Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF197 Gene 0 29.41 65.27 28.77 51.97 51.26 39.31 56.50 37.91 27.63 37.50 38.65 22.04 32.96 35.22 25.38 26.95 43.14 44.50 34.83 32.77 26.05 25.94 22.91 2 412641 Transcript 1 0.95 2.89 2.10 2.92 2.06 3.35 3.48 1.70 2.37 3.68 0.00 0.00 0.41 0.57 0.34 0.32 12.76 14.77 11.51 5.66 4.06 1.85 2.87 3 383744 Transcript 0 0.87 0.65 1.23 0.00 0.00 1.08 2.05 0.08 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.62 0.90 1.93 0.72 0.68 0.10 1.42 0.67 4 344387 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 383745 Transcript 0 29.71 52.38 26.72 37.13 38.57 20.46 29.05 30.93 19.55 24.30 6.92 8.46 11.02 7.96 14.59 6.34 6.33 5.73 11.49 11.69 1.88 10.01 3.54 6 334075 Transcript 0 8.58 8.08 6.05 24.24 11.03 9.73 7.96 7.04 9.30 12.65 8.41 0.91 2.86 9.02 6.07 11.81 11.53 36.72 7.79 6.25 14.35 7.82 11.31 7 396058 Transcript 0 16.29 26.40 11.28 22.31 21.01 17.23 30.70 14.86 14.73 17.01 17.78 12.81 16.68 22.92 14.76 17.66 23.47 23.74 20.11 22.74 13.25 13.00 14.24 8 ER1a ExonRegion 1 1.45 8.08 4.92 3.85 5.37 11.63 9.31 2.75 2.56 7.12 0.00 0.00 1.64 2.27 0.00 1.26 19.64 30.44 24.47 6.10 6.26 1.74 9.03 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 1 2.37 3.47 1.73 5.75 2.85 1.78 4.62 2.06 3.77 4.66 0.00 0.00 0.00 0.00 1.36 0.03 23.44 13.26 17.91 5.66 4.65 3.15 2.45 11 E2a_E4c KnownJunction 0 0.00 0.00 1.74 2.06 0.00 0.00 0.00 1.97 3.12 2.93 0.00 0.00 0.00 0.00 0.00 0.00 7.95 15.38 3.67 10.87 5.31 2.51 0.00 12 Ix Intron 0 5.55 13.07 11.85 17.32 10.64 5.85 14.37 9.97 6.16 4.61 0.63 1.30 1.39 2.99 3.13 5.04 13.79 16.59 14.83 14.73 2.89 2.57 8.15 13 Ix_SR1 SilentIntronRegion 0 6.31 14.23 11.36 14.31 10.56 6.07 15.14 10.28 6.57 5.34 0.95 1.14 1.44 3.80 2.66 4.95 15.73 17.18 15.56 15.19 3.10 2.89 7.31 14 Ix_AR1 ActiveIntronRegion 0 4.38 10.86 20.89 26.56 12.83 6.99 12.55 14.03 6.42 2.98 0.00 1.55 2.10 2.33 3.61 7.77 9.71 14.91 11.46 17.16 0.96 1.14 14.41 15 Ix_SR2 SilentIntronRegion 0 3.89 10.90 7.13 20.68 9.43 4.35 13.18 6.11 4.65 3.40 0.00 1.64 0.72 0.80 4.31 3.41 10.36 15.90 14.88 11.57 3.55 2.55 6.52 16 Ix Intron 0 4.23 17.18 5.92 16.32 8.07 2.84 14.68 5.25 4.65 4.06 0.22 0.54 1.34 0.70 2.00 2.24 5.48 11.27 10.45 9.79 2.16 0.94 6.09 17 Ix_SR1 SilentIntronRegion 0 4.24 17.21 5.93 16.34 8.09 2.84 14.70 5.25 4.66 4.07 0.22 0.54 1.34 0.70 2.01 2.25 5.49 11.28 10.47 9.81 2.16 0.94 6.10 18 