Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MAPKAPK3 Gene 0 38.29 18.03 55.76 19.35 22.84 17.50 15.83 24.34 17.66 15.12 68.18 16.99 35.96 95.70 102.38 68.26 44.87 31.70 31.39 16.36 132.12 62.46 60.89 2 486712 Transcript 0 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 3 446044 Transcript 0 2.12 0.00 0.11 0.00 0.00 0.72 0.70 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.97 0.00 0.00 0.00 1.50 0.69 0.00 4 497283 Transcript 0 4.56 0.49 0.36 0.78 4.40 0.66 0.47 4.26 1.33 0.79 0.00 0.29 0.00 1.11 1.90 0.32 0.83 0.08 0.00 0.10 0.48 0.00 0.24 5 430409 Transcript 0 9.81 1.87 1.90 1.83 2.72 1.53 1.81 0.96 0.24 1.98 9.78 0.00 1.42 13.22 16.06 11.86 2.33 4.06 3.45 2.05 10.55 4.05 6.79 6 357955 Transcript 0 13.04 8.62 5.65 1.50 8.06 5.05 5.43 2.38 2.92 2.26 6.79 0.00 0.00 23.78 28.18 23.75 7.85 20.89 12.14 0.00 20.39 4.78 19.46 7 457064 Transcript 0 1.86 0.08 0.05 0.56 0.09 0.78 0.05 0.03 0.73 0.39 0.12 0.00 0.00 1.40 2.00 0.26 1.37 0.75 0.10 0.00 0.26 1.70 1.39 8 451680 Transcript 0 0.00 3.35 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 2.47 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 10 E1_Da NovelBoundary 0 114.69 0.00 4.14 3.26 20.71 7.84 8.70 3.94 4.05 1.37 0.00 0.00 0.00 22.07 13.35 0.00 4.02 4.10 0.00 0.00 2.59 3.12 8.37 11 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 2.14 0.00 0.32 0.00 0.00 2.15 0.78 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 2.92 0.00 0.00 0.00 0.00 0.00 0.00 13 E2_Ab KnownBoundary 0 3.33 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2b ExonRegion 0 1.02 0.77 0.86 0.00 0.00 0.00 0.00 1.51 0.31 0.01 1.46 0.00 0.00 1.12 0.77 0.44 3.99 0.15 0.00 0.00 0.00 0.00 0.00 15 E2a_E4a KnownJunction 0 0.00 0.00 2.99 0.00 0.00 0.00 0.00 4.11 1.79 0.00 0.00 0.00 0.00 0.00 0.00 8.29 4.58 1.74 0.00 0.00 0.00 0.00 0.00 16 ER3a ExonRegion 0 1.95 0.28 0.25 0.56 1.63 1.03 0.73 1.49 0.51 1.01 0.00 0.00 0.00 0.18 0.00 0.41 0.00 0.00 0.00 0.29 0.60 0.00 0.40 17 E3a_E4a KnownJunction 0 6.74 0.00 0.00 0.00 4.33 0.00 0.00 7.80 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER4a ExonRegion 0 8.78 4.22 5.59 3.64 5.41 1.43 0.21 10.72 4.06 2.60 0.00 0.64 4.59 1.35 3.57 4.76 10.22 1.54 1.88 0.00 0.49 0.00 1.58 19 E4a_E5a KnownJunction 0 20.15 3.03 5.38 4.73 8.49 6.59 2.03 13.27 3.15 1.16 0.00 6.30 0.00 5.00 4.45 4.27 4.39 1.87 0.00 0.00 3.15 0.00 0.00 20 ER5a ExonRegion 