Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DCP1A Gene 0 86.72 157.48 82.76 71.38 65.10 74.08 59.98 65.45 47.90 52.19 69.30 107.51 106.68 101.00 54.23 68.53 107.80 101.02 45.38 73.77 62.50 91.04 66.89 2 294241 Transcript 1 57.52 123.81 84.23 44.77 52.39 86.82 36.99 58.15 49.56 56.09 75.82 65.60 98.93 149.54 31.32 106.19 119.84 158.88 39.85 72.90 91.72 84.39 75.51 3 480258 Transcript 0 10.58 8.13 3.06 2.73 6.69 3.67 3.97 3.46 1.85 0.57 0.00 0.00 0.00 0.00 4.35 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 4 494659 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 461753 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 398650 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 3.07 6.36 0.16 0.24 0.79 4.73 1.41 0.35 1.46 0.44 4.39 0.22 1.62 3.37 1.00 4.92 2.24 1.73 2.08 1.69 1.89 0.45 0.72 8 E1_Ab KnownBoundary 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 12.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ad KnownBoundary 0 80.24 187.93 10.61 15.88 33.79 41.74 62.40 13.10 9.26 10.91 46.33 6.30 13.80 62.92 33.38 40.84 83.87 61.97 27.39 78.94 63.57 5.69 47.04 11 ER1b ExonRegion 1 75.14 211.15 15.73 15.67 46.83 72.74 82.31 20.45 17.09 16.82 81.18 4.33 18.76 67.67 43.04 72.32 128.73 101.01 45.66 84.40 87.78 24.65 62.65 12 ER1c ExonRegion 1 92.07 267.42 18.38 21.81 56.19 99.03 95.33 24.20 23.47 24.08 109.21 4.33 18.76 94.20 53.67 102.54 174.95 136.73 60.52 105.32 123.41 44.80 96.91 13 ER1d ExonRegion 0 69.76 173.18 35.75 28.52 30.36 52.93 53.24 28.17 30.58 33.87 84.90 24.15 22.23 62.51 39.98 72.06 147.54 134.46 49.96 81.88 107.36 57.37 83.28 14 E1a_E2a KnownJunction 1 13.04 53.28 29.72 7.29 6.37 5.17 7.99 13.51 29.63 28.26 125.45 31.96 38.80 45.91 17.80 16.06 182.89 10.07 0.00 71.72 146.54 30.43 12.21 15 ER2a ExonRegion 1 7.28 60.61 62.97 32.94 13.31 3.31 10.08 40.56 39.25 55.05 142.80 44.14 46.79 54.19 31.14 48.35 276.55 102.48 38.69 136.74 171.19 66.57 40.75 16 E2a_E3a KnownJunction 0 3.78 84.39 83.17 60.76 25.21 4.54 14.88 56.48 51.59 66.94 121.29 103.68 60.22 98.83 30.16 108.26 314.17 192.84 111.16 193.67 145.86 114.20 89.12 17 E2a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 2.22 3.41 5.08 2.63 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 8.15 2.63 0.00 18 ER3a ExonRegion 0 14.58 115.95 88.50 66.92 64.30 64.23 73.86 64.17 60.94 52.69 69.49 104.65 92.37 129.99 76.14 124.41 154.06 190.84 77.99 139.21 56.95 132.29 135.52 19 E3a_E4a KnownJunction 0 12.89 171.61 133.79 57.70 84.38 131.57 164.42 66.95 54.77 46.04 70.28 126.04 104.38 131.09 42.52 54.09 164.47 118.10 37.46 134.10 57.95 114.38 45.93 20 I3_AR1 ActiveIntronRegion 0 5.25 8.77 10.30 19.41 5.72 1.80 14.25 5.23 4.34 2.06 1.12 7.29 8.37 1.71 6.13 4.42 4.85 3.14 5.13 10.21 1.53 0.72 5.16 21 I3_SR5 SilentIntronRegion 0 8.04 8.06 24.30 19.55 9.99 2.11 10.29 4.80 3.41 4.34 0.00 6.62 14.44 0.56 3.03 3.30 1.22 2.30 4.71 5.83 0.00 