Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CSRNP1 Gene 0 12.73 0.41 93.67 5.09 9.35 3.30 4.03 38.54 64.57 8.17 23.95 9.73 8.63 34.32 21.84 35.35 75.46 1.78 9.73 0.80 80.15 178.50 173.74 2 444454 Transcript 0 0.12 0.00 2.75 0.30 0.00 0.00 0.07 0.86 1.37 0.06 1.18 0.24 0.00 0.52 0.32 0.83 2.02 0.00 0.71 0.00 1.84 3.01 4.55 3 318290 Transcript 0 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.02 0.00 1.12 0.00 0.00 0.26 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.20 5.37 4 273153 Transcript 0 0.45 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.09 0.36 0.00 0.00 0.00 0.38 0.00 0.00 0.35 0.00 0.00 0.00 0.32 0.00 0.31 5 ER1a ExonRegion 0 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.81 6 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.03 0.00 2.25 0.00 0.00 0.53 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.39 7.06 8 E2_Ab KnownBoundary 0 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.22 0.00 4.69 0.00 0.00 2.47 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 23.56 9 ER2b ExonRegion 0 3.15 0.00 20.90 0.13 4.98 3.41 4.99 5.80 15.03 1.28 11.24 0.16 0.00 7.50 9.08 19.48 23.42 0.00 3.56 0.00 31.01 74.50 83.38 10 E2a_E3b KnownJunction 0 0.00 0.00 46.07 1.47 0.00 2.33 0.00 9.86 22.86 0.00 19.43 0.00 0.00 2.47 10.38 23.24 33.38 0.00 0.00 0.00 17.79 52.72 11.69 11 ER3a ExonRegion 0 0.35 0.00 8.17 0.91 0.00 0.00 0.22 2.59 4.12 0.19 3.54 0.72 0.00 0.54 0.97 2.48 6.05 0.00 2.12 0.00 5.51 9.03 6.85 12 ER3b ExonRegion 0 3.26 0.00 82.12 4.25 3.99 0.00 3.14 33.95 54.41 5.46 40.00 8.51 7.55 31.00 22.77 24.68 98.30 1.03 9.83 0.00 83.89 120.70 115.77 13 E3_Da KnownBoundary 0 6.82 0.00 153.81 8.02 6.45 6.98 0.00 65.18 107.06 8.43 73.91 18.76 6.66 52.09 69.10 57.42 192.71 2.57 36.99 0.00 168.53 245.36 241.66 14 E3a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 15 ER3c ExonRegion 0 4.34 0.67 124.25 4.23 9.76 5.83 5.66 42.40 94.54 11.81 40.57 10.04 6.64 49.00 29.47 59.73 113.48 2.61 18.80 0.49 103.37 244.24 305.41 16 E3b_E4a KnownJunction 0 3.56 2.70 97.72 1.53 11.46 5.45 10.20 50.48 75.11 10.45 39.80 12.45 13.64 42.32 4.45 24.78 46.38 0.00 3.76 2.49 86.67 169.98 231.25 17 I3 Intron 0 8.61 0.17 25.22 0.52 3.63 0.00 1.46 5.89 13.88 0.87 1.15 1.77 0.72 1.04 0.69 1.76 5.87 0.00 0.27 0.00 10.64 15.89 15.92 18 I3_AR1 ActiveIntronRegion 0 15.97 0.00 22.05 0.00 5.25 0.00 1.52 10.73 13.21 2.14 0.76 0.00 3.36 2.10 0.80 2.33 7.95 0.00 1.25 0.00 15.02 26.78 31.78 19 I3_SR1 SilentIntronRegion 0 6.61 0.22 26.20 0.66 3.19 0.00 1.45 4.58 14.12 0.52 1.26 2.27 0.00 0.76 0.67 1.61 5.32 0.00 0.00 0.00 9.47 12.94 11.60 20 E4_Aa NovelBoundary 0 14.15 0.00 27.17 0.00 12.82 0.00 0.00 9.98 6.86 1.64 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 0.00 0.00 14.02 3.12 12.21 21 ER4a ExonRegion 0 8.97 0.32 130.13 4.30 14.06 3.78 6.25 40.65 90.46 14.21 36.66 14.39 13.47 53.62 22.64 46.42 122.16 1.73 9.69 0.90 131.28 233.61 182.74 22 E4_Da NovelBoundary 0 11.04 0.00 13.69 0.00 7.56 0.00 1.68 