Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MON1A Gene 0 9.02 17.83 45.54 22.39 7.33 19.86 11.42 22.67 17.30 21.73 22.24 7.38 7.20 23.02 28.48 20.74 19.31 44.87 15.08 29.57 21.53 15.10 13.50 2 417270 Transcript 0 0.76 1.48 1.06 0.37 0.73 0.17 0.48 0.44 0.34 0.65 0.53 1.58 0.43 0.82 2.24 0.81 1.14 1.22 0.00 1.69 0.00 0.21 0.53 3 296473 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 1.98 3.30 0.00 0.00 0.00 0.00 0.00 0.00 4 455683 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 419032 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 486107 Transcript 0 3.44 6.82 16.60 8.90 1.95 6.86 6.21 9.04 3.38 4.39 5.26 0.83 1.13 6.27 7.74 8.18 6.05 19.56 9.34 14.96 8.02 8.36 4.82 7 473451 Transcript 0 3.02 5.94 5.19 3.78 2.13 2.92 4.44 5.46 3.17 2.53 3.95 3.54 1.91 3.33 1.86 3.74 4.49 8.75 2.17 6.77 2.85 3.13 2.64 8 483022 Transcript 0 0.61 2.60 0.79 1.46 0.39 0.53 0.38 0.37 0.25 0.74 0.57 0.51 0.00 0.58 1.01 0.43 0.48 0.40 0.46 3.35 0.00 0.91 0.85 9 313379 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 493206 Transcript 0 0.00 0.07 1.36 0.46 0.93 0.00 0.19 0.06 0.31 1.26 0.00 0.00 0.00 0.00 0.99 1.69 0.00 0.48 0.00 1.43 0.00 0.00 2.66 11 484985 Transcript 0 0.00 0.00 1.26 1.01 1.96 0.00 0.00 0.07 4.61 0.44 0.02 0.00 0.00 0.00 0.07 0.10 0.00 0.09 0.00 0.05 0.00 0.00 1.11 12 ER1a ExonRegion 0 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.07 0.00 13 ER1b ExonRegion 0 0.00 0.00 1.90 0.00 1.03 0.39 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.62 0.00 0.00 2.53 4.22 0.00 1.50 0.00 1.58 0.00 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1c ExonRegion 0 0.00 0.00 0.76 0.74 0.00 0.34 0.00 0.48 0.00 0.71 0.00 0.00 0.00 0.00 1.27 0.00 1.37 1.01 0.52 1.76 0.00 1.73 0.00 16 E1_Ad KnownBoundary 0 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 17 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 18 ER1d ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 1.85 3.19 0.00 0.00 0.00 0.00 19 ER1e ExonRegion 0 4.27 2.00 1.11 1.72 1.36 10.55 2.92 3.52 0.00 1.82 3.68 0.00 0.00 1.04 3.50 2.07 4.48 6.00 2.94 1.69 0.54 4.68 3.16 20 E1_Af KnownBoundary 0 17.19 8.81 4.76 4.00 4.33 35.77 10.86 5.05 3.21 4.67 12.11 0.00 0.00 2.47 4.45 3.93 9.16 18.70 4.52 2.62 2.66 11.39 11.69 21 ER1f ExonRegion 1 20.40 16.44 13.22 4.56 8.14 28.78 8.88 6.39 3.89 10.78 18.01 0.00 0.00 9.07 