Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ABHD14B Gene 0 93.82 17.62 52.22 36.17 36.10 22.41 17.47 38.45 26.51 19.39 164.11 62.64 81.85 187.25 133.66 118.82 88.77 31.35 60.16 17.89 110.28 50.66 48.16 2 483233 Transcript 0 15.62 3.21 1.19 0.47 1.19 0.31 0.29 1.19 0.56 0.42 2.33 0.00 0.78 4.17 3.81 0.66 1.45 1.64 2.65 0.69 3.07 1.02 0.48 3 487005 Transcript 0 0.54 0.00 3.05 3.82 2.06 0.00 0.60 1.88 2.37 1.01 2.74 0.00 0.00 0.86 2.48 1.72 0.85 3.80 3.52 1.33 1.44 0.77 1.72 4 473912 Transcript 0 6.35 4.79 5.24 5.78 3.31 9.69 11.42 5.23 3.05 1.98 8.63 3.27 0.00 25.43 13.78 21.38 17.39 8.91 5.28 7.06 8.80 4.08 7.83 5 361143 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 315851 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 315877 Transcript 0 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 439982 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 395008 Transcript 0 4.99 1.06 10.94 6.18 6.29 4.06 3.70 4.81 6.35 6.93 12.28 6.45 2.95 16.69 5.79 11.54 14.24 5.90 6.56 3.61 8.07 3.68 3.55 10 488257 Transcript 0 0.01 0.00 0.14 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 1.36 11 461108 Transcript 0 13.31 8.02 22.64 14.18 7.42 13.87 6.80 12.55 6.32 9.51 16.41 5.51 5.05 37.48 25.41 22.54 18.31 26.05 15.47 12.54 17.25 4.03 9.44 12 ER1a ExonRegion 0 2.07 1.49 3.56 0.52 0.00 0.00 0.00 1.26 0.45 1.25 2.80 0.00 0.00 1.68 6.58 0.00 1.61 4.93 0.00 2.08 5.92 3.05 1.43 13 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 Ix Intron 0 3.65 6.51 14.40 13.01 5.27 11.30 2.28 14.60 10.88 8.42 1.90 0.00 0.95 8.54 10.97 5.13 3.25 16.97 10.99 13.63 3.26 3.08 2.17 15 Ix_SR1 SilentIntronRegion 0 1.54 6.79 8.60 9.39 0.99 6.84 1.63 15.71 11.00 9.30 1.95 0.00 0.56 6.20 8.36 4.68 2.33 14.10 13.19 10.41 3.69 3.10 1.63 16 Ix_AR1 ActiveIntronRegion 0 5.43 6.41 19.37 16.19 8.86 15.12 2.86 13.95 10.98 7.85 1.90 0.00 1.29 10.61 13.30 5.58 4.06 19.57 9.39 16.49 2.96 3.10 2.65 17 ER2a ExonRegion 0 0.54 0.00 3.05 3.82 2.06 0.00 0.60 1.88 2.37 1.01 2.74 0.00 0.00 0.86 2.48 1.72 0.85 3.80 3.52 1.33 1.44 0.77 1.72 18 E2_Ab KnownBoundary 0 0.00 0.00 9.34 3.06 0.00 0.00 2.25 2.34 5.84 1.50 0.00 0.00 0.00 0.00 8.90 14.53 0.00 1.74 8.47 2.49 0.00 2.39 4.35 19 ER2b ExonRegion 0 0.00 0.00 4.20 2.88 1.76 0.00 0.20 0.28 3.02 0.67 1.93 0.00 0.00 0.02 1.24 2.95 0.15 3.73 7.75 0.80 2.46 0.09 1.38 20 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 4.36 0.00 5.39 0.00 0.00 5.81 0.00 0.00 21 E2_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 2.12 0.00 11.02 4.68 0.00 0.00 0.00 5.87 0.00 3.41 22 ER2c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 2.00 0.00 11.43 4.06 4.41 0.00 0.00 9.15 0.00 2.26 23 ER2d ExonRegion 0 5.14 0.23 1.19 0.00 5.73 2.20 0.49 0.54 2.29 1.80 11.49 0.00 0.00 15.64 8.12 15.54 11.51 1.43 0.82 1.76 14.10 0.83 7.05 24 E2_Ae KnownBoundary 0 3.26 0.00 0.00 0.00 8.40 0.00 0.00 0.00 1.71 0.00 13.21 0.00 