Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	KLHDC8B	Gene	0	27.97	18.55	88.62	34.76	48.51	58.25	29.89	116.90	59.38	123.05	0.77	1.95	0.90	3.76	4.53	1.12	1.71	49.44	119.62	71.29	53.77	31.94	31.28
2	445277	Transcript	0	0.00	0.65	1.18	0.49	0.86	0.79	0.57	0.25	0.57	0.08	0.00	0.00	0.00	0.17	0.93	0.00	0.00	0.13	1.48	0.38	0.55	0.00	1.05
3	332780	Transcript	0	53.35	14.01	36.25	17.15	28.13	19.57	12.24	52.51	23.11	35.62	0.00	2.69	0.00	1.84	0.00	0.00	0.00	15.05	56.37	24.81	13.97	8.23	6.95
4	459846	Transcript	0	0.00	0.00	7.33	0.00	0.00	0.00	0.00	2.55	0.00	3.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	476495	Transcript	0	1.69	1.48	2.00	0.00	1.07	3.70	0.04	6.07	3.84	6.07	0.00	0.07	0.00	1.22	2.42	0.00	0.00	15.19	10.85	3.94	0.51	4.72	0.00
6	471811	Transcript	0	3.25	2.23	15.96	1.64	8.87	8.70	3.49	17.29	7.12	13.57	0.33	0.03	0.00	1.26	0.09	0.01	0.02	13.27	16.43	11.11	6.99	1.30	2.81
7	462582	Transcript	0	0.00	3.22	12.48	1.73	4.33	0.00	0.00	0.00	0.00	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	0.00	1.31	0.00	0.97	1.72	1.57	1.13	0.49	1.15	0.16	0.00	0.00	0.00	0.35	1.87	0.00	0.00	0.26	2.96	0.76	1.10	0.00	2.10
9	ER1b	ExonRegion	0	3.66	3.14	2.90	2.85	6.81	18.00	5.54	4.87	2.58	3.23	0.00	0.00	0.00	1.62	2.90	2.43	0.00	2.69	28.38	8.70	11.62	15.91	8.01
10	ER1c	ExonRegion	0	18.14	16.88	19.63	5.58	56.06	114.86	62.65	12.68	8.43	30.40	0.00	0.00	0.00	4.20	2.39	1.98	0.00	7.57	224.34	86.86	47.40	42.83	55.00
11	E1a_E2a	KnownJunction	0	0.00	2.83	20.46	7.92	12.14	10.05	5.96	33.48	15.19	41.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.07	34.82	2.75	6.30	2.69	0.00
12	ER2a	ExonRegion	0	1.49	0.31	25.80	6.34	7.27	6.98	2.95	24.66	16.61	29.58	0.00	3.11	2.53	1.31	2.86	1.94	1.78	7.27	29.16	20.87	20.99	6.14	3.46
13	E2_Ab	KnownBoundary	0	6.96	0.00	45.65	7.96	16.21	8.69	2.25	65.23	27.95	49.96	0.00	6.30	0.00	2.47	5.19	0.00	3.83	13.56	68.05	51.20	61.34	13.17	7.77
14	ER2b	ExonRegion	0	2.36	2.14	62.99	20.97	7.26	7.28	0.32	107.59	41.84	120.52	0.00	1.29	0.00	4.25	1.42	0.00	2.11	59.78	214.20	100.52	58.63	42.98	47.70
15	E2_Da	KnownBoundary	0	0.00	0.00	100.50	36.73	20.80	5.51	3.75	121.99	52.86	132.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	144.59	395.12	113.64	38.18	26.51	103.72
16	E2a_E3c	KnownJunction	0	0.00	0.00	7.33	0.00	0.00	0.00	0.00	2.55	0.00	3.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER2c	ExonRegion	0	9.02	8.33	85.57	21.42	32.54	52.19	22.88	94.99	44.79	110.06	0.00	1.29	0.58	4.40	4.09	1.79	0.50	51.69	99.30	69.67	57.57	27.36	17.58
18	E2_Db	NovelBoundary	0	10.96	3.35	8.52	0.00	4.33	2.73	1.90	20.99	8.85	13.08	0.00	0.00	0.00	4.71	8.90	0.00	0.00	37.64	31.25	15.15	2.78	5.39	0.00
19	E2b_E3b	KnownJunction	0	17.63	19.27	85.63	24.84	49.24	65.13	20.89	112.13	42.62	122.14	0.00	6.30	0.00	4.89	8.90	0.00	0.00	56.46	111.72	68.90	68.57	28.60	33.46
20	E2c_E3b	KnownJunction	0	0.00	2.96	1.42	0.00	0.00	4.83	0.00	2.05	1.79	4.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.92	4.71	0.00	0.00	5.14	0.00