2.31 0.00 22 E4_Aa NovelBoundary 0 16.37 5.72 36.60 33.86 8.66 5.00 22.35 11.91 3.12 6.26 0.00 0.00 0.00 0.00 0.00 7.95 0.00 0.00 0.00 8.56 0.00 0.00 0.00 23 ER4a ExonRegion 0 62.61 239.63 96.69 63.30 36.74 52.47 55.94 62.30 57.31 51.90 86.03 154.25 114.87 118.05 53.31 72.57 154.75 128.05 49.68 140.04 101.17 106.73 70.13 24 E4_Da NovelBoundary 0 7.41 17.50 60.35 25.87 12.31 9.54 11.92 12.12 10.47 3.84 2.58 6.30 0.00 0.00 0.00 0.00 4.49 1.58 8.66 6.07 0.00 3.00 3.84 25 E4a_E5a KnownJunction 0 95.87 247.85 72.53 60.30 30.56 26.86 20.98 76.56 58.62 65.22 94.87 160.55 121.75 115.96 65.02 78.78 167.55 152.88 59.39 132.50 119.79 113.28 79.81 26 I4 Intron 0 18.17 16.51 26.90 18.15 12.57 4.39 13.00 10.02 4.59 4.72 1.25 5.89 6.59 0.94 4.98 6.15 4.85 4.32 8.14 6.78 2.33 1.96 4.91 27 I4_SR1 SilentIntronRegion 0 18.18 16.52 26.92 18.16 12.57 4.39 13.01 10.02 4.59 4.72 1.25 5.89 6.59 0.94 4.98 6.15 4.85 4.32 8.14 6.78 2.33 1.96 4.92 28 E5_Aa NovelBoundary 0 10.67 20.00 30.60 22.51 3.90 0.00 19.61 9.78 8.42 11.20 0.00 5.40 13.47 0.00 0.00 11.11 17.58 14.67 23.53 18.86 5.81 0.00 6.49 29 ER5a ExonRegion 0 66.14 158.28 95.72 51.51 25.37 27.70 38.38 68.47 58.86 64.59 89.87 138.57 129.20 162.22 64.39 76.01 180.17 149.00 58.07 128.32 134.66 109.05 82.97 30 E5_Da NovelBoundary 0 30.38 6.58 25.55 11.35 15.20 0.00 8.48 10.88 4.92 3.95 0.00 12.00 20.78 2.47 0.00 18.88 22.35 19.36 13.27 11.89 14.52 2.33 7.68 31 E5a_E6a KnownJunction 1 55.86 173.46 72.38 45.82 43.55 34.07 45.49 82.11 47.71 84.40 131.14 111.34 149.99 193.66 15.82 75.54 233.19 166.56 70.78 138.70 138.26 81.56 81.01 32 E5a_E7a KnownJunction 0 0.00 19.80 4.79 1.50 0.00 0.00 8.08 3.86 6.80 1.18 10.06 24.76 6.66 5.42 12.49 3.50 8.70 11.77 0.00 15.66 11.24 4.71 0.00 33 I5 Intron 0 17.13 20.43 24.28 20.46 17.08 6.72 22.67 9.75 5.11 3.92 2.54 14.53 17.77 3.28 9.36 11.09 10.83 9.06 13.24 11.23 4.76 5.15 8.79 34 I5_SR1 SilentIntronRegion 1 5.27 8.43 9.84 5.89 11.09 4.56 13.72 1.07 0.76 2.13 0.00 4.54 11.55 2.77 18.19 11.09 5.47 9.90 13.21 7.94 5.48 0.00 6.09 35 I5_SR2 SilentIntronRegion 0 17.54 20.85 24.79 20.97 17.29 6.80 22.99 10.05 5.26 3.99 2.62 14.88 17.99 3.30 9.06 11.10 11.02 9.04 13.24 11.34 4.73 5.33 8.89 36 E6_Aa NovelBoundary 0 84.01 66.17 33.85 27.70 28.35 13.40 37.94 8.71 6.54 1.34 2.21 6.30 13.15 4.53 4.45 15.38 4.68 8.91 14.02 3.00 14.95 5.69 11.52 37 ER6a ExonRegion 0 73.39 193.26 86.23 77.80 42.84 90.35 74.39 78.19 59.64 71.38 117.09 149.33 157.82 174.25 71.72 99.15 194.06 190.90 70.11 123.37 140.88 128.03 114.66 38 E6_Da NovelBoundary 0 34.08 60.58 38.23 38.66 22.58 9.65 16.30 21.69 14.50 11.82 10.00 18.46 6.82 14.42 20.03 22.81 30.11 42.16 73.88 11.63 17.05 15.12 18.44 39 E6a_E7a KnownJunction 0 49.19 131.62 76.31 98.62 38.37 74.22 48.31 90.98 83.45 85.58 129.72 155.75 194.47 196.66 81.22 138.77 219.82 208.22 86.68 160.30 130.60 124.73 107.81 40 I6_SR1 SilentIntronRegion 0 9.85 13.29 