0.00 14.24 4.45 4.27 8.98 0.00 0.00 3.13 11.92 0.00 0.00 25 E2_Af KnownBoundary 0 51.49 8.02 4.08 1.30 7.47 22.77 5.87 5.30 8.13 0.00 38.96 0.00 12.01 37.44 54.39 22.99 47.87 5.84 27.01 5.31 25.21 3.12 29.71 26 ER2e ExonRegion 1 51.01 6.51 2.82 1.50 15.52 22.74 6.36 6.91 7.04 3.33 55.28 0.00 0.00 50.02 69.63 39.23 52.81 9.79 30.26 11.06 43.41 5.83 36.41 27 ER2f ExonRegion 1 146.76 16.41 16.56 9.18 31.39 49.38 21.75 20.93 20.60 21.91 213.90 6.73 3.69 139.59 172.62 181.46 167.99 45.47 115.75 38.83 186.37 59.42 107.87 28 E2a_E3a KnownJunction 0 3.48 0.00 9.11 3.50 3.74 0.00 3.53 1.97 4.72 5.88 5.00 0.00 0.00 12.30 0.00 3.50 7.48 2.57 0.00 0.00 4.82 0.00 0.00 29 E2a_E3b KnownJunction 0 34.52 0.00 15.91 7.36 0.00 9.77 1.68 21.28 16.70 20.93 35.85 0.00 0.00 33.37 32.26 24.52 15.24 39.01 12.52 5.11 32.37 6.12 0.00 30 E2a_E6a KnownJunction 0 0.00 5.53 1.83 0.00 0.00 0.00 1.77 0.00 2.84 4.32 2.37 0.00 0.00 2.47 10.75 3.93 0.00 4.31 0.00 0.00 2.53 9.00 4.10 31 Ix_SR2 SilentIntronRegion 0 29.44 15.91 0.00 1.18 64.35 37.71 32.99 0.00 0.00 0.00 12.32 29.89 40.85 26.85 20.47 40.48 8.61 3.21 15.69 16.65 5.75 4.83 20.42 32 E3_Aa NovelBoundary 0 31.04 16.25 21.70 33.30 37.78 13.63 17.62 5.87 5.15 11.23 20.32 31.21 14.28 37.61 28.18 8.12 8.70 8.79 35.39 16.94 5.62 2.33 28.08 33 ER3a ExonRegion 0 6.50 2.13 12.77 8.86 8.84 8.12 3.86 7.66 7.97 7.99 19.57 12.90 5.89 21.08 11.58 19.59 20.99 9.24 13.12 7.22 11.31 7.35 7.11 34 E3_Ab KnownBoundary 0 0.00 0.00 5.82 9.62 0.00 8.23 6.76 8.09 6.74 2.85 20.11 0.00 12.17 7.36 8.90 14.01 17.58 6.43 4.14 5.82 6.18 6.25 10.67 35 ER3b ExonRegion 1 13.11 1.90 21.93 9.84 7.35 4.98 5.31 16.90 13.44 13.43 93.05 6.75 8.77 111.93 94.27 72.84 66.41 23.14 37.70 10.74 87.44 27.76 28.31 36 E3_Da KnownBoundary 0 7.04 5.79 3.67 8.96 0.00 0.00 10.91 6.45 5.73 1.26 2.21 0.00 0.00 0.00 5.81 10.85 8.79 5.14 0.00 0.00 4.82 2.39 11.61 37 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E3a_E6a KnownJunction 0 24.30 0.00 55.26 20.14 0.00 0.00 4.50 26.70 19.53 18.80 176.68 44.11 38.80 208.49 129.43 102.88 148.01 24.58 57.13 11.44 147.09 37.17 23.56 39 E3a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER3c ExonRegion 0 6.35 4.79 5.24 5.78 3.31 9.69 11.42 5.23 3.05 1.98 8.63 3.27 0.00 25.43 13.78 21.38 17.39 8.91 5.28 7.06 8.80 4.08 7.83 41 E3_Db NovelBoundary 0 10.15 3.35 22.94 6.56 0.00 11.24 5.92 6.45 5.82 8.43 12.37 0.00 6.82 31.55 19.16 26.32 23.38 5.26 0.00 12.02 2.66 2.63 4.27 42 Ix Intron 0 8.75 8.13 16.61 13.44 5.16 12.13 5.84 3.91 3.81 3.53 13.32 4.74 6.50 29.84 17.93 23.76 11.83 8.99 9.22 12.02 10.02 3.16 8.10 43 Ix_AR1 ActiveIntronRegion 0 8.80 8.17 16.70 13.51 5.17 12.20 5.87 3.93 3.83 3.55 13.39 4.76 6.54 29.99 18.01 23.88 11.89 9.04 9.26 12.09 10.07 3.18 8.14 44 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 Ix Intron 0 13.74 6.60 17.78 11.30 6.20 21.26 9.82 7.17 6.83 0.00 13.44 0.00 3.58 29.63 