Ix Intron 0 3.89 15.62 5.16 15.34 6.39 4.05 11.28 9.76 7.05 6.94 0.35 0.73 0.71 0.63 1.28 1.99 5.00 16.36 13.63 10.69 2.60 2.28 4.98 19 Ix_SR1 SilentIntronRegion 0 3.54 15.14 4.16 13.66 5.56 3.42 11.36 8.74 7.10 6.90 0.38 0.81 0.79 0.67 1.26 1.95 5.48 16.98 12.91 11.00 2.80 2.49 5.11 20 Ix_AR1 ActiveIntronRegion 0 7.77 22.52 11.43 26.30 8.53 8.19 11.39 16.39 8.99 8.30 0.57 0.56 1.05 0.31 1.79 2.27 2.74 24.08 25.42 12.52 2.48 2.55 7.44 21 Ix_SR2 SilentIntronRegion 0 3.60 14.31 7.24 18.78 10.22 5.23 10.86 11.88 5.49 6.39 0.00 0.36 0.00 0.57 1.11 2.08 3.62 7.68 10.60 7.66 1.54 0.83 2.64 22 ER3a ExonRegion 0 0.87 0.65 1.23 0.00 0.00 1.08 2.05 0.08 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.62 0.90 1.93 0.72 0.68 0.10 1.42 0.67 23 ER3b ExonRegion 0 4.70 4.29 3.40 0.00 0.00 9.37 6.33 1.73 0.00 0.51 1.07 0.00 0.00 8.30 0.00 8.92 3.67 6.36 3.19 6.62 5.63 4.17 2.94 24 ER3c ExonRegion 1 24.39 22.59 11.88 6.81 19.37 72.47 52.64 6.50 5.83 14.41 50.59 0.00 0.00 34.81 19.49 32.43 74.13 26.19 28.46 17.99 64.72 17.39 33.77 25 E3_Ad KnownBoundary 1 28.00 33.15 21.08 15.92 35.91 95.91 108.29 17.00 15.34 29.79 84.44 0.00 0.00 41.09 18.17 45.20 116.78 81.29 50.82 21.09 86.49 25.17 61.12 26 ER3d ExonRegion 0 9.79 7.50 8.76 6.84 7.02 26.82 37.46 4.36 7.80 16.80 19.13 1.71 0.39 13.60 3.63 15.42 39.89 20.17 12.48 12.50 32.87 8.25 22.51 27 E3_Da NovelBoundary 0 0.00 3.03 3.43 1.47 0.00 2.33 6.36 3.98 1.24 0.00 0.00 0.00 0.00 2.30 4.45 0.00 0.00 4.56 17.13 0.00 6.30 2.27 0.00 28 E3a_E4b KnownJunction 0 3.78 0.00 0.00 0.00 0.00 2.78 0.00 0.00 1.79 0.00 0.00 7.50 0.00 0.00 0.00 4.02 0.00 2.40 0.00 0.00 0.00 0.00 0.00 29 E3a_E4c KnownJunction 0 7.26 0.00 0.00 1.53 0.00 0.00 0.00 0.00 1.45 5.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.32 0.00 0.00 0.00 0.00 0.00 30 Ix Intron 0 6.21 12.38 7.47 12.94 6.40 4.99 12.70 10.25 7.33 4.91 4.46 6.90 16.82 6.52 5.39 6.53 10.27 10.66 11.43 9.99 4.98 6.71 5.75 31 Ix_SR1 SilentIntronRegion 0 6.22 12.39 7.47 12.95 6.40 4.99 12.70 10.25 7.33 4.91 4.46 6.90 16.82 6.52 5.39 6.53 10.27 10.66 11.44 10.00 4.99 6.71 5.75 32 E4_Aa NovelBoundary 0 3.11 9.67 1.71 12.02 0.00 2.50 14.26 4.48 6.83 0.00 4.58 6.15 8.28 7.06 0.00 8.72 8.70 22.43 9.60 17.13 7.41 5.45 16.65 33 ER4a ExonRegion 0 8.44 6.75 4.10 9.61 4.63 2.33 7.71 1.33 4.02 2.98 3.32 5.38 3.25 7.77 3.98 4.72 11.72 8.84 6.78 10.94 3.31 2.32 5.16 34 E4_Ab