10.48 17.52 9.75 7.48 21.26 7.35 4.78 3.64 4.81 17.14 18.72 3.55 8.86 11.05 8.94 7.80 13.34 14.36 4.37 5.34 8.06 41 I6_AR1 ActiveIntronRegion 0 5.90 5.81 6.19 8.68 6.80 6.21 15.62 4.17 2.12 2.13 4.44 11.73 24.63 3.55 5.61 6.19 8.42 6.37 10.89 14.50 3.51 4.83 3.62 42 I6_AR2 ActiveIntronRegion 0 7.90 19.80 5.00 3.63 5.77 4.69 8.42 4.67 6.65 2.38 7.69 24.05 22.98 7.28 7.44 10.69 6.44 5.30 4.44 12.19 6.75 4.17 8.59 43 I6_SR3 SilentIntronRegion 0 10.63 6.24 7.11 8.65 4.88 4.86 12.67 5.08 5.60 3.24 5.71 12.92 15.96 6.70 7.65 16.08 15.85 15.71 11.70 15.07 8.72 6.72 15.85 44 I6_AR3 ActiveIntronRegion 0 13.17 4.26 10.61 6.72 7.75 5.79 9.93 10.82 11.09 5.55 10.22 16.42 25.83 7.62 10.23 20.56 22.51 24.36 16.18 25.65 19.67 10.34 21.20 45 I6_AR4 ActiveIntronRegion 0 10.28 9.71 7.80 5.78 6.27 6.14 10.20 7.98 6.63 5.15 8.74 24.70 19.59 4.21 6.09 12.69 13.27 10.85 13.33 18.35 6.45 8.54 12.05 46 E7_Aa NovelBoundary 0 16.67 38.41 15.70 11.59 7.81 16.92 6.18 10.80 10.79 6.93 4.58 25.81 43.34 7.42 8.90 18.46 13.28 14.05 30.31 23.33 5.56 2.39 21.17 47 ER7a ExonRegion 0 57.46 126.58 114.34 92.59 48.70 86.36 59.04 99.84 81.82 84.43 126.51 131.83 187.92 206.25 85.24 147.89 227.78 269.68 95.82 127.15 157.03 146.95 133.44 48 E7a_E8a KnownJunction 1 66.53 157.34 83.62 64.26 60.95 51.16 80.55 46.41 47.08 57.97 93.29 130.84 34.25 185.94 72.69 90.15 156.99 194.46 36.24 111.66 82.29 91.91 84.08 49 I7 Intron 0 6.04 15.14 11.33 18.27 10.13 8.88 13.96 7.51 6.28 6.36 6.12 11.85 12.64 9.22 4.27 15.67 12.29 12.65 14.62 9.77 10.80 13.06 18.77 50 I7_AR1 ActiveIntronRegion 0 6.03 12.24 11.38 19.30 11.30 9.69 13.42 6.53 7.39 6.86 7.35 11.72 14.49 10.71 5.10 21.97 19.17 17.94 19.84 12.13 12.33 15.18 25.12 51 I7_SR1 SilentIntronRegion 0 6.15 19.62 11.47 17.07 8.61 7.86 15.00 9.07 4.78 5.75 4.44 12.25 10.18 7.16 3.14 6.83 2.53 5.20 7.32 6.49 8.74 10.21 9.86 52 E8_Aa NovelBoundary 0 22.08 49.33 9.79 35.39 35.14 63.54 32.19 14.66 11.34 5.43 4.74 12.60 12.99 21.78 4.45 7.35 3.55 6.30 4.80 11.44 5.93 20.70 3.93 53 ER8a ExonRegion 0 65.75 142.15 89.55 56.19 72.95 105.61 71.58 59.62 54.47 69.19 108.50 98.30 80.73 212.41 57.12 131.07 175.00 207.49 55.20 87.44 112.64 109.16 109.33 54 E8a_E9a KnownJunction 1 60.01 124.58 85.75 43.88 53.06 85.92 31.18 58.98 49.71 54.45 75.28 56.87 108.76 139.91 22.50 113.30 118.09 148.07 36.71 66.73 92.73 78.50 70.25 55 E8a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E8b_E9b KnownJunction 0 15.78 60.32 23.15 10.09 7.64 19.59 7.64 12.90 12.41 10.77 15.85 61.22 25.00 76.05 33.01 51.87 50.49 50.53 20.05 44.55 31.63 39.07 18.18 57 ER8b ExonRegion 0 8.08 23.66 15.82 5.58 6.32 10.50 6.62 4.09 7.64 5.73 7.03 29.13 12.36 52.12 15.03 27.56 30.61 36.45 11.00 16.44 26.24 22.73 11.21 58 I8 Intron 0 6.74 10.76 9.73 20.72 10.06 5.98 14.62 10.77 5.43 4.98 5.19 7.39 10.63 6.88 9.67 13.56 10.89 14.48 13.44 8.97 10.65 9.59 9.23 59 I8_AR1 ActiveIntronRegion 0 6.87 