Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TCTA Gene 0 75.92 59.05 108.59 81.98 64.48 79.11 53.78 112.61 74.56 63.84 37.53 62.14 41.65 114.29 116.13 134.80 79.30 104.44 60.15 77.26 93.09 49.74 49.34 2 273590 Transcript 0 68.31 48.80 102.14 73.90 50.49 60.58 35.54 95.12 60.00 50.00 27.72 49.06 31.71 81.33 93.60 103.36 57.11 83.78 47.00 55.20 69.55 40.03 32.66 3 488385 Transcript 0 7.44 5.06 12.94 17.61 6.93 7.85 11.06 10.36 13.77 5.51 6.80 10.88 13.83 14.71 22.25 18.84 7.07 3.56 5.96 21.79 9.17 4.14 11.61 4 487432 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.84 5 482193 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 1.32 0.00 0.00 0.00 9.48 13.35 8.63 0.00 1.95 0.00 0.00 0.00 0.00 0.00 6 493381 Transcript 0 10.52 5.00 3.25 1.70 0.00 0.00 4.33 0.00 3.01 4.59 0.00 0.00 0.00 5.36 0.00 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 497786 Transcript 0 0.00 0.00 1.71 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.95 14.22 8.46 0.00 0.00 0.00 0.00 0.00 2.82 0.00 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 3.80 6.31 3.68 1.35 1.03 3.67 3.87 1.10 1.84 4.12 3.32 0.00 0.00 9.02 6.50 22.13 3.60 7.81 7.93 5.26 11.36 1.39 1.80 10 E1_Ac KnownBoundary 0 3.70 3.03 0.00 0.00 0.00 2.73 2.25 4.85 0.00 0.00 7.69 0.00 0.00 4.89 6.18 4.02 0.00 2.28 4.80 0.00 17.48 0.00 3.84 11 E1_Ad KnownBoundary 0 3.78 3.35 1.60 2.06 12.82 22.32 13.25 2.55 1.71 1.67 4.84 0.00 0.00 4.53 4.45 0.00 14.12 0.00 0.00 5.82 15.01 0.00 13.06 12 ER1c ExonRegion 0 6.35 5.24 6.69 0.68 9.26 22.01 10.85 7.31 0.76 5.12 12.42 0.00 0.00 11.43 10.71 13.95 13.20 7.60 9.31 5.40 35.34 2.56 10.96 13 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 5.37 0.00 0.00 0.00 0.00 0.00 4.77 2.49 0.00 0.00 3.15 0.00 0.00 14 E1_Af KnownBoundary 0 6.52 6.38 23.57 4.03 18.93 12.49 20.89 14.99 1.79 10.72 0.00 0.00 0.00 34.08 9.39 36.14 0.00 21.76 9.60 14.70 12.23 6.12 7.85 15 ER1d ExonRegion 0 11.76 8.36 13.62 1.36 13.68 36.47 19.57 13.64 1.24 9.43 12.24 0.00 0.00 16.60 17.41 33.68 16.50 14.58 18.05 9.69 43.83 8.80 14.68 16 ER1e ExonRegion 1 14.82 11.84 18.60 2.00 23.92 39.48 30.68 14.23 4.07 12.89 7.62 0.00 0.00 32.96 25.94 59.44 14.37 25.43 20.61 15.52 39.93 11.03 17.79 17 ER1f ExonRegion 0 29.78 17.46 51.12 28.68 12.37 25.06 25.10 43.55 38.26 37.31 13.90 19.22 9.59 74.86 68.80 89.54 41.43 68.66 36.78 45.69 64.71 22.69 30.10 18 E1_Da KnownBoundary 0 2.89 0.00 10.38 0.00 0.00 2.90 0.00 0.00 9.95 4.65 0.00 0.00 0.00 7.36 16.56 