0 20.47 2.99 5.86 3.79 4.74 8.90 1.06 10.93 6.24 1.97 1.44 1.11 1.81 4.57 5.96 4.04 12.54 1.71 1.34 0.00 1.78 0.97 0.00 21 E5_Da KnownBoundary 0 13.11 0.00 2.66 10.42 0.00 2.90 0.00 12.49 10.76 4.38 2.68 0.00 0.00 4.94 0.00 4.19 4.77 4.19 0.00 0.00 8.28 0.00 0.00 22 ER5b ExonRegion 0 7.62 2.52 5.53 6.10 4.33 4.04 0.00 7.56 6.75 3.77 2.01 0.81 3.34 11.18 5.26 5.62 12.76 3.95 1.38 0.00 3.83 1.80 3.53 23 E5_Db KnownBoundary 0 3.78 0.00 3.64 1.80 10.44 0.00 0.00 2.42 6.31 1.40 0.00 6.30 0.00 9.77 0.00 4.19 4.77 1.82 0.00 0.00 2.97 0.00 0.00 24 E5b_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 25 ER5c ExonRegion 0 4.98 1.19 0.83 1.78 7.24 0.94 0.68 3.49 3.47 0.24 0.00 0.87 0.00 3.15 5.71 0.54 2.50 0.24 0.00 0.00 0.82 0.00 0.33 26 I5_AR2 ActiveIntronRegion 0 10.97 6.10 1.23 2.73 8.03 3.67 6.98 6.13 0.00 1.15 1.05 0.00 0.00 2.51 2.90 2.97 3.30 0.00 0.00 0.00 0.00 0.00 0.00 27 I5_SR1 SilentIntronRegion 0 13.58 6.30 0.69 1.10 4.11 3.40 3.71 1.85 0.00 1.15 0.00 2.64 6.41 2.85 1.34 3.48 1.69 0.00 0.00 0.00 0.00 0.00 0.00 28 ER6a ExonRegion 0 12.38 3.00 0.95 2.28 3.88 2.75 5.13 0.00 0.96 0.72 15.85 0.00 0.00 25.62 24.66 30.24 9.33 5.04 4.54 8.19 21.98 11.77 22.47 29 E6_Ab KnownBoundary 0 41.93 8.35 7.48 4.00 7.05 7.67 15.32 0.00 3.30 2.85 31.64 0.00 0.00 46.74 52.17 58.79 21.13 25.00 16.57 14.83 75.49 29.51 59.84 30 ER6b ExonRegion 1 31.79 18.48 6.72 3.07 12.71 13.62 15.98 1.67 1.90 2.21 22.40 0.00 0.00 42.55 70.15 65.65 15.21 14.02 19.85 9.65 62.77 33.49 72.37 31 E6a_E7b KnownJunction 0 13.04 8.62 5.65 1.50 8.06 5.05 5.43 2.38 2.92 2.26 6.79 0.00 0.00 23.78 28.18 23.75 7.85 20.89 12.14 0.00 20.39 4.78 19.46 32 E6b_E7b KnownJunction 0 18.37 0.00 3.13 3.66 4.33 2.50 0.00 2.09 0.00 2.61 13.11 0.00 5.68 14.48 24.11 8.29 0.00 7.13 4.80 0.00 8.46 0.00 0.00 33 ER6c ExonRegion 0 6.35 2.44 3.51 1.36 2.68 0.86 2.12 1.73 0.00 2.29 10.18 0.00 0.00 12.78 15.47 8.92 0.00 4.07 4.46 0.00 11.75 4.44 4.70 34 ER7a ExonRegion 0 1.86 0.08 0.05 0.56 0.09 0.78 0.05 0.03 0.73 0.39 0.12 0.00 0.00 1.40 2.00 0.26 1.37 0.75 0.10 0.00 0.26 1.70 1.39 35 E7_Ab KnownBoundary 0 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 3.59 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER7b ExonRegion 1 9.01 7.89 23.30 6.73 8.06 6.37 8.95 10.60 11.12 12.52 60.66 5.77 10.68 77.09 74.12 47.48 27.69 29.84 18.55 9.46 121.33 41.51 36.45 37 E7a_E8a KnownJunction 