Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF619 Gene 0 10.97 16.77 10.88 17.05 16.98 14.52 16.15 11.45 8.22 10.19 24.18 31.84 33.91 35.83 18.27 37.89 33.25 18.37 16.40 20.53 9.64 9.19 11.11 2 314686 Transcript 0 0.00 0.55 0.00 0.00 0.00 0.83 0.00 0.00 0.64 0.00 0.00 0.79 0.00 0.07 0.59 1.15 0.45 0.38 0.00 1.02 1.58 0.00 1.60 3 432264 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 4 462961 Transcript 0 1.40 7.55 0.00 2.97 5.64 10.46 2.29 1.73 0.78 0.00 1.92 0.00 0.00 2.71 1.27 1.35 1.50 2.51 0.00 3.69 2.73 1.62 3.25 5 429348 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 396201 Transcript 0 0.00 0.00 1.18 3.66 7.01 0.88 0.00 0.04 0.00 0.00 0.75 1.97 10.66 8.11 4.62 8.65 5.09 3.01 0.07 0.00 5.75 3.40 1.47 7 456778 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.22 0.00 0.00 0.00 0.00 0.00 12.90 0.00 4.52 0.00 3.26 0.00 0.00 0.00 8 447116 Transcript 0 0.00 0.00 0.95 1.71 0.00 1.58 1.03 0.26 1.04 0.38 3.78 3.50 0.00 3.57 0.43 2.66 0.00 3.01 0.00 0.63 3.36 0.00 0.00 9 442066 Transcript 0 0.00 0.76 0.00 0.85 1.00 0.46 2.15 0.43 0.00 0.29 0.60 0.00 0.00 0.71 1.81 0.00 0.62 0.58 1.19 0.66 0.00 0.39 1.28 10 494154 Transcript 0 0.75 2.20 0.61 0.04 0.00 1.83 0.47 0.78 1.51 0.81 0.34 0.00 0.00 2.86 0.00 3.41 5.40 1.34 3.66 1.51 0.53 0.81 2.23 11 IG28_AR1 ActiveIntergenicRegion 0 4.23 5.76 0.00 0.00 20.07 11.92 5.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 1.06 4.26 0.00 0.00 0.00 12 IG28_SR1 SilentIntergenicRegion 0 10.37 25.32 0.00 0.00 59.31 26.71 23.01 0.00 0.00 0.00 0.00 0.00 9.85 0.00 3.48 5.00 2.81 0.00 13.43 24.89 0.00 0.00 2.50 13 IG28_AR3 ActiveIntergenicRegion 0 10.42 23.25 10.93 29.67 18.75 1.55 9.47 42.99 10.51 9.64 0.66 0.60 0.31 1.13 0.35 1.63 0.00 2.49 1.62 7.16 0.00 0.00 0.50 14 ER1a ExonRegion 0 0.00 1.11 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.15 1.19 2.30 0.90 0.76 0.00 2.03 0.00 0.00 3.20 15 E1_Ad KnownBoundary 0 0.00 6.31 0.00 0.00 0.00 5.68 0.00 0.00 0.00 1.32 0.00 6.00 0.00 2.12 4.45 8.63 4.49 2.11 3.95 8.95 0.00 0.00 8.71 16 ER1b ExonRegion 0 0.00 4.07 0.00 0.00 0.00 3.67 0.17 0.00 0.00 0.00 0.00 4.33 0.00 1.62 2.90 7.06 3.30 1.85 3.19 5.32 0.28 0.00 5.87 17 ER1c ExonRegion 0 0.00 4.07 0.00 0.00 0.00 6.42 3.97 0.00 0.00 0.00 3.87 4.33 0.00 1.62 2.90 11.89 3.30 5.54 3.19 6.38 2.20 0.00 8.81 18 ER1d