Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPCS1 Gene 0 131.29 82.17 138.54 103.63 127.27 128.28 97.80 99.31 58.99 75.64 195.94 326.08 252.12 266.57 530.13 316.80 196.64 51.80 113.73 89.81 114.38 204.45 79.36 2 423431 Transcript 0 0.53 1.03 2.73 1.79 1.68 1.15 2.14 2.26 1.15 1.50 5.79 5.00 3.86 5.36 4.62 10.02 5.73 9.60 3.20 4.27 8.79 2.62 4.77 3 233025 Transcript 0 0.91 0.75 0.20 0.30 0.88 2.70 1.59 0.08 0.07 0.49 1.53 0.00 0.58 3.25 4.58 7.42 3.84 0.93 2.53 0.40 1.87 2.73 0.84 4 448693 Transcript 1 32.84 14.47 9.97 10.93 14.24 19.30 20.22 12.29 6.71 8.69 13.70 23.52 31.69 34.22 37.29 51.10 12.41 5.18 10.62 9.10 3.78 10.01 9.22 5 426887 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 474945 Transcript 0 12.65 9.53 13.98 7.91 12.26 6.44 8.74 7.84 4.63 7.85 8.33 10.25 10.66 25.79 41.93 45.57 11.76 6.30 12.92 8.83 12.10 10.45 6.88 7 ER1a ExonRegion 0 1.06 2.05 5.47 3.57 3.36 2.29 4.28 4.52 2.30 2.99 11.59 10.00 7.72 10.72 9.24 20.03 11.46 19.20 6.40 8.54 17.59 5.25 9.54 8 E1_Da NovelBoundary 0 0.00 0.00 6.50 0.00 0.00 5.56 0.00 3.70 1.19 3.98 13.53 0.00 6.82 7.95 6.30 24.35 17.48 24.29 8.66 12.40 16.06 5.45 11.95 9 E1a_E2e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 Ix Intron 0 1.87 3.24 6.47 3.24 2.37 4.55 4.22 3.65 2.61 2.72 6.85 4.33 2.20 10.49 4.29 18.95 12.28 14.96 10.72 5.65 16.78 6.64 6.24 11 Ix_AR1 ActiveIntronRegion 0 1.89 3.26 6.51 3.25 2.39 4.58 4.25 3.67 2.62 2.74 6.89 4.36 2.21 10.56 4.32 19.07 12.35 15.07 10.79 5.69 16.90 6.69 6.27 12 E2_Aa NovelBoundary 0 7.56 2.63 10.50 9.49 0.00 2.21 8.79 11.91 7.44 15.58 10.69 0.00 12.66 16.19 8.90 4.10 4.77 34.07 14.12 15.34 29.28 3.06 8.62 13 ER2a ExonRegion 0 0.91 0.75 0.20 0.30 0.88 2.70 1.59 0.08 0.07 0.49 1.53 0.00 0.58 3.25 4.58 7.42 3.84 0.93 2.53 0.40 1.87 2.73 0.84 14 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 1.74 0.00 0.00 0.00 0.00 0.00 15 E2_Ac KnownBoundary 1 3.04 0.00 0.00 0.00 3.48 11.64 4.06 0.00 0.00 1.10 29.69 0.00 0.00 10.12 15.82 27.69 72.28 2.40 3.86 2.62 42.81 12.92 3.50 16 ER2b ExonRegion 1 78.31 50.84 29.41 10.90 99.00 201.72 109.89 13.83 9.88 21.79 83.11 0.00 4.69 71.46 243.71 172.38 92.43 36.95 22.30 53.19 55.09 83.34 76.35 17 ER2c ExonRegion 1 396.69 190.66 104.75 52.99 508.39 979.75 534.68 46.56 30.09 56.58 258.54 2.89 12.22 454.70 920.75 589.38 350.50 110.36 147.78 183.88 305.71 263.15 233.15 18 E2_Ad KnownBoundary 1 1134.50 469.65 229.86 117.77 1346.18 2317.81 1296.40 96.03 68.92 103.93 528.34 