1 20.08 25.72 45.77 14.68 12.56 30.10 32.86 24.60 18.81 29.36 87.23 25.06 21.91 185.89 65.64 58.10 54.42 50.57 12.61 20.71 171.74 57.80 24.50 38 ER8a ExonRegion 0 47.50 24.78 68.20 28.80 16.76 16.95 18.50 34.51 29.47 30.29 148.35 31.76 79.90 174.08 184.40 132.43 98.74 78.57 69.05 32.20 300.81 117.42 95.63 39 E8a_E9a KnownJunction 0 50.53 26.57 114.40 40.65 23.68 7.33 23.58 52.49 49.45 39.46 173.25 106.98 136.19 226.97 260.83 147.74 113.98 104.50 75.48 35.79 400.26 109.42 98.00 40 ER9a ExonRegion 0 44.87 24.37 100.41 42.31 23.83 12.55 16.42 59.57 48.59 37.97 163.49 49.22 117.25 280.17 241.61 168.45 102.23 78.80 117.71 37.09 313.98 169.44 111.50 41 E9a_E10a KnownJunction 0 65.12 34.14 125.16 66.43 17.74 27.54 17.40 83.54 58.85 45.83 189.47 90.18 109.73 268.70 229.19 127.83 119.21 64.83 108.33 39.37 389.01 197.91 117.97 42 ER10a ExonRegion 0 49.08 40.11 141.97 65.49 31.17 29.98 18.24 78.23 53.34 44.41 175.43 57.31 136.48 191.10 184.23 110.49 95.11 59.75 63.27 51.86 278.52 138.22 106.12 43 E10a_E11a KnownJunction 1 69.57 51.70 169.24 74.32 38.71 47.25 34.01 56.72 47.77 34.95 153.72 65.72 239.27 252.22 211.76 137.31 95.84 95.47 92.33 44.74 262.99 148.67 126.76 44 E10a_E12a NovelJunction 0 0.00 0.00 0.00 0.00 7.05 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 13.19 0.00 0.00 3.65 0.00 0.00 0.00 5.13 2.57 0.00 45 ER11a ExonRegion 0 49.67 43.41 155.15 58.05 60.07 48.14 32.27 65.95 55.19 37.30 217.47 84.25 246.19 273.74 271.06 209.80 126.53 103.46 115.47 47.79 358.37 224.42 155.12 46 E11a_E12a KnownJunction 0 29.56 25.59 137.93 60.00 51.36 31.40 32.72 58.69 42.24 31.91 150.67 86.28 137.49 255.58 178.63 217.12 72.37 83.11 57.98 35.15 295.48 147.02 179.86 47 ER12a ExonRegion 0 36.87 28.02 162.86 54.96 39.47 30.86 31.51 64.38 37.04 31.45 185.63 67.45 172.85 240.50 212.94 208.05 98.81 108.21 100.17 39.56 300.72 193.36 195.09 48 E12_Da NovelBoundary 0 45.49 0.00 1.21 1.96 6.96 14.14 9.67 14.99 4.89 1.37 17.16 0.00 13.64 23.96 23.61 32.64 16.55 5.43 9.60 3.00 11.12 2.57 12.21 49 E12a_E13a KnownJunction 0 72.61 41.77 177.82 75.28 40.07 41.00 27.78 76.27 44.10 34.95 195.68 61.07 184.40 218.67 245.01 255.92 115.10 107.20 138.26 36.24 318.59 218.24 167.31 50 E13_Aa NovelBoundary 0 15.78 0.00 9.28 2.06 20.71 2.44 6.27 10.43 3.04 0.00 7.58 6.30 0.00 0.00 0.00 20.17 8.60 6.72 17.69 2.88 6.12 8.27 3.33 51 ER13a ExonRegion 0 35.86 21.95 102.46 