ExonRegion 0 0.00 6.05 0.00 0.00 1.76 12.45 8.88 0.00 0.81 1.72 6.71 2.51 0.00 6.24 6.34 23.93 9.29 10.75 9.72 12.04 3.31 0.22 11.51 19 E1_Ae KnownBoundary 0 0.00 6.71 0.00 0.00 4.33 19.53 18.50 3.66 1.59 3.09 9.69 0.00 0.00 15.54 13.35 43.41 12.90 16.37 14.40 16.11 5.50 0.00 11.95 20 ER1e ExonRegion 0 0.59 4.24 2.15 0.43 1.19 5.93 3.02 1.52 1.11 2.58 8.39 6.26 2.28 10.30 3.76 6.63 10.55 6.74 4.70 8.01 3.44 2.91 3.23 21 E1a_E2a KnownJunction 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 3.15 2.74 4.47 0.00 0.00 22.49 4.33 14.95 8.13 8.12 4.42 4.79 3.09 5.57 12.55 22 ER2a ExonRegion 0 0.79 2.44 1.00 2.68 2.49 4.46 3.69 4.44 2.63 3.44 18.32 4.88 0.00 26.74 7.93 20.84 23.45 17.66 2.07 20.31 3.41 5.16 11.68 23 E2a_E3a KnownJunction 0 3.78 0.00 3.55 1.27 4.33 0.00 3.89 4.81 1.36 2.69 21.85 12.60 0.00 9.30 9.77 20.42 25.43 11.81 4.80 20.13 0.00 0.00 8.02 24 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.22 0.00 0.00 0.00 0.00 0.00 12.90 0.00 4.52 0.00 3.26 0.00 0.00 0.00 25 E2a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 26 ER3a ExonRegion 0 5.27 8.28 2.77 8.17 6.09 8.91 7.81 5.74 2.44 5.24 19.04 10.44 2.10 26.57 6.73 14.33 15.85 10.92 7.14 16.15 8.71 0.90 7.23 27 E3_Da KnownBoundary 0 17.93 17.89 3.90 7.79 4.33 0.00 3.58 6.94 3.62 2.23 18.11 5.85 0.00 21.60 0.00 26.92 14.12 8.71 16.57 15.53 5.31 0.00 14.94 28 E3a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E3_Db KnownBoundary 0 0.00 3.09 0.00 3.20 4.33 2.61 1.81 2.55 0.00 0.00 4.95 0.00 0.00 2.47 0.00 0.00 0.00 0.00 4.80 6.52 5.81 2.82 4.35 30 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 2.47 0.00 3.85 4.30 0.00 4.14 0.00 0.00 0.00 0.00 31 E3b_E4b KnownJunction 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E3b_E5a KnownJunction 0 12.67 11.64 3.58 2.90 0.00 7.50 12.81 5.79 2.92 0.00 13.90 0.00 19.97 21.48 4.94 19.82 31.51 8.00 3.76 23.01 5.68 3.12 11.44 33 ER3b ExonRegion 1 15.96 19.08 3.86 10.80 5.35 8.60 11.30 7.84 4.37 3.26 27.51 4.00 12.27 29.98 4.91 30.41 28.95 9.52 18.62 27.50 11.02 4.17 18.75 34 ER3c ExonRegion 0 1.40 7.55 0.00 2.97 5.64 10.46 2.29 1.73 0.78 0.00 1.92 0.00 0.00 2.71 1.27 1.35 1.50 2.51 0.00 3.69 2.73 1.62 3.25 35 E4_Aa NovelBoundary 0 10.00 3.35 0.00 8.02 0.00 0.00 1.77 2.46 1.79 1.67 7.90 0.00 6.17 5.06 0.00 8.54 9.16 2.53 0.00 0.00 0.00 3.12 