25.04 0.00 9.78 4.05 2.49 2.53 0.00 11.87 19 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 1.32 0.00 0.00 0.00 9.48 13.35 8.63 0.00 1.95 0.00 0.00 0.00 0.00 0.00 20 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.84 21 E1a_E2c KnownJunction 0 55.79 38.02 78.23 65.76 0.00 19.48 9.49 103.01 66.87 57.11 26.59 93.03 32.63 148.92 174.30 143.89 73.96 151.30 83.11 90.31 92.60 65.03 51.82 22 ER1g ExonRegion 0 3.19 0.82 4.85 1.66 3.39 2.95 3.78 3.32 5.10 4.77 1.22 8.98 1.22 5.97 8.24 8.68 1.12 1.14 2.77 5.78 1.25 0.46 2.36 23 E1b_E2a KnownJunction 0 0.00 0.00 1.71 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.95 14.22 8.46 0.00 0.00 0.00 0.00 0.00 2.82 0.00 24 E1b_E2c KnownJunction 0 10.52 5.00 3.25 1.70 0.00 0.00 4.33 0.00 3.01 4.59 0.00 0.00 0.00 5.36 0.00 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER2a ExonRegion 0 0.00 0.00 1.23 1.36 2.68 1.83 0.00 3.46 0.00 1.15 0.00 0.48 0.00 11.73 17.09 11.89 0.73 1.85 0.00 0.00 0.00 2.08 0.33 26 ER2b ExonRegion 0 2.50 2.21 2.59 8.26 6.21 3.54 4.20 5.71 2.42 2.05 6.56 9.71 2.94 5.92 10.24 15.35 3.90 5.25 1.05 3.81 4.45 1.16 4.34 27 E2_Ac KnownBoundary 0 3.33 0.00 3.28 11.49 4.24 5.62 19.96 6.49 0.00 3.17 2.68 6.30 6.82 7.06 14.09 3.85 8.60 6.72 4.24 3.26 5.62 3.12 3.84 28 ER2c ExonRegion 0 41.82 39.62 90.47 93.43 24.13 43.84 34.37 103.42 79.57 69.92 27.28 53.48 15.55 118.62 114.22 148.55 83.19 159.08 51.08 75.06 97.70 41.59 41.82 29 E2_Da KnownBoundary 0 7.48 5.72 10.91 12.29 3.99 5.79 1.85 4.35 6.34 4.51 2.63 0.00 0.00 7.12 13.35 12.30 9.44 6.05 0.00 12.08 3.15 2.82 0.00 30 E2a_E3a KnownJunction 0 39.34 23.29 95.12 90.80 83.79 115.16 62.58 123.18 71.09 64.82 29.48 42.46 6.82 114.49 88.26 107.92 91.07 142.23 48.47 68.65 109.16 29.33 27.49 31 E2_Db KnownBoundary 0 10.96 2.89 5.65 9.06 10.70 5.11 13.38 9.82 12.96 4.78 2.42 6.30 0.00 7.06 0.00 12.30 18.23 7.01 0.00 6.52 11.31 6.12 8.71 32 ER2d ExonRegion 0 10.95 2.65 11.35 12.44 6.63 6.54 9.10 7.59 12.30 6.68 4.20 3.01 1.02 7.20 9.71 15.51 17.80 9.72 0.00 8.88 8.05 5.53 5.75 33 ER2e ExonRegion 0 8.53 9.04 18.18 19.35 17.06 14.70 23.17 9.99 16.38 6.46 6.22 11.56 9.52 11.96 14.86 15.10 9.17 10.89 5.09 16.33 12.98 4.20 15.11 34 E2_Dc KnownBoundary 0 6.08 9.08 31.73 16.71 14.35 13.91 7.82 12.36 18.32 4.62 9.16 0.00 8.28 18.60 4.45 8.63 14.31 7.17 7.44 19.88 11.68 0.00 19.63 35 ER2f ExonRegion 0 7.44 5.06 12.94 17.61 6.93 7.85 11.06 10.36 13.77 5.51 6.80 10.88 13.83 14.71 22.25 18.84 7.07 3.56 5.96 21.79 