34.48 34.16 33.46 31.25 44.77 28.39 27.31 155.51 58.36 148.54 202.86 219.78 160.94 86.86 82.57 80.46 27.02 305.14 128.61 111.95 52 E13_Ab KnownBoundary 0 73.12 12.70 125.34 21.04 43.72 26.80 30.65 41.20 26.22 25.30 197.73 50.87 125.80 201.25 227.58 164.83 111.55 73.91 40.19 31.77 350.40 115.24 96.12 53 ER13b ExonRegion 0 81.20 25.03 121.97 29.77 50.38 32.90 26.25 47.53 24.54 31.23 188.90 54.12 100.11 203.33 185.96 135.29 112.10 83.75 73.51 27.82 314.62 105.26 127.97 54 E13a_E14a KnownJunction 0 169.36 67.95 137.04 46.35 74.02 73.48 45.00 57.75 25.81 32.53 211.16 69.77 73.70 232.86 257.62 269.33 121.74 105.46 153.51 37.58 349.29 173.54 223.14 55 ER14a ExonRegion 0 80.50 42.61 112.49 39.92 53.89 49.00 28.34 56.30 30.07 32.74 175.49 57.64 83.44 220.41 224.71 212.78 118.41 72.43 97.41 35.48 312.03 135.96 150.79 56 E14a_E15a KnownJunction 0 88.61 38.55 124.42 49.04 56.62 36.12 41.51 39.97 38.11 37.53 257.96 41.86 97.23 212.79 255.39 235.41 169.14 62.30 109.56 29.34 383.27 94.05 124.37 57 E14a_E16a KnownJunction 0 0.00 3.35 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 2.47 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER15a ExonRegion 0 63.03 36.33 83.81 26.55 49.12 35.66 35.09 30.15 32.84 23.46 140.17 31.70 65.14 192.61 177.05 119.36 86.27 46.54 54.62 27.76 239.66 75.91 103.87 59 E15a_E16a KnownJunction 0 69.86 27.03 75.99 27.60 49.15 34.64 39.13 36.06 28.24 19.99 96.76 24.46 49.35 178.41 99.39 98.35 59.28 42.28 7.15 28.76 193.42 83.83 62.57 60 ER15b ExonRegion 0 2.12 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER16a ExonRegion 1 59.43 26.68 78.95 25.03 35.56 26.85 27.55 27.08 23.77 19.41 83.84 15.27 17.20 140.70 134.04 90.24 67.45 38.87 36.38 21.42 190.43 82.79 94.05 62 E16_Da KnownBoundary 1 76.01 21.71 115.25 28.47 47.79 18.63 18.20 27.31 28.53 24.18 28.32 6.30 21.43 84.76 49.20 141.67 37.49 41.91 58.35 33.24 126.27 81.99 97.31 63 ER16b ExonRegion 0 82.03 31.75 93.78 30.68 40.47 28.21 25.98 40.84 24.47 21.78 78.83 16.56 33.72 111.79 165.08 82.07 47.96 35.02 33.70 24.28 154.13 84.33 81.79 64 ER16c ExonRegion 0 4.23 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 2.08 0.00 65 IG25 Intergenic 0 5.00 2.76 3.67 2.73 3.49 3.60 2.43 3.13 2.03 1.47 0.55 0.59 0.91 1.38 2.66 1.88 1.27 3.08 2.60 2.21 12.33 9.18 13.60 66 IG25_SR1 SilentIntergenicRegion 0 4.33 1.54 1.85 0.52 2.05 1.41 2.36 3.51 1.73 1.59 1.32 