0.00 22.28 0.00 2.26 0.00 0.00 4.94 0.00 4.19 0.00 0.00 0.00 0.00 11.18 14.82 22.96 23 E4a_E5a KnownJunction 0 16.45 0.00 148.37 7.16 7.22 7.44 6.05 53.93 90.60 17.49 40.12 0.00 12.66 54.92 30.53 36.49 136.33 4.10 30.49 0.00 134.30 218.79 204.96 24 I4 Intron 0 5.28 0.00 8.93 0.39 2.82 0.53 1.65 4.69 10.06 0.49 2.04 0.00 0.74 5.05 2.27 4.27 6.33 0.26 1.22 0.00 18.16 20.97 36.60 25 I4_SR1 SilentIntronRegion 0 5.30 0.00 8.96 0.39 2.83 0.53 1.66 4.71 10.09 0.49 2.05 0.00 0.74 5.06 2.28 4.29 6.35 0.26 1.23 0.00 18.23 21.05 36.74 26 E5_Aa NovelBoundary 0 13.93 0.00 16.68 0.00 0.00 0.00 1.81 5.71 11.83 0.00 2.47 0.00 0.00 0.00 0.00 12.13 0.00 1.95 0.00 0.00 20.82 28.29 27.40 27 ER5a ExonRegion 0 16.10 0.33 182.88 10.75 14.56 3.95 6.58 63.19 108.53 14.49 39.45 17.44 16.14 61.63 40.98 59.15 140.97 3.68 15.78 2.14 146.78 285.33 260.55 28 E5_Da NovelBoundary 0 3.41 0.00 13.51 1.63 12.56 2.90 2.25 4.44 22.86 1.58 2.68 0.00 0.00 2.47 0.00 3.33 4.02 0.00 0.00 0.00 5.37 19.78 40.38 29 E5a_E6a KnownJunction 0 14.97 0.00 215.66 14.95 23.01 7.78 5.74 90.73 142.19 23.61 48.59 30.91 6.82 59.69 48.46 113.73 179.34 0.00 26.07 2.68 153.64 316.58 439.11 30 E6_Aa NovelBoundary 0 0.00 0.00 25.58 1.30 7.47 0.00 6.45 17.21 18.63 0.00 2.68 0.00 0.00 4.77 4.45 4.02 4.77 0.00 0.00 0.00 19.71 23.51 31.41 31 ER6a ExonRegion 0 26.57 0.23 177.30 13.38 19.11 9.48 5.54 81.10 138.43 17.39 50.14 26.09 21.39 72.07 42.12 80.09 133.75 2.97 25.03 1.49 171.67 373.32 371.54 32 E6_Ab KnownBoundary 1 22.52 0.00 163.74 6.99 22.75 17.77 1.81 80.67 124.01 9.35 34.85 12.60 26.95 86.64 22.13 53.92 116.50 1.62 9.41 3.13 151.54 333.42 330.95 33 ER6b ExonRegion 0 27.19 1.00 185.61 9.10 18.94 4.78 6.62 87.17 122.52 13.83 40.43 15.19 14.10 61.55 46.16 59.05 146.22 4.08 14.67 1.68 138.41 360.92 347.72 34 E6_Da KnownBoundary 0 24.67 2.83 98.19 3.93 12.31 5.45 0.00 37.34 42.24 10.69 7.42 17.41 31.82 26.13 35.60 57.34 18.05 4.73 27.67 2.81 4.63 308.62 294.76 35 ER6c ExonRegion 0 8.04 0.54 3.69 0.12 0.90 0.20 1.79 1.03 1.69 0.26 0.18 0.18 0.86 0.70 0.51 1.72 0.10 0.16 0.65 0.04 0.12 6.92 7.50 36 E6_Db KnownBoundary 0 0.00 0.00 11.12 1.93 7.64 0.00 0.00 0.00 13.66 0.00 5.00 0.00 0.00 4.71 6.06 3.67 3.83 3.61 4.24 0.00 12.42 20.82 49.25 37 ER6d ExonRegion 0 0.45 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.09 0.36 0.00 0.00 0.00 0.38 0.00 0.00 0.35 0.00 0.00 0.00 0.32 0.00 0.31 38 IG11 Intergenic 0 4.05 0.73 10.36 1.29 1.53 1.25 0.96 4.05 8.72 0.80 0.45 0.77 0.67 0.86 0.90 1.70 3.44 0.49 2.37 0.77 2.20 10.18 10.17 39 IG11_SR4 SilentIntergenicRegion 0 1.61 0.14 6.94 0.28 0.37 0.13 0.64 2.14 10.05 0.83 0.80 0.25 0.80 0.44 1.11 1.64 5.92 0.19 2.42 0.29 2.28 8.21 9.12 40 IG11_AR4 ActiveIntergenicRegion 0 6.88 1.50 15.03 0.00 0.83 0.77 1.88 6.23 7.85 0.59 0.62 2.20 1.73 1.63 1.27 0.92 3.06 0.60 3.26 1.97 1.55 23.21 12.46 41 IG11_AR3 ActiveIntergenicRegion 0 9.75 0.88 23.68 2.68 4.15 1.51 2.20 9.81 14.27 1.44 0.44 1.44 0.22 1.11 1.38 2.99 3.58 0.99 1.40 0.99 4.05 20.48 18.72