9.17 4.14 11.61 36 E2_Dd NovelBoundary 0 6.67 2.50 26.79 22.91 43.29 25.95 12.32 8.75 17.07 4.24 2.47 0.00 13.64 14.54 21.51 8.46 4.49 5.55 0.00 14.06 11.18 5.45 8.19 37 I2 Intron 0 16.16 5.63 10.24 11.25 14.46 13.88 10.91 8.53 8.83 4.96 3.79 11.01 12.54 18.11 18.61 17.07 10.93 6.08 7.10 11.21 9.82 3.38 9.92 38 I2_AR2 ActiveIntronRegion 0 19.71 7.51 5.57 12.95 19.52 15.75 18.88 4.69 8.95 4.70 5.30 13.73 14.65 25.37 32.80 15.43 9.62 7.88 7.34 18.82 6.76 1.01 12.84 39 I2_AR3 ActiveIntronRegion 0 13.82 5.04 13.20 13.73 14.59 17.27 14.15 10.89 12.27 5.84 5.03 12.19 16.68 21.87 17.28 19.58 14.83 7.93 9.54 12.75 12.49 4.25 11.97 40 I2_SR1 SilentIntronRegion 1 3.50 0.49 2.32 5.18 0.00 0.48 4.40 5.34 3.68 3.39 0.76 1.41 7.14 7.77 24.03 10.47 1.87 2.25 5.54 7.72 4.74 2.49 2.17 41 I2_AR4 ActiveIntronRegion 0 22.37 7.01 10.91 9.33 15.37 11.80 4.56 8.28 5.07 4.71 2.22 11.00 6.21 11.79 15.02 17.07 8.34 3.80 3.66 6.84 9.62 3.83 7.42 42 E3_Aa NovelBoundary 0 60.90 37.16 37.85 30.43 64.01 78.31 55.03 9.04 11.75 13.05 10.16 13.65 0.00 38.44 34.37 18.20 22.53 20.98 8.75 12.08 13.78 0.00 11.18 43 ER3a ExonRegion 0 68.38 65.67 102.29 89.38 96.67 136.56 83.42 150.83 100.53 96.43 58.43 82.95 48.36 181.85 149.94 177.97 124.18 136.82 74.06 102.16 133.03 69.68 71.74 44 E3_Da KnownBoundary 0 4090.58 3765.65 5987.93 6517.69 3542.53 2830.70 4676.57 5759.81 5205.47 5301.39 1452.10 986.87 1162.91 779.57 1354.48 3391.76 3054.23 6952.69 2426.42 4400.19 2053.42 1532.80 3276.66 45 ER3b ExonRegion 0 133.03 125.43 103.42 79.15 112.00 95.25 123.44 142.16 96.25 73.36 63.10 108.73 114.84 189.18 152.64 201.62 147.12 134.62 112.95 168.93 141.97 75.91 119.69 46 E3_Db KnownBoundary 1 1233.48 1154.93 387.54 428.08 801.10 655.19 1040.92 432.63 366.29 334.46 243.17 507.32 525.45 390.43 517.22 987.26 808.79 595.10 801.25 990.97 457.96 451.05 775.78 47 ER3c ExonRegion 0 136.61 97.59 204.29 147.81 100.97 121.17 71.08 190.23 119.99 100.00 55.44 98.12 63.43 162.65 187.19 206.72 114.22 167.56 93.99 110.40 139.10 80.06 65.33 48 IG45 Intergenic 0 8.59 4.12 4.01 8.57 6.33 3.41 6.93 4.78 3.11 0.87 1.63 4.99 5.54 4.16 3.26 4.02 4.46 4.81 3.77 9.34 4.83 2.46 12.40 49 IG45_SR1 SilentIntergenicRegion 0 9.43 4.09 4.25 8.53 7.43 1.69 7.01 6.50 3.05 1.19 2.19 5.77 7.48 3.86 4.61 5.43 5.32 3.52 2.44 10.93 5.02 1.74 14.86 50 IG45_SR2 SilentIntergenicRegion 0 9.51 5.28 4.83 12.16 7.19 6.13 6.56 3.59 4.17 0.53 0.14 3.94 3.78 4.10 2.08 2.66 1.97 8.49 4.33 9.15 7.30 4.23 12.10