0.30 1.60 2.46 2.07 6.08 1.41 5.40 2.44 2.35 21.61 4.98 18.52 67 IG25_AR2 ActiveIntergenicRegion 0 2.58 1.99 1.56 2.19 6.84 6.70 4.94 3.76 3.50 1.85 1.18 2.17 4.28 1.48 3.10 1.94 1.98 4.51 7.37 4.80 16.51 9.09 18.20 68 IG25_SR2 SilentIntergenicRegion 0 4.62 2.75 2.79 2.35 3.09 3.72 3.20 3.10 1.31 1.59 0.53 0.95 1.32 1.20 2.73 2.06 2.32 3.52 4.39 3.39 18.30 9.78 18.71 69 IG25_AR3 ActiveIntergenicRegion 0 5.58 3.17 1.69 2.10 4.01 3.43 2.81 3.85 2.93 2.04 0.51 0.00 1.02 1.90 2.21 2.22 2.88 1.94 2.60 3.10 19.26 9.85 14.90 70 IG25_SR3 SilentIntergenicRegion 0 6.11 4.65 5.03 3.00 5.90 4.71 3.10 4.90 2.22 2.96 0.57 0.58 1.94 2.28 3.09 4.01 1.01 4.57 4.03 3.19 17.37 9.86 20.47 71 IG25_AR4 ActiveIntergenicRegion 0 5.47 3.77 7.68 4.15 3.27 4.77 2.60 5.31 3.21 3.50 0.59 0.00 0.81 1.45 2.84 3.50 2.31 5.60 3.95 5.06 21.88 11.59 26.42 72 IG25_SR4 SilentIntergenicRegion 0 5.27 1.63 6.75 5.83 2.42 4.57 0.22 2.15 2.71 2.74 1.52 0.00 0.95 1.67 2.80 2.20 2.66 4.20 6.63 1.95 16.99 5.14 18.22 73 IG25_AR5 ActiveIntergenicRegion 0 3.33 4.11 6.59 5.84 3.74 6.59 1.78 5.40 3.63 1.62 0.95 0.00 0.35 2.40 3.66 0.85 1.01 3.65 3.86 3.34 21.35 10.05 15.42 74 IG25_SR5 SilentIntergenicRegion 0 7.71 4.22 6.50 4.57 6.26 5.16 3.38 4.38 2.76 2.62 0.63 0.47 0.69 1.82 4.08 1.33 0.79 4.68 4.50 2.54 19.63 12.38 21.26 75 IG25_AR8 ActiveIntergenicRegion 0 8.40 4.56 4.92 5.07 5.49 4.26 3.06 6.17 3.59 1.26 0.60 1.98 1.51 2.70 3.98 3.29 1.93 2.33 1.55 2.92 9.47 11.41 15.65 76 IG25_SR6 SilentIntergenicRegion 0 6.71 1.84 4.15 3.27 3.58 3.29 3.03 2.88 2.68 1.16 0.76 0.74 1.16 1.45 2.99 1.49 1.68 3.17 1.50 1.88 11.14 10.34 12.27 77 IG25_AR9 ActiveIntergenicRegion 0 2.67 1.22 4.12 2.41 2.58 4.18 1.86 1.05 2.90 0.75 0.00 0.00 0.39 1.77 3.13 1.79 0.00 3.02 0.65 0.95 11.66 11.05 10.46 78 IG25_AR10 ActiveIntergenicRegion 0 3.93 0.00 1.23 1.36 2.68 3.67 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.13 13.85 20.84 21.40 79 IG25_SR7 SilentIntergenicRegion 0 5.29 4.09 1.16 1.43 5.40 3.35 2.49 2.32 2.62 0.54 0.00 0.62 0.00 1.35 0.85 1.49 0.86 0.08 0.61 1.19 3.38 13.64 6.88 80 IG25_AR11 ActiveIntergenicRegion 0 8.09 4.83 5.50 3.53 2.48 4.37 3.56 4.63 1.80 0.85 0.35 1.30 0.00 0.95 3.79 3.60 0.91 0.68 0.82 1.36 3.95 19.51 13.24 81 IG25_AR12 ActiveIntergenicRegion 0 7.97 3.65 4.31 3.64 3.03 5.72 2.43 2.54 1.65 0.65 1.00 0.95 0.55 1.19 5.03 1.54 1.87 1.69 3.01 2.28 7.38 14.86 10.81