12.55 36 E4_Ab NovelBoundary 0 3.78 9.93 3.67 0.00 0.00 5.79 4.24 2.38 3.44 4.32 2.11 0.00 0.00 4.77 0.00 6.92 13.84 2.57 3.58 11.76 5.50 3.12 4.35 37 ER4a ExonRegion 0 1.50 4.40 1.23 0.09 0.00 3.67 0.94 1.56 1.24 1.63 0.69 0.00 0.00 3.25 0.00 2.97 6.50 2.68 3.19 3.02 1.07 1.61 4.45 38 ER4b ExonRegion 0 2.52 2.53 0.65 0.57 3.72 5.18 5.01 1.89 1.43 2.60 3.09 0.00 0.00 5.91 0.00 6.19 6.27 8.43 0.20 4.91 3.07 0.51 6.91 39 E4_Db NovelBoundary 0 3.78 9.74 0.00 2.06 12.56 25.04 2.16 5.09 0.00 0.00 2.42 0.00 0.00 2.41 0.00 7.78 4.02 2.40 4.80 0.00 3.15 3.12 4.35 40 E4b_E5a KnownJunction 0 0.00 0.00 1.63 2.06 0.00 2.90 0.00 0.00 1.33 0.00 5.00 10.50 0.00 4.83 0.00 4.36 0.00 3.90 0.00 0.00 5.68 0.00 0.00 41 ER4c ExonRegion 0 0.00 0.00 1.23 1.36 0.00 1.83 3.09 0.77 1.78 1.15 3.87 0.00 0.00 3.25 1.29 3.63 0.00 5.13 0.00 1.89 4.41 0.00 0.00 42 ER5a ExonRegion 0 8.47 10.17 4.90 2.73 2.01 7.34 13.90 6.91 4.94 4.01 28.03 0.00 14.07 24.77 11.61 32.69 26.41 14.32 9.56 20.21 12.12 2.08 8.08 43 ER5b ExonRegion 0 4.98 10.69 3.50 8.27 11.32 7.71 10.25 8.57 6.19 9.26 13.15 13.60 10.58 37.07 19.00 32.40 23.66 15.81 16.77 23.07 13.14 5.00 13.80 44 E5a_E6a KnownJunction 0 0.00 0.00 1.42 3.23 8.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.47 0.00 8.37 4.02 1.91 0.00 0.00 5.68 2.63 0.00 45 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 46 E5a_E7a KnownJunction 0 17.04 20.85 7.33 11.05 10.78 17.94 8.21 11.09 7.32 12.97 6.37 18.91 34.58 41.67 14.09 22.90 24.96 13.85 38.12 38.67 9.02 7.41 15.71 47 E6_Aa NovelBoundary 1 256.93 139.65 200.35 214.79 176.23 144.46 251.24 294.62 199.51 187.44 75.07 44.41 85.38 20.84 80.72 172.43 127.16 171.33 68.61 154.42 99.40 59.27 169.02 48 E6_Ab NovelBoundary 1 959.50 1136.57 683.12 892.53 890.66 635.49 1218.32 772.64 686.94 719.82 452.06 139.55 233.59 131.73 342.79 1113.13 777.93 878.81 811.22 1216.66 618.76 446.64 1029.48 49 ER6a ExonRegion 1 0.00 0.00 0.95 4.09 5.35 1.75 0.00 0.08 0.00 0.00 1.49 3.94 21.32 11.74 9.23 8.92 6.15 4.12 0.14 0.00 5.81 4.17 2.94 50 ER6b ExonRegion 0 0.00 0.00 0.00 3.39 0.33 1.12 0.95 0.21 0.00 0.84 2.37 1.94 15.79 6.17 7.16 4.31 3.30 3.66 4.23 1.74 6.30 1.91 1.56 51 E6_Da NovelBoundary 0 32.38 19.73 7.57 4.99 23.26 2.33 34.18 2.01 11.89 4.27 9.74 0.00 26.62 4.77 0.00 19.74 8.04 12.19 16.94 37.07 13.41 5.39 19.63 