30.46 19.48 930.96 1641.89 1176.87 707.25 266.71 389.19 382.10 619.32 499.48 509.11 19 ER2d ExonRegion 0 278.12 129.37 129.96 69.27 353.60 499.94 300.10 92.27 60.49 84.72 285.76 114.68 103.89 403.82 730.07 610.59 318.14 135.31 170.89 139.94 313.88 160.13 140.49 20 E2_Da KnownBoundary 0 21.11 0.00 5.77 1.80 0.00 2.33 0.00 4.11 0.00 6.29 10.00 0.00 0.00 5.18 8.90 3.59 13.37 0.00 0.00 0.00 11.37 2.57 0.00 21 E2a_E2e KnownJunction 0 165.21 83.01 288.43 130.92 46.60 45.43 48.67 195.51 108.88 143.85 778.09 442.64 477.24 511.98 911.68 588.31 862.55 103.67 204.90 279.25 747.94 205.44 157.07 22 ER2e ExonRegion 0 12.65 9.53 13.98 7.91 12.26 6.44 8.74 7.84 4.63 7.85 8.33 10.25 10.66 25.79 41.93 45.57 11.76 6.30 12.92 8.83 12.10 10.45 6.88 23 E2_Ae KnownBoundary 0 20.97 6.45 25.52 13.62 32.43 16.69 13.91 8.38 4.77 12.52 4.74 72.77 49.83 42.03 64.78 79.89 21.51 2.57 29.65 27.48 17.79 0.00 7.68 24 ER2f ExonRegion 0 302.02 134.18 380.55 234.92 97.23 84.01 76.41 255.37 151.17 195.17 888.18 616.18 360.66 1378.57 2167.53 1303.10 1030.38 234.01 598.90 377.28 767.00 622.65 407.20 25 E2_Db NovelBoundary 1 83.94 13.42 35.33 13.42 21.65 18.85 28.53 32.82 15.28 12.52 10.74 29.26 33.44 29.61 60.08 162.35 23.28 34.07 4.80 21.73 3.15 20.94 31.33 26 E2b_E3a KnownJunction 0 307.24 192.60 449.87 301.93 152.46 168.88 127.72 287.97 192.50 211.46 744.03 616.10 400.30 1597.87 2404.98 1946.33 969.14 306.38 722.09 391.43 577.62 703.88 553.49 27 E2b_E4a NovelJunction 0 0.00 0.00 13.60 5.09 0.00 2.61 13.07 2.22 0.00 3.63 0.00 0.00 0.00 4.77 17.92 33.41 4.21 10.86 9.04 3.13 0.00 2.57 4.27 28 ER3a ExonRegion 0 321.15 255.97 422.72 299.68 615.94 456.13 283.95 298.17 198.84 236.63 664.52 572.53 515.58 949.05 1700.40 1524.36 819.23 314.65 512.81 307.65 558.25 557.66 346.76 29 E3_Da KnownBoundary 0 28.23 5.99 7.84 11.92 23.51 16.47 36.30 8.34 6.19 6.23 13.06 17.86 31.49 42.20 38.20 26.83 21.60 8.62 0.00 2.88 0.00 8.70 0.00 30 E3a_E4a KnownJunction 0 281.90 366.45 542.47 430.02 1996.10 1505.21 795.11 330.69 230.32 306.82 761.67 1076.45 1390.17 892.23 1810.38 1623.68 961.38 243.75 419.02 318.56 553.65 548.41 300.31 31 ER3b ExonRegion 0 32.84 14.47 9.97 10.93 14.24 19.30 20.22 12.29 6.71 8.69 13.70 23.52 31.69 34.22 37.29 51.10 12.41 5.18 10.62 9.10 3.78 10.01 9.22 32 E3_Db NovelBoundary 0 54.23 17.23 24.42 16.78 7.89 16.41 29.37 8.09 4.54 4.24 2.68 24.16 6.82 26.78 24.60 42.47 12.06 14.88 13.55 24.67 8.34 12.00 0.00 33 I3_AR1 ActiveIntronRegion 0 