21	ER2d	ExonRegion	0	3.39	0.00	2.57	0.00	2.14	2.57	0.09	10.08	5.89	7.34	0.00	0.14	0.00	2.44	4.84	0.00	0.00	15.46	16.99	7.87	1.03	4.31	0.00
22	I2	Intron	0	5.23	1.64	8.93	4.09	5.26	10.26	6.14	22.59	11.78	12.58	0.29	1.08	0.00	1.01	1.01	0.60	0.17	14.25	17.34	10.29	6.11	3.46	1.04
23	I2_SR1	SilentIntronRegion	0	5.24	1.64	8.94	4.10	5.27	10.28	6.15	22.63	11.80	12.60	0.29	1.08	0.00	1.01	1.02	0.60	0.17	14.28	17.37	10.31	6.12	3.47	1.04
24	ER3a	ExonRegion	0	2.73	0.70	7.02	1.91	10.86	4.58	3.49	10.47	3.85	3.84	1.00	0.08	0.00	2.72	0.11	0.00	0.00	6.96	11.39	5.77	3.22	2.40	0.73
25	E3_Ab	KnownBoundary	0	3.78	0.00	3.52	0.00	6.96	0.00	4.28	11.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.94	5.69	0.00	0.00	0.00
26	E3_Ac	KnownBoundary	0	0.00	5.53	39.44	15.62	17.15	17.49	11.66	51.26	25.23	54.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	25.58	46.12	39.95	11.49	11.76	16.22
27	E3a_E4b	KnownJunction	0	0.00	0.00	2.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER3b	ExonRegion	0	19.47	16.27	85.78	31.89	56.19	64.92	28.60	115.46	52.37	131.66	2.71	4.33	0.00	7.47	8.70	0.00	0.00	87.21	115.95	82.13	64.79	29.59	32.30
29	ER3c	ExonRegion	0	16.16	16.82	94.08	36.24	52.06	58.43	29.31	125.16	52.60	143.94	4.13	3.54	0.00	7.31	7.91	0.00	0.00	88.61	120.32	80.17	57.80	27.09	27.63
30	ER3d	ExonRegion	0	15.12	9.37	77.91	33.40	33.94	53.57	25.87	123.98	59.56	149.16	1.02	2.65	1.44	4.39	3.13	1.11	0.36	78.12	161.52	66.90	53.84	34.36	37.10
31	E3_Db	NovelBoundary	0	19.56	0.00	24.90	1.66	12.31	5.45	3.71	35.36	14.09	21.76	0.00	0.00	0.00	0.00	0.00	0.00	4.11	19.86	16.94	5.69	0.00	0.00	7.68
32	E3b_E4a	KnownJunction	0	12.67	18.35	46.04	28.87	32.34	64.17	26.90	97.35	51.76	126.14	0.00	0.00	0.00	0.00	0.00	0.00	4.11	44.06	133.56	24.22	39.91	35.33	36.62
33	I3	Intron	0	3.51	3.68	18.73	4.29	10.09	9.13	5.79	23.32	10.28	19.86	0.00	1.08	0.00	0.00	0.00	0.00	1.00	11.79	21.63	16.69	4.66	1.89	3.54
34	I3_AR1	ActiveIntronRegion	0	3.86	3.92	20.35	4.57	10.90	9.88	6.34	25.03	11.06	21.48	0.00	1.18	0.00	0.00	0.00	0.00	1.09	12.81	22.88	17.77	5.11	2.07	3.89
35	ER4a	ExonRegion	0	9.52	12.20	39.21	21.81	24.08	46.76	23.17	81.24	42.61	116.41	0.00	0.00	0.00	0.00	2.90	0.00	6.60	57.28	122.64	39.36	40.77	35.42	23.49
36	ER4b	ExonRegion	0	23.88	15.80	76.70	26.57	44.23	85.64	32.60	114.91	60.86	147.11	2.08	1.91	1.93	2.91	5.22	0.00	5.98	64.70	122.82	55.45	62.31	28.98	37.19
37	E4_Ac	KnownBoundary	0	20.52	23.55	114.66	32.06	72.84	104.31	67.44	151.65	70.11	150.91	0.00	0.00	0.00	4.77	14.83	0.00	0.00	60.40	103.72	88.84	66.04	40.17	37.73
38	ER4c	ExonRegion	0	22.00	28.65	108.09	30.48	59.76	73.57	52.00	145.09	69.13	155.77	0.00	0.00	0.00	5.86	17.14	2.16	3.50	55.49	120.75	77.43	80.47	25.38	30.70
39	E4_Da	KnownBoundary	0	0.00	2.96	5.12	0.00	7.81	12.49	4.11	4.68	1.53	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.09	17.32	3.00	2.78	0.00	0.00