27.72 12.55 17.19 13.73 13.10 15.75 7.25 16.73 22.72 22 E1_Ag KnownBoundary 1 44.90 48.15 41.04 12.32 26.91 43.50 22.26 14.05 14.26 26.57 69.81 0.00 0.00 12.13 72.32 54.17 33.66 54.10 60.90 71.78 13.90 31.72 40.72 23 ER1g ExonRegion 0 7.61 14.90 33.92 14.71 5.86 15.65 7.79 19.93 13.62 22.51 33.38 1.19 1.75 10.22 19.51 8.28 20.37 27.89 24.96 29.52 22.63 14.49 13.13 24 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E1a_E5a KnownJunction 0 3.78 5.26 63.60 31.66 3.90 5.68 10.82 31.34 32.26 40.96 72.65 0.00 6.82 35.08 28.06 11.88 27.12 84.86 30.31 63.09 46.15 24.13 25.52 27 ER2a ExonRegion 0 0.00 0.14 2.72 0.91 1.87 0.00 0.38 0.12 0.63 0.00 0.00 0.00 0.00 0.00 1.99 3.38 0.00 0.96 0.00 2.86 0.00 0.00 5.31 28 E2_Ab KnownBoundary 0 0.00 0.00 8.01 1.96 0.00 0.00 4.33 0.00 1.53 0.00 0.00 0.00 0.00 0.00 4.45 7.09 4.30 3.73 0.00 8.82 0.00 0.00 4.35 29 ER2b ExonRegion 0 0.00 1.92 1.68 3.19 0.00 6.36 1.70 5.02 3.92 1.61 0.04 0.00 0.00 0.00 2.65 0.58 1.63 4.77 1.58 8.51 0.00 1.03 2.20 30 E2_Da KnownBoundary 0 0.00 0.00 2.31 5.29 0.00 0.00 0.00 0.00 3.04 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 0.00 31 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER2c ExonRegion 0 0.00 0.00 0.68 2.01 0.44 0.00 0.00 0.14 3.93 0.88 0.03 0.00 0.00 0.00 0.14 0.19 0.00 0.18 0.00 0.10 0.00 0.00 2.21 33 E2b_E5a KnownJunction 0 0.00 0.00 1.83 0.00 3.48 0.00 0.00 0.00 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER3a ExonRegion 0 3.04 5.93 3.31 1.49 2.92 0.67 1.93 1.74 1.35 2.49 2.11 6.31 1.71 3.27 8.95 3.25 4.55 4.87 0.00 6.17 0.00 0.76 2.14 35 E3_Da NovelBoundary 0 85.42 25.78 47.10 39.06 21.22 26.06 6.71 45.76 33.68 20.44 91.92 0.00 14.45 4.77 0.00 42.21 51.24 39.01 9.04 8.95 6.24 21.06 41.49 36 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E4_Aa NovelBoundary 0 3.78 0.00 10.23 7.76 0.00 0.00 10.11 1.60 6.22 2.90 5.11 0.00 0.00 4.59 12.49 17.35 0.00 9.99 0.00 20.65 0.00 0.00 11.61 38 ER4a ExonRegion 0 1.83 7.81 2.37 4.39 1.16 1.59 1.14 1.11 0.76 2.22 1.70 1.54 0.00 1.75 3.02 1.28 1.43 1.19 1.38 10.06 0.00 2.72 2.54 39 E4_Da NovelBoundary 0 10.82 5.79 7.10 5.33 17.15 0.00 4.50 1.85 3.59 3.17 2.68 0.00 15.10 2.12 0.00 0.00 0.00 4.23 0.00 14.70 3.15 0.00 0.00 40 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E5_Aa NovelBoundary 0 9.04 18.94 6.83 5.53 0.00 0.00 0.00 4.35 4.77 5.43 2.21 0.00 0.00 