KnownBoundary 0 7.56 5.26 2.78 8.59 4.33 8.23 16.34 1.97 4.34 2.23 4.90 0.00 0.00 2.47 4.82 0.00 18.89 8.62 0.00 2.94 0.00 2.88 0.00 35 E4_Ac KnownBoundary 0 9.41 6.12 5.14 4.33 7.72 0.00 9.67 0.00 3.36 7.12 7.16 0.00 0.00 9.48 0.00 11.71 3.83 5.89 8.56 5.69 3.15 2.39 12.21 36 ER4b ExonRegion 0 15.29 9.72 6.54 14.23 13.38 7.74 17.65 1.92 10.57 9.18 10.31 17.32 10.42 11.91 12.57 21.14 20.91 15.40 12.03 9.93 3.92 2.55 11.75 37 ER4c ExonRegion 1 11.97 22.52 28.55 29.10 19.08 37.25 32.36 21.97 31.09 24.21 61.46 8.71 20.99 46.18 33.69 40.42 70.95 93.87 49.68 41.52 74.93 25.04 35.87 38 E4_Da KnownBoundary 0 25.78 36.51 39.24 35.53 12.48 21.75 31.05 17.05 35.33 26.92 98.08 29.41 35.06 62.28 47.22 44.26 97.52 125.31 58.54 65.00 126.52 50.82 54.46 39 ER4d ExonRegion 1 18.02 26.89 25.92 36.65 12.06 22.59 23.55 22.53 33.13 27.85 78.13 7.79 32.71 62.91 44.16 48.96 74.91 125.11 43.50 47.98 80.26 34.04 34.32 40 E4_Db NovelBoundary 0 0.00 16.90 1.80 19.34 7.98 0.00 4.11 0.00 6.74 4.86 2.11 0.00 0.00 0.00 0.00 0.00 0.00 15.79 4.33 3.26 0.00 0.00 7.51 41 E4b_E5a KnownJunction 0 10.89 5.99 8.04 15.38 7.81 4.77 4.02 4.39 6.83 7.58 6.63 0.00 0.00 4.77 6.30 20.68 4.77 37.97 9.13 3.26 5.75 8.39 0.00 42 E4b_E6a KnownJunction 1 10.15 21.71 21.47 28.53 7.22 20.61 27.38 13.84 29.28 29.33 70.75 0.00 45.29 69.87 21.26 67.76 80.60 85.77 60.33 41.80 64.80 22.35 38.75 43 E5_Aa NovelBoundary 0 9.26 24.01 10.91 11.25 0.00 13.91 8.21 8.42 1.42 6.47 4.47 7.65 6.01 0.00 5.32 7.18 7.67 19.57 14.02 3.26 8.34 0.00 11.01 44 ER5a ExonRegion 0 14.85 18.24 10.11 27.33 13.74 10.85 13.91 14.17 12.33 16.14 14.01 2.73 8.57 10.53 7.46 11.24 21.22 40.84 9.44 12.24 16.06 7.10 14.99 45 E5_Da NovelBoundary 0 20.60 36.70 15.23 14.72 4.24 5.56 12.28 3.86 5.24 2.66 7.48 6.30 0.00 4.59 9.64 7.52 4.39 29.35 17.32 3.26 6.12 0.00 8.37 46 E5a_E6a KnownJunction 0 0.00 0.00 0.00 30.00 11.54 13.57 5.96 2.55 8.74 14.24 4.58 0.00 0.00 11.77 4.45 3.50 8.60 31.34 4.80 3.26 21.25 7.96 18.95 47 Ix Intron 0 13.14 10.82 8.10 7.21 3.56 8.13 4.11 2.28 4.08 3.79 5.14 0.00 1.71 4.83 4.01 6.59 4.39 17.51 8.48 10.38 2.93 7.39 7.81 48 Ix_SR1 SilentIntronRegion 0 14.82 12.10 8.96 7.79 4.01 9.17 4.45 2.58 4.48 3.92 5.59 0.00 1.93 5.24 4.52 7.43 4.95 19.49 9.52 11.68 3.31 8.17 8.75 49 E6_Aa NovelBoundary 0 21.56 29.67 9.28 19.08 8.15 4.43 18.90 6.94 13.05 9.83 12.63 0.00 0.00 4.59 0.00 12.99 4.21 22.88 