40	E4a_E4d	KnownJunction	0	31.04	35.85	81.61	27.54	50.59	55.03	33.12	113.20	56.39	125.53	0.00	0.00	0.00	9.71	13.35	4.36	4.02	35.82	108.14	85.52	82.91	28.78	37.13
41	E4a_E5a	KnownJunction	0	0.00	3.22	12.48	1.73	4.33	0.00	0.00	0.00	0.00	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E4_Db	KnownBoundary	0	0.00	0.00	12.57	0.00	3.23	0.00	2.16	16.59	1.42	14.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.14	0.00	5.69	0.00	0.00	0.00
43	ER4d	ExonRegion	0	2.12	6.10	30.63	5.45	18.73	18.34	9.27	36.30	14.82	32.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.63	15.93	12.77	8.81	0.00	2.94
44	ER4e	ExonRegion	0	3.56	5.99	40.48	3.00	13.77	16.70	3.93	37.57	16.29	35.24	0.00	0.00	0.00	1.08	0.15	0.03	0.07	28.28	29.84	19.28	12.41	1.49	5.84
45	E4_Ad	KnownBoundary	0	14.08	18.81	60.41	5.29	28.44	45.31	3.93	45.22	16.87	41.72	0.00	0.00	0.00	2.47	0.00	0.00	0.00	53.10	44.52	14.76	29.59	0.00	6.83
46	ER4f	ExonRegion	0	48.58	23.15	94.14	28.13	56.01	71.59	37.40	133.07	67.71	127.53	0.98	3.60	0.00	3.57	10.51	0.77	3.60	50.73	119.91	79.25	89.98	27.21	38.90
47	E4c_E5a	KnownJunction	0	39.93	21.77	48.52	19.64	35.91	39.18	20.49	81.37	74.45	118.54	0.00	0.00	0.00	2.47	0.00	0.00	0.00	32.87	68.24	56.25	51.34	19.59	37.90
48	E4_De	NovelBoundary	0	13.34	12.56	18.54	16.18	20.71	27.26	4.24	52.00	12.73	28.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	45.52	17.79	34.39	3.09	0.00	21.17
49	ER4g	ExonRegion	0	7.94	0.51	1.53	0.34	3.34	13.75	3.97	12.96	2.16	6.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.54	15.93	12.77	7.71	0.00	5.87
50	ER4h	ExonRegion	0	3.45	0.00	0.39	0.00	1.97	4.83	3.07	3.82	1.24	1.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.57	8.05	8.29	5.34	0.00	1.85
51	I4	Intron	0	18.33	8.44	24.73	12.89	24.16	27.97	10.82	49.97	12.35	31.28	0.00	0.00	0.94	1.12	2.35	0.00	0.00	33.29	48.97	30.37	10.75	2.80	9.32
52	I4_AR1	ActiveIntronRegion	0	18.42	8.48	24.85	12.95	24.27	28.10	10.87	50.21	12.41	31.43	0.00	0.00	0.95	1.12	2.36	0.00	0.00	33.45	49.19	30.51	10.81	2.81	9.36
53	E5_Aa	NovelBoundary	0	43.42	20.00	42.67	7.62	47.45	33.56	25.75	72.17	32.73	34.30	0.00	0.00	0.00	2.24	0.00	0.00	0.00	18.53	54.59	42.06	17.05	0.00	0.00
54	ER5a	ExonRegion	0	53.40	35.98	140.64	63.04	87.01	84.48	48.40	183.64	99.58	187.94	0.91	2.48	0.85	4.94	6.08	1.73	2.19	62.54	148.00	105.88	70.91	44.71	46.58
55	E5_Da	KnownBoundary	0	24.97	23.15	178.97	59.60	30.98	21.92	14.18	208.90	99.22	158.59	0.00	7.65	0.00	2.41	9.64	4.36	4.68	56.71	164.99	57.27	41.58	30.13	34.57
56	ER5b	ExonRegion	0	21.87	18.06	93.96	53.68	38.72	40.13	22.48	129.11	56.74	91.58	2.10	2.74	3.21	1.79	3.05	0.48	0.46	31.90	126.36	52.89	34.14	54.14	26.45
57	E5_Db	KnownBoundary	0	15.48	20.13	70.07	32.40	29.71	38.73	13.47	83.13	33.91	63.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	17.91	72.47	28.89	27.99	19.84	11.87
58	ER5c	ExonRegion	0	53.35	14.01	36.25	17.15	28.13	19.57	12.24	52.51	23.11	35.62	0.00	2.69	0.00	1.84	0.00	0.00	0.00	15.05	56.37	24.81	13.97	8.23	6.95