0.00 4.45 0.00 0.00 3.90 0.00 6.33 0.00 3.06 4.10 42 ER5a ExonRegion 0 4.54 19.30 79.00 54.53 10.32 43.08 11.75 42.71 40.38 38.07 50.42 17.19 11.22 43.77 43.48 54.05 36.69 106.36 46.32 62.52 48.75 31.46 38.11 43 E5_Da KnownBoundary 0 0.00 6.71 3.58 0.00 3.31 4.71 1.63 6.49 1.39 2.12 2.21 0.00 0.00 2.30 0.00 4.10 0.00 15.55 0.00 11.25 0.00 8.02 4.35 44 E5a_E6a KnownJunction 0 0.00 12.04 81.31 36.89 18.93 52.24 32.99 24.85 31.80 43.41 47.96 21.46 0.00 38.26 20.40 23.16 41.70 64.17 7.81 51.71 37.50 27.98 19.63 45 E5a_E7a KnownJunction 0 2.82 10.06 6.92 11.69 0.00 5.45 0.00 13.84 7.41 8.57 6.95 0.00 0.00 0.00 14.59 3.85 4.49 13.27 11.77 0.00 27.37 3.12 7.94 46 ER5b ExonRegion 0 3.02 5.94 5.19 3.78 2.13 2.92 4.44 5.46 3.17 2.53 3.95 3.54 1.91 3.33 1.86 3.74 4.49 8.75 2.17 6.77 2.85 3.13 2.64 47 ER6a ExonRegion 0 12.94 29.68 73.32 31.36 9.44 33.32 19.06 21.26 28.15 39.00 36.93 9.70 2.40 41.86 34.14 28.51 29.40 52.41 11.82 47.21 30.83 20.38 16.82 48 E6_Da KnownBoundary 0 10.15 29.99 79.00 44.78 0.00 22.43 20.49 33.06 35.10 35.54 28.53 19.21 0.00 28.49 50.31 15.38 24.87 46.64 16.47 49.54 32.37 18.68 4.35 49 ER6b ExonRegion 0 10.95 27.60 66.80 37.59 4.82 32.44 22.43 30.60 31.29 48.50 48.59 7.26 2.72 48.93 41.34 35.05 40.52 72.39 15.11 70.18 39.47 25.96 24.79 50 E6_Db KnownBoundary 0 12.89 29.80 86.75 43.92 11.80 58.32 35.24 48.80 50.23 56.84 62.17 20.26 0.00 43.62 70.71 44.52 27.21 99.24 19.11 76.44 37.68 19.96 20.57 51 ER6c ExonRegion 0 21.71 39.64 90.77 57.49 18.97 57.30 33.05 54.63 43.76 54.01 54.69 16.93 1.74 61.94 66.86 56.14 46.21 110.93 19.72 82.72 40.93 23.46 17.29 52 E6_Dc NovelBoundary 0 2.74 21.84 48.64 23.14 3.48 4.20 6.93 26.21 20.28 29.49 17.53 0.00 6.01 12.89 4.57 9.48 17.11 36.81 3.48 26.72 9.88 6.80 7.51 53 E6_Dd NovelBoundary 0 0.00 3.35 7.21 0.00 8.66 0.00 0.00 0.00 2.89 1.61 0.00 6.30 0.00 2.47 0.00 3.59 7.67 13.72 0.00 12.27 0.00 2.57 12.29 54 E6d_E7a KnownJunction 0 6.74 39.27 110.91 49.04 7.89 38.10 29.01 58.24 42.79 60.01 56.01 0.00 6.98 60.33 67.99 35.89 65.45 112.88 20.89 62.77 34.90 20.08 19.12 55 ER6d ExonRegion 0 6.70 34.91 97.42 43.39 9.37 34.84 19.86 48.97 34.58 48.36 55.73 2.16 4.69 55.76 69.15 34.18 56.12 103.78 19.11 72.69 40.40 27.09 18.60 56 Ix Intron 0 8.04 8.19 13.03 4.91 5.24 4.22 4.73 7.12 5.09 2.95 3.78 3.65 2.70 6.73 4.44 4.79 7.22 7.73 3.67 7.84 4.06 1.92 0.68 57 