3.58 6.07 0.00 2.69 0.00 50 ER6a ExonRegion 1 26.42 37.34 35.08 54.61 26.41 52.40 47.72 26.80 35.49 38.11 93.00 13.29 36.35 71.86 38.57 57.32 80.56 182.22 67.01 56.49 104.95 44.86 58.22 51 E6_Da NovelBoundary 0 0.00 5.39 14.52 34.59 0.00 19.14 6.09 28.83 13.37 13.48 16.37 0.00 5.84 11.95 9.64 11.02 9.07 68.27 39.15 9.01 14.02 5.02 16.73 52 E6a_E7a KnownJunction 0 33.34 28.48 29.18 49.28 29.54 32.59 46.59 17.17 30.27 30.06 61.33 25.06 18.51 76.40 40.05 81.77 78.35 105.33 47.44 35.54 102.12 37.66 43.88 53 E6a_E8a NovelJunction 0 7.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 4.97 4.74 0.00 6.82 10.42 4.45 8.03 3.83 0.00 9.41 3.26 0.00 5.20 0.00 54 Ix Intron 0 17.80 14.97 5.76 5.70 7.03 14.14 15.08 8.13 4.52 3.89 6.10 0.00 3.53 4.76 3.29 12.50 12.15 23.51 12.28 4.85 4.25 2.56 4.12 55 Ix_AR1 ActiveIntronRegion 0 24.37 22.30 7.01 6.68 8.80 15.08 16.70 12.71 5.55 5.15 9.01 0.00 4.46 6.34 4.02 15.48 15.39 32.00 17.47 6.42 5.44 3.42 4.03 56 E7_Aa NovelBoundary 0 10.08 30.13 13.72 15.62 0.00 11.81 10.95 6.33 8.80 9.11 6.26 0.00 0.00 4.77 18.79 14.78 13.00 49.45 23.25 18.09 8.09 0.00 6.83 57 ER7a ExonRegion 1 15.74 42.66 22.84 56.60 27.25 42.34 40.86 32.93 32.03 26.43 85.93 15.01 34.36 74.76 41.72 56.79 96.55 119.62 55.47 45.95 102.52 35.67 65.21 58 E7_Da NovelBoundary 0 17.63 3.09 2.63 21.71 7.98 0.00 13.20 6.82 0.00 5.67 4.32 0.00 0.00 2.41 4.33 12.56 9.44 18.86 0.00 6.46 8.22 5.02 15.28 59 E7a_E8a KnownJunction 0 21.86 29.27 15.11 41.12 11.38 25.50 31.49 16.10 14.09 31.40 54.59 19.21 35.39 72.16 42.77 62.55 86.49 96.67 62.12 46.66 88.09 48.50 65.13 60 Ix Intron 0 4.69 9.39 5.06 10.88 4.45 4.74 8.56 4.28 0.34 4.42 2.86 0.66 1.43 3.74 3.19 3.84 3.05 14.96 4.71 6.29 4.89 2.31 3.80 61 Ix_AR1 ActiveIntronRegion 0 4.72 9.46 5.10 10.96 4.48 4.78 8.63 4.31 0.34 4.45 2.88 0.66 1.44 3.77 3.21 3.87 3.07 15.07 4.74 6.34 4.92 2.33 3.83 62 E8_Aa NovelBoundary 0 3.26 15.06 8.22 14.88 4.16 2.67 13.96 5.67 1.39 4.84 7.74 0.00 0.00 7.42 4.70 4.36 0.00 23.34 3.86 2.43 3.03 8.39 8.37 63 ER8a ExonRegion 0 18.10 55.15 26.79 39.82 29.90 40.16 50.92 39.51 27.43 40.48 90.25 27.37 43.21 77.23 47.93 52.84 95.83 119.16 52.82 52.96 70.66 40.39 51.98 64 E8_Da NovelBoundary 0 13.34 9.34 0.00 9.19 0.00 6.64 12.72 5.