12.74 26.18 16.83 5.96 5.91 10.85 8.15 4.83 5.45 47 Ix_AR1 ActiveIntronRegion 0 13.86 6.66 17.91 11.40 6.26 21.45 9.91 7.23 6.89 0.00 13.57 0.00 3.61 29.90 12.86 26.42 16.99 6.02 5.96 10.93 8.21 4.87 5.50 48 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER5a ExonRegion 0 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E6_Aa NovelBoundary 0 24.30 30.98 30.81 33.10 15.53 8.63 4.11 19.84 3.53 8.49 22.22 18.01 0.00 48.21 18.54 28.28 16.92 16.75 17.13 11.44 16.99 20.76 13.06 51 ER6a ExonRegion 0 26.42 9.35 69.17 21.12 13.21 17.81 15.27 26.99 18.19 19.94 176.55 34.43 37.75 276.65 166.35 122.67 118.25 23.39 52.56 17.64 184.54 51.55 40.26 52 E6_Ab KnownBoundary 0 27.04 23.75 97.60 41.82 27.93 57.13 35.02 32.12 22.71 22.99 166.20 28.36 40.58 249.40 134.25 108.86 104.16 34.53 47.34 24.16 165.63 48.31 43.19 53 ER6b ExonRegion 1 28.71 17.79 74.08 35.38 15.27 26.51 17.98 42.06 33.86 31.25 177.42 24.98 38.20 268.86 153.59 127.55 139.94 43.42 56.14 24.87 152.15 46.92 35.73 54 E6_Da KnownBoundary 1 69.05 14.80 87.52 42.88 23.26 27.82 17.89 51.71 56.28 34.65 281.60 19.36 81.65 377.30 245.87 289.07 225.62 61.89 110.97 50.43 217.77 90.01 74.10 55 E6a_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER6c ExonRegion 1 107.16 14.82 88.74 45.84 21.90 28.11 21.48 55.40 45.11 28.88 284.95 38.97 51.90 397.55 260.35 232.14 185.81 78.68 104.57 43.92 241.13 74.68 67.77 57 E6_Ac KnownBoundary 1 207.96 24.47 118.80 56.34 42.28 37.93 14.13 63.95 44.47 28.18 301.08 51.62 35.06 405.26 271.83 262.32 161.76 109.35 89.70 64.43 225.73 68.03 99.11 58 ER6d ExonRegion 1 180.81 13.94 113.04 53.03 44.15 29.05 21.99 71.76 49.03 35.21 333.94 78.63 60.97 463.51 266.03 284.85 180.61 82.42 90.56 39.74 259.72 88.44 86.53 59 E6_Db KnownBoundary 0 20.00 11.25 32.38 12.79 26.83 8.35 5.83 9.45 8.74 12.89 13.53 13.95 0.00 35.02 13.35 19.65 13.56 18.82 16.94 8.82 10.93 6.12 15.96 60 E6b_E6d KnownJunction 0 290.13 18.48 108.63 42.19 49.58 35.83 27.20 79.11 49.88 35.32 355.98 85.38 99.83 457.42 246.37 316.07 168.58 47.22 71.34 19.18 274.91 78.44 57.96 61 ER6e ExonRegion 0 13.31 8.02 22.64 14.18 7.42 13.87 6.80 12.55 6.32 9.51 16.41 5.51 5.05 37.48 25.41 22.54 18.31 26.05 15.47 12.54 17.25 4.03 9.44 62 E6_Ad KnownBoundary 0 23.63 3.35 12.92 6.83 6.45 7.72 5.96 13.14 8.07 11.17 7.37 6.00 13.64 32.49 31.65 19.40 17.39 11.57 12.89 15.02 14.46 2.27 15.11 63 ER6f ExonRegion 0 320.37 53.71 147.39 113.95 114.89 67.60 56.01 124.90 86.25 56.68 544.90 178.61 238.67 530.75 368.72 381.79 266.82 85.32 187.18 44.56 316.02 176.68 151.13 64 E6_Dc KnownBoundary 0 834.89 179.24 126.05 135.21 172.24 139.35 98.92 124.33 107.58 75.75 514.24 415.79 579.02 553.42 369.12 476.29 272.65 75.32 201.32 38.61 364.92 120.51 180.20 65 ER6g ExonRegion 0 197.51 40.91 112.36 78.39 88.06 42.85 34.08 76.36 49.25 35.85 312.05 192.29 256.07 404.08 301.36 212.73 158.94 46.96 113.22 32.15 214.80 