.01 8.54 11.87 11.07 0.00 15.85 9.39 5.14 0.00 30 ER3a ExonRegion 0 79.26 85.61 56.18 58.94 94.92 76.52 76.79 105.44 55.95 45.13 98.00 37.02 37.29 63.38 64.19 75.42 83.84 37.65 24.05 53.14 22.31 30.68 14.68 31 E3_Da KnownBoundary 0 116.24 103.93 76.90 70.35 103.99 104.20 119.33 137.60 61.86 58.51 95.39 58.37 37.01 62.16 71.82 80.49 113.04 46.43 45.65 60.91 36.82 54.31 26.55 32 ER3b ExonRegion 0 77.55 66.49 54.31 66.78 87.71 50.40 68.15 107.97 58.65 44.19 98.52 50.08 54.99 61.90 79.81 81.23 64.72 58.68 35.68 85.71 35.98 37.43 27.69 33 E3_Db KnownBoundary 0 124.39 89.72 44.06 66.16 39.13 74.62 75.83 102.56 68.95 41.74 110.82 42.61 33.44 57.45 91.60 62.46 102.10 42.37 20.52 86.48 45.72 25.60 46.18 34 ER3c ExonRegion 0 44.70 40.98 45.43 31.55 46.80 27.45 39.73 60.00 31.95 25.19 28.90 24.34 23.95 24.73 42.00 36.00 29.96 38.14 28.81 52.21 25.14 21.63 25.48 35 E3_Dc KnownBoundary 0 16.15 22.63 26.91 26.64 22.41 26.23 29.63 50.81 14.06 21.54 9.32 13.95 0.00 9.65 17.92 19.40 8.70 10.78 17.60 49.34 13.84 8.57 3.50 36 ER3d ExonRegion 0 26.72 23.64 24.21 23.40 36.08 13.30 27.88 35.54 13.95 16.80 11.12 14.64 8.46 11.16 8.72 16.83 7.93 13.97 8.74 23.44 5.68 14.38 6.30 37 IG42 Intergenic 0 6.02 4.44 7.83 3.36 10.22 2.77 10.16 5.00 3.55 3.40 0.74 1.67 4.86 0.80 1.39 4.39 3.60 4.93 4.04 5.40 7.50 3.58 5.70 38 IG42_AR5 ActiveIntergenicRegion 0 10.47 6.62 9.72 3.17 12.12 2.22 10.23 6.31 6.07 3.83 1.08 1.64 4.40 0.30 1.85 4.50 4.31 7.61 5.32 5.18 9.84 3.76 5.18 39 IG42_SR4 SilentIntergenicRegion 0 16.42 8.77 12.81 6.54 8.94 1.10 16.08 7.56 6.63 6.54 1.30 5.20 12.53 3.20 2.65 11.85 6.46 7.21 4.91 10.85 8.85 8.16 8.73 40 IG42_AR4 ActiveIntergenicRegion 0 9.54 7.32 11.59 4.95 16.10 4.76 17.52 6.99 4.70 6.20 1.09 1.61 13.81 1.75 1.48 6.73 6.00 4.80 5.10 5.80 10.37 5.89 7.87 41 IG42_AR3 ActiveIntergenicRegion 0 9.00 3.02 9.31 6.47 19.90 5.46 23.07 9.30 5.87 2.91 0.41 1.52 7.50 0.28 0.51 4.42 2.81 1.96 6.09 4.07 11.71 3.10 10.61