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.30 0.00 2.57 4.42 5.50 0.00 0.00 4.01 65 E8a_E9a KnownJunction 0 17.63 42.10 38.88 40.72 28.27 24.13 60.86 39.84 28.53 38.92 65.12 18.46 46.75 89.12 66.38 50.50 80.50 80.17 48.66 54.27 43.43 22.72 28.68 66 E8a_E10a KnownJunction 0 7.56 21.71 10.76 3.33 12.90 39.41 19.17 18.57 6.08 18.21 2.05 0.00 0.00 6.83 4.45 4.36 8.32 9.12 14.97 0.00 15.01 5.27 10.93 67 ER9a ExonRegion 0 19.56 44.12 20.55 43.09 42.24 41.55 59.34 34.47 27.41 37.79 49.03 32.84 45.34 44.48 21.20 34.94 56.32 46.33 40.38 39.92 24.45 33.28 29.03 68 E9_Da KnownBoundary 1 47.19 49.27 38.88 96.03 131.66 67.63 220.24 64.28 49.45 43.81 42.43 39.31 124.99 51.74 62.18 38.02 52.27 43.94 77.56 52.48 14.76 53.15 27.66 69 ER9b ExonRegion 0 24.14 46.05 18.47 35.01 37.39 32.12 53.69 28.38 25.43 31.03 32.24 20.24 30.12 38.07 25.53 30.59 35.23 38.63 33.43 34.54 23.19 23.67 23.32 70 E9_Db NovelBoundary 1 13.63 71.90 19.51 58.97 61.12 33.22 69.34 42.43 14.29 37.47 19.58 24.31 54.87 21.90 24.11 18.11 16.83 22.34 34.64 45.19 10.81 25.96 3.67 71 Ix Intron 0 17.01 62.55 16.05 37.81 45.03 26.73 50.22 30.53 22.99 33.40 15.65 16.21 25.96 23.08 11.12 17.53 19.09 29.08 23.39 21.89 6.37 14.70 10.36 72 Ix_SR1 SilentIntronRegion 0 12.42 64.47 14.68 39.57 40.70 33.25 53.16 30.11 19.24 37.56 12.51 23.00 41.43 20.22 8.85 13.87 13.11 14.53 17.92 23.02 2.36 18.08 10.04 73 Ix_AR1 ActiveIntronRegion 0 19.76 66.10 17.61 39.74 49.57 26.26 52.58 32.74 25.84 34.20 17.79 14.93 21.68 25.52 12.47 19.98 22.45 36.11 26.87 22.98 8.20 14.51 11.17 74 E10_Aa NovelBoundary 0 40.45 128.60 21.32 69.06 95.25 69.79 104.31 52.53 27.81 71.29 20.01 24.91 46.10 16.54 29.05 14.01 30.76 17.82 44.05 36.37 4.88 16.66 8.71 75 ER10a ExonRegion 0 51.40 151.34 52.00 104.11 106.51 54.52 83.59 62.46 30.86 55.64 28.31 30.15 37.38 23.32 30.57 14.02 29.09 24.45 29.16 25.07 11.80 23.10 11.08 76 E10_Da KnownBoundary 1 68.23 91.89 38.02 131.65 57.13 34.64 75.08 60.83 30.56 44.56 35.17 0.00 13.64 0.00 38.45 6.49 12.62 24.04 29.55 31.89 5.25 12.19 0.00 77 ER10b ExonRegion 1 67.23 113.88 37.78 65.80 93.12 50.08 85.24 54.53 33.78 46.26 17.03 10.05 19.77 12.93 31.25 11.64 15.03 16.04 29.18 20.32 4.62 16.91 7.78 78 E10_Db KnownBoundary 0 90.16 111.03 33.62 70.95 96.35 70.13 109.88 56.68 48.26 43.44 9.42 12.00 6.82 17.01 32.26 11.19 16.92 14.38 35.86 38.09 2.59 16.17 8.02 79 ER10c ExonRegion 0 55.65 104.76 53.44 74.26 77.14 38.14 58.11 61.85 37.31 48.60 13.85 9.41 22.04 15.93 29.18 8.66 12.66 9.07 22.99 23.39 3.76 20.01 7.08