93.30 93.14 66 E6_Dd KnownBoundary 0 219.74 35.32 40.92 27.74 16.64 22.26 8.21 26.16 8.45 10.66 62.17 13.80 46.10 93.77 61.69 41.27 9.54 2.53 17.60 15.08 39.11 15.25 24.16 67 E6_De NovelBoundary 0 263.38 54.40 0.00 1.53 29.88 5.17 14.31 1.68 0.00 0.00 26.01 17.86 45.29 117.37 72.93 15.30 38.43 0.00 30.97 3.26 17.30 13.17 4.35 68 ER6h ExonRegion 0 200.70 41.56 19.50 13.45 26.76 13.00 5.70 17.74 3.17 6.28 45.04 15.81 48.53 111.57 66.85 36.96 26.41 1.85 34.62 7.31 32.29 12.50 21.96 69 ER6i ExonRegion 0 142.71 30.36 9.37 6.62 20.45 6.03 3.22 10.49 2.47 2.38 25.13 8.04 24.12 66.47 32.95 27.39 24.99 0.92 27.30 4.26 19.05 7.74 12.17 70 ER6j ExonRegion 0 44.80 8.13 0.00 0.91 3.57 0.92 0.88 2.30 1.24 0.00 4.19 0.00 2.35 10.83 4.84 1.98 2.75 0.00 7.96 0.00 3.31 0.00 0.00 71 Ix Intron 0 7.85 60.87 100.71 79.24 37.98 62.25 36.20 103.15 73.88 80.46 7.52 4.85 4.09 11.99 8.00 4.77 3.45 173.39 66.20 122.63 50.69 28.18 29.76 72 Ix_AR4 ActiveIntronRegion 0 2.06 13.74 46.97 37.31 8.56 18.26 8.08 53.90 37.31 39.96 2.67 0.00 0.00 8.35 3.92 5.05 2.17 122.09 58.40 68.83 33.28 14.01 14.68 73 Ix_SR3 SilentIntronRegion 0 3.24 9.19 112.06 77.09 4.60 26.57 13.09 92.18 71.82 86.73 10.55 1.59 0.00 10.48 8.70 6.93 5.25 165.35 52.04 128.38 39.92 19.10 22.86 74 Ix_AR3 ActiveIntronRegion 0 4.72 41.90 106.24 88.31 26.55 49.22 28.32 101.23 69.56 78.46 8.07 7.35 5.64 11.06 9.24 3.82 4.05 157.20 69.85 117.10 51.77 26.62 28.82 75 Ix_SR2 SilentIntronRegion 0 8.55 53.16 94.98 70.53 49.43 78.03 46.33 95.12 88.64 85.43 8.24 7.28 6.65 13.48 5.23 4.02 3.46 199.46 69.06 144.52 47.81 33.44 33.02 76 Ix_AR2 ActiveIntronRegion 0 4.93 39.39 56.63 39.87 22.78 51.45 26.31 56.36 52.40 56.43 6.39 1.65 1.48 11.84 6.28 3.99 2.59 137.96 44.53 100.22 42.02 21.21 21.30 77 Ix_SR1 SilentIntronRegion 0 16.75 148.25 175.26 137.94 80.32 113.48 66.87 187.20 108.16 129.29 7.05 1.42 3.65 14.86 12.34 9.14 4.30 268.22 96.66 158.65 65.82 42.50 50.08 78 Ix_AR1 ActiveIntronRegion 0 27.77 194.89 153.06 125.28 108.15 114.45 80.06 209.74 114.49 114.97 8.19 5.68 4.10 13.54 8.68 7.06 1.46 234.47 85.37 160.26 75.70 43.24 41.72 79 Ix Intron 0 14.41 52.56 75.51 58.79 32.04 68.56 45.62 67.68 38.05 45.64 5.66 4.67 2.99 7.26 5.87 3.33 2.27 138.73 39.80 81.02 40.64 14.54 18.22 80 Ix_AR2 ActiveIntronRegion 0 8.54 40.57 42.16 35.57 23.10 49.19 43.41 44.14 25.49 30.66 2.07 1.02 0.00 8.93 0.91 2.35 1.46 93.66 25.93 71.75 29.95 10.78 11.77 81 Ix_SR1 SilentIntronRegion 0 9.19 25.69 80.55 54.32 41.05 57.56 33.78 60.69 41.59 48.87 8.16 6.12 0.97 5.29 9.98 2.25 0.00 139.32 36.32 91.88 34.59 14.99 25.07 82 Ix_AR1 ActiveIntronRegion 0 17.24 61.78 84.39 66.64 32.86 76.67 48.85 76.17 41.08 49.46 6.21 5.45 4.30 7.21 6.47 3.85 2.99 152.10 44.66 81.66 45.11 15.58 18.72 83 ER7a ExonRegion 0 0.03 0.00 0.58 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 1.67 84 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.79