Ix_AR1 ActiveIntronRegion 0 12.04 9.84 19.93 8.38 6.79 6.10 5.76 11.01 9.11 4.01 4.90 4.01 5.27 9.98 5.02 5.70 11.60 10.32 5.33 10.33 6.19 1.76 0.68 58 E7_Aa NovelBoundary 0 11.34 0.00 26.20 8.82 19.27 7.15 6.67 11.75 4.31 3.33 4.11 6.30 0.00 9.71 5.19 3.42 9.54 39.63 13.46 27.48 12.42 0.00 0.00 59 ER7a ExonRegion 0 25.41 48.37 127.84 56.68 18.70 52.41 27.54 62.64 46.96 56.19 57.45 22.60 29.32 63.99 77.61 57.46 52.19 128.29 39.31 67.80 58.71 36.75 33.60 60 E7_Da KnownBoundary 0 0.00 5.53 13.54 10.75 0.00 14.14 8.79 0.00 10.73 10.88 2.32 0.00 6.66 2.12 5.81 3.33 9.35 20.48 13.46 29.27 2.41 11.45 3.24 61 E7a_E7b KnownJunction 0 9.93 52.95 149.52 74.18 48.98 82.34 42.00 87.12 68.87 57.75 63.12 12.15 35.55 53.86 105.94 88.78 83.03 124.57 60.24 83.80 61.16 44.95 49.08 62 ER7b ExonRegion 0 4.73 9.20 16.57 9.80 3.79 7.97 6.50 8.22 3.11 6.79 4.64 1.66 2.02 8.33 8.45 6.73 6.83 21.69 8.97 13.67 7.31 9.34 6.76 63 E7_Ab KnownBoundary 0 6.59 6.25 18.69 11.29 3.90 9.88 4.46 13.64 2.98 5.16 5.26 0.00 0.00 0.00 14.83 3.50 4.68 17.99 3.86 20.13 8.22 2.51 8.37 64 ER7c ExonRegion 0 18.01 32.76 133.42 58.41 26.94 44.52 22.92 65.66 47.47 55.75 48.31 15.14 16.40 49.26 85.42 46.91 46.17 102.34 36.34 61.35 59.64 34.43 30.55 65 E7_Db KnownBoundary 0 0.00 5.85 16.50 7.76 0.00 0.00 0.00 9.08 6.11 2.55 7.69 0.00 0.00 14.42 8.90 7.26 3.65 22.18 20.99 17.64 7.97 5.63 0.00 66 E7b_E7c KnownJunction 0 36.45 44.66 124.24 69.82 18.17 70.47 26.14 62.02 28.27 49.48 56.96 0.00 14.28 26.19 41.91 42.38 30.20 119.26 30.02 61.87 40.96 24.68 31.24 67 ER7d ExonRegion 0 2.16 4.44 16.62 8.00 0.11 5.76 5.92 9.86 3.66 1.98 5.88 0.00 0.24 4.22 7.03 9.64 5.27 17.43 9.72 16.25 8.73 7.39 2.88 68 E7_Ac KnownBoundary 0 10.59 8.49 12.30 2.06 0.00 2.84 2.25 13.64 1.79 3.20 2.37 0.00 0.00 5.12 11.13 15.12 7.76 19.98 4.42 14.83 6.18 8.08 4.01 69 ER7e ExonRegion 0 6.14 12.94 55.71 29.25 6.41 14.99 10.86 29.07 20.01 27.02 24.62 4.10 5.06 22.77 51.35 21.36 9.69 31.41 17.24 29.31 25.77 18.00 13.22 70 ER7f ExonRegion 0 0.00 0.00 1.84 4.09 0.00 3.67 1.32 0.00 0.62 1.72 1.93 0.00 4.69 5.68 8.70 2.97 3.30 0.00 0.00 1.06 0.00 0.00 0.00 71 ER7g ExonRegion 0 0.00 0.00 0.00 1.36 0.00 3.67 1.32 0.00 0.00 0.00 1.93 0.00 0.00 3.25 5.80 2.97 3.30 0.00 0.00 0.00 0.00 0.00 0.00 72 ER7h ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 1.98 3.30 0.00 0.00 0.00 0.00 0.00 0.00