7.67 7.11 16.38 9.10 5.88 16.01 10.32 5.72 4.81 5.58 7.96 10.96 6.76 9.85 15.81 12.95 15.20 14.71 9.40 11.56 8.93 12.25 60 I8_AR4 ActiveIntronRegion 0 10.02 22.98 18.68 35.97 11.03 7.28 12.93 16.11 6.18 7.83 7.08 9.41 8.85 9.26 10.29 10.44 11.09 19.22 13.13 12.02 14.13 12.41 7.17 61 E9_Aa NovelBoundary 0 10.15 17.83 16.47 4.69 12.14 13.46 9.54 8.01 3.27 4.54 2.32 0.00 6.66 4.30 11.00 4.19 13.56 26.82 17.69 3.26 8.65 7.59 11.61 62 ER9a ExonRegion 1 55.03 123.03 82.71 45.66 51.73 87.72 42.81 57.33 49.40 57.73 76.35 74.32 89.11 159.16 40.13 99.07 121.58 169.69 43.00 79.08 90.72 90.29 80.76 63 ER9b ExonRegion 0 118.88 139.49 150.55 106.42 80.20 98.43 70.21 109.84 77.64 67.46 108.85 126.13 126.61 214.44 85.61 118.22 202.72 204.76 83.84 111.20 106.19 120.26 113.71 64 E9_Da NovelBoundary 0 10.74 34.34 26.61 21.81 19.02 15.67 16.38 20.00 8.62 11.09 14.00 6.30 21.91 9.54 10.75 19.82 12.90 4.52 7.44 15.02 0.00 3.12 4.35 65 E9a_E10a KnownJunction 0 300.20 179.90 212.77 125.69 214.94 106.42 98.17 139.36 90.36 74.30 128.66 202.27 175.48 175.53 80.97 88.18 205.98 149.90 88.47 123.04 93.41 143.90 60.35 66 I9 Intron 0 21.75 13.01 6.37 5.91 15.05 8.88 4.36 2.50 1.43 0.99 3.37 5.83 12.36 5.21 6.75 4.03 5.76 0.53 3.09 4.54 0.43 5.25 3.42 67 I9_SR1 SilentIntronRegion 0 26.73 13.85 6.44 5.55 15.43 5.50 3.62 2.28 1.12 1.56 2.91 8.01 16.75 4.85 7.25 3.61 4.01 0.84 4.83 5.81 0.00 5.58 3.41 68 E10_Aa NovelBoundary 1 112.54 8.62 26.94 23.84 10.27 18.23 24.78 24.77 18.06 10.56 2.37 26.26 55.35 9.06 8.90 15.21 8.51 1.87 17.41 5.50 0.00 13.53 11.78 69 ER10a ExonRegion 0 465.41 237.56 215.57 148.57 152.34 132.93 101.16 132.55 98.07 94.44 123.77 215.13 255.11 170.77 105.54 106.02 196.28 110.31 99.38 112.24 91.64 171.53 92.19 70 E10_Da KnownBoundary 0 150.92 215.49 184.71 136.18 194.40 149.91 130.02 98.70 84.08 94.18 105.92 128.59 206.32 112.96 116.32 150.22 214.40 68.48 105.13 99.26 109.84 143.84 97.57 71 E10_Db KnownBoundary 0 37.12 59.27 11.83 4.13 145.84 50.43 89.21 17.83 1.79 3.33 34.59 44.11 56.49 69.28 50.07 51.87 28.33 17.41 47.72 22.82 12.54 83.77 43.28 72 E10_Dc KnownBoundary 0 15.63 49.33 2.84 1.73 37.52 33.05 43.50 0.00 2.55 1.48 8.05 27.76 46.26 49.03 28.43 12.65 13.93 9.74 32.75 9.27 0.00 39.86 33.12 73 ER10b ExonRegion 0 119.58 188.51 154.15 120.34 222.09 144.87 161.26 96.27 71.39 86.82 107.86 258.47 268.27 197.17 191.77 153.06 189.80 70.77 130.28 87.87 93.00 184.60 109.54 74 ER10c ExonRegion 0 66.50 126.83 99.13 73.52 167.59 101.63 127.59 73.32 44.92 56.74 76.71 173.63 154.52 140.61 141.40 97.45 129.95 46.19 98.24 61.59 57.41 137.07 82.23 75 ER10d ExonRegion 0 73.01 162.09 66.64 64.84 66.48 70.56 58.12 54.69 36.74 42.81 49.44 97.39 84.12 66.09 42.71 45.05 63.91 54.02 27.90 52.68 32.27 72.86 45.86 76 ER10e ExonRegion 0 10.58 8.13 3.06 2.73 6.69 3.67 3.97 3.46 1.85 0.57 0.00 0.00 0.00 0.00 4.35 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00