23.55 9.43 6.77 8.47 8.68 17.85 21.48 1.19 1.71 4.75 3.58 3.31 9.34 12.09 24.85 17.91 7.65 2.57 11.81 8.88 1.02 0.97 1.36 34 I3_AR2 ActiveIntronRegion 0 25.38 19.32 3.65 9.14 18.73 8.25 17.21 2.58 3.67 0.85 4.83 8.91 12.00 15.38 12.88 23.75 14.85 5.51 12.74 4.26 2.20 5.21 1.47 35 E4_Aa NovelBoundary 0 51.64 45.39 49.20 22.37 20.03 19.08 23.14 19.18 5.99 14.53 7.58 16.66 8.28 20.95 31.40 44.52 4.77 3.61 13.08 3.26 2.97 10.96 7.94 36 ER4a ExonRegion 0 441.07 317.29 619.26 486.22 416.94 393.98 331.32 440.63 261.67 325.43 801.00 1625.72 1159.20 994.00 2137.21 1043.55 731.22 140.38 402.66 338.27 324.73 920.32 263.61 37 E4_Da KnownBoundary 1 476.08 357.24 555.78 379.51 360.36 138.44 169.67 358.58 152.60 230.72 430.11 1541.90 1264.53 486.32 1058.04 566.77 367.74 43.86 214.31 238.92 55.72 1034.48 196.51 38 ER4b ExonRegion 1 292.68 149.29 190.11 146.97 153.04 63.58 108.39 148.77 71.39 108.72 150.72 734.44 730.73 202.46 605.77 223.86 106.30 12.63 81.87 97.02 11.63 325.92 51.90 39 ER4c ExonRegion 1 120.17 32.76 23.15 15.45 30.03 24.45 29.86 15.36 10.29 10.70 19.76 197.71 158.42 49.08 148.61 32.69 14.30 1.03 7.08 17.49 1.22 34.73 9.46 40 IG4 Intergenic 0 33.67 54.98 27.59 37.69 56.03 19.93 27.44 26.08 18.25 13.77 7.79 20.89 12.04 12.41 18.41 20.96 6.82 10.33 21.11 18.61 5.84 20.77 16.97 41 IG4_AR1 ActiveIntergenicRegion 0 7.33 6.99 1.19 1.21 11.31 1.32 3.64 1.66 3.39 0.00 0.00 18.96 7.07 6.40 11.32 6.15 2.37 0.00 3.95 2.73 2.76 5.69 0.00 42 IG4_SR2 SilentIntergenicRegion 0 11.36 22.96 15.67 21.20 26.40 9.05 13.68 16.94 9.13 8.35 7.62 26.51 6.88 6.21 10.51 4.39 3.30 4.17 7.33 11.91 0.00 9.54 8.26 43 IG4_AR2 ActiveIntergenicRegion 0 44.56 54.31 30.68 36.87 62.46 26.42 26.05 28.97 18.76 14.28 7.02 19.15 16.36 12.36 19.69 19.31 7.75 11.52 17.85 23.79 5.24 18.68 15.76 44 IG4_SR3 SilentIntergenicRegion 0 16.11 46.87 8.19 17.02 52.93 18.34 19.96 14.63 8.92 6.57 5.42 9.08 12.01 10.10 7.50 23.20 6.44 6.94 24.40 12.61 3.06 34.40 14.40 45 IG4_SR4 SilentIntergenicRegion 0 42.20 88.59 41.01 62.08 77.35 23.37 43.58 37.22 28.40 21.57 12.00 27.28 12.08 17.82 26.18 34.38 9.41 15.52 35.92 21.75 10.46 32.15 27.46 46 IG4_AR4 ActiveIntergenicRegion 0 31.75 29.83 45.54 32.94 60.20 28.12 38.84 34.28 22.85 14.72 13.53 18.76 9.38 24.36 22.73 24.77 3.30 13.24 30.26 31.21 2.20 16.67 28.39 47 IG4_AR5 ActiveIntergenicRegion 0 15.66 10.17 1.96 7.36 44.42 11.74 25.95 8.64 1.98 3.67 4.25 0.00 0.00 6.50 0.00 13.67 0.00 0.00 10.83 19.57 0.88 7.92 15.27