52 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.67 2.63 0.00 0.00 2.30 5.19 12.13 0.00 2.49 4.61 2.68 3.15 0.00 0.00 53 ER7a ExonRegion 0 12.51 17.68 11.14 15.50 15.14 12.94 18.28 13.66 10.10 12.40 28.21 25.42 37.49 53.36 18.29 43.90 40.87 15.49 19.39 32.99 11.90 10.87 14.23 54 E7_Da KnownBoundary 0 0.00 12.56 16.08 36.59 34.47 21.86 10.02 18.15 10.62 14.51 29.32 55.07 72.07 31.61 4.45 55.46 43.67 13.80 14.40 37.65 17.42 14.51 8.71 55 ER7b ExonRegion 0 17.52 24.81 14.15 23.35 24.74 21.61 23.87 17.64 13.71 16.85 31.15 48.26 46.06 47.47 25.39 52.25 47.14 20.03 21.03 25.68 12.37 14.20 13.21 56 E7_Ab KnownBoundary 1 20.37 31.70 35.16 35.79 41.51 58.89 28.93 20.09 14.64 20.01 25.27 99.48 20.45 35.32 9.64 46.48 82.47 26.07 25.51 17.83 14.27 11.45 15.54 57 ER7c ExonRegion 0 17.86 24.05 19.67 28.17 25.78 17.68 22.44 16.68 12.01 13.54 36.88 53.57 55.20 46.95 28.44 62.67 49.73 34.36 25.55 27.47 14.75 13.49 15.22 58 E7_Db KnownBoundary 1 18.37 19.80 33.85 35.13 40.32 8.35 43.63 26.33 5.84 9.43 25.90 25.51 100.81 68.04 23.73 27.34 84.81 9.00 16.66 30.87 2.53 13.96 37.82 59 ER7d ExonRegion 0 5.50 16.35 13.51 23.93 23.50 16.27 19.07 10.08 4.59 7.27 25.69 36.33 61.46 40.09 15.11 21.84 27.06 7.67 17.50 16.70 2.15 8.16 8.38 60 E7_Dc KnownBoundary 0 0.00 22.89 24.54 27.60 21.82 34.70 24.78 5.50 5.32 6.39 23.90 7.05 54.38 38.20 22.99 34.26 22.72 16.79 19.39 8.50 3.15 8.39 3.67 61 ER7e ExonRegion 0 0.00 11.14 9.65 10.42 7.30 15.17 11.23 2.48 1.05 1.27 12.64 2.80 22.77 25.07 21.70 16.35 10.59 11.05 21.43 6.74 1.24 4.86 5.38 62 ER7f ExonRegion 0 0.00 1.53 0.00 1.70 2.01 0.92 4.30 0.86 0.00 0.57 1.21 0.00 0.00 1.42 3.63 0.00 1.24 1.15 2.39 1.33 0.00 0.78 2.57 63 IG29 Intergenic 0 9.14 6.05 6.89 10.31 15.03 2.80 10.19 5.40 4.26 3.77 5.73 8.43 9.55 11.39 9.90 17.13 10.86 5.80 5.60 6.39 2.71 3.24 4.05 64 IG29_SR1 SilentIntergenicRegion 0 3.14 9.60 3.82 7.31 10.17 7.14 8.15 3.88 4.94 2.96 6.49 11.89 11.72 22.60 10.92 16.21 13.00 5.81 7.68 5.20 1.75 4.83 3.82 65 IG29_AR1 ActiveIntergenicRegion 0 20.31 25.80 15.36 29.27 38.15 10.25 25.57 12.87 10.42 13.14 22.68 28.86 32.63 33.87 20.61 42.84 24.95 17.75 9.58 15.80 3.70 12.09 6.72 66 IG29_AR2 ActiveIntergenicRegion 0 9.63 3.16 7.64 10.12 13.13 2.25 8.36 5.39 4.45 3.08 3.98 4.95 7.24 7.90 10.45 17.27 9.66 6.70 4.83 4.92 2.86 1.73 3.39