Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CSPG5 Gene 0 2.00 22.76 27.65 15.37 10.72 51.20 12.79 18.56 21.41 8.80 0.18 0.09 0.14 0.48 0.77 0.31 0.46 23.72 6.10 19.63 0.18 0.54 0.69 2 383738 Transcript 0 0.04 13.64 15.25 7.56 1.59 10.30 6.68 14.45 15.76 6.45 0.00 1.12 0.00 0.06 0.00 0.94 0.00 15.57 2.14 8.20 0.00 0.66 0.53 3 264723 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 465441 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 456150 Transcript 0 0.00 0.19 0.04 0.00 0.00 0.12 0.00 0.72 0.98 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 3.32 0.00 0.00 0.01 6 IG13 Intergenic 0 2.26 13.76 17.02 15.47 12.39 6.17 8.41 10.20 6.37 7.51 1.11 1.20 0.59 0.71 1.86 1.59 2.55 20.49 18.22 23.79 2.01 1.28 3.43 7 IG13_SR1 SilentIntergenicRegion 0 2.26 13.77 17.03 15.49 12.40 6.18 8.42 10.20 6.38 7.51 1.11 1.20 0.59 0.71 1.86 1.59 2.55 20.51 18.23 23.81 2.01 1.28 3.43 8 ER1a ExonRegion 0 0.39 2.85 4.20 2.11 4.69 1.52 1.75 1.43 3.08 1.90 0.00 0.00 0.71 0.12 0.38 0.00 0.96 4.82 3.53 4.40 0.20 0.00 0.54 9 E1_Ab KnownBoundary 0 0.00 2.63 8.37 3.63 0.00 0.00 1.99 0.00 3.53 8.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.55 0.00 3.26 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.00 2.61 4.46 3.85 1.56 1.24 2.07 1.23 1.30 1.99 0.00 0.00 0.00 0.19 0.00 0.00 0.41 3.08 3.71 7.21 0.00 0.30 0.00 11 E1_Da KnownBoundary 0 0.00 0.00 4.67 1.73 0.00 2.78 0.00 3.45 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.40 0.00 0.00 0.00 12 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1c ExonRegion 0 0.17 1.01 2.61 0.86 0.32 1.43 0.78 0.55 1.01 0.39 0.00 0.00 0.00 0.21 0.20 0.00 0.00 3.34 0.75 2.96 0.00 0.16 0.34 14 E1b_E2b KnownJunction 0 0.00 3.09 6.95 0.00 0.00 5.28 0.00 4.60 1.27 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.73 4.24 2.62 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.00 0.19 0.04 0.00 0.00 0.12 0.00 0.72 0.98 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 3.32 0.00 0.00 0.01 16 E2_Ab KnownBoundary 0 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 12.08 0.00 0.00 0.00 17 ER2b ExonRegion 0 0.00 5.48 20.52 5.60 1.13 20.54 2.07 12.59 14.64 7.62 0.00 0.00 0.00 0.00 0.71 0.00 0.00 25.52 2.15 21.23 0.90 0.00 0.01 18 E2_Da KnownBoundary 0 0.00 9.21 22.97 17.55 0.00 5.05 2.16 20.58 27.81 11.12 0.00 0.00 0.00 0.00 4.82 0.00 0.00 52.44 3.86 26.91 0.00 0.00 0.00 19 ER2c ExonRegion 0 3.39 35.33 54.47 24.52 6.62 81.28 15.04 36.94 50.14 20.06 0.78 0.26 0.00 0.87 2.28 0.71 0.59 60.91 13.13 40.21 0.27 0.62 1.58 20 E2b_E3a KnownJunction 0 3.04 41.70 68.48 40.99 3.48 122.32 20.49 42.18 56.57 20.44 5.37 0.00 0.00 0.00 4.45 0.00 0.00 70.35 16.38 57.08 0.00 0.00 0.00 21 E3_Aa NovelBoundary 0 0.00 0.00 6.86 3.30 0.00 0.00 4.50 1.97 1.79 1.67 2.68 0.00 0.00 0.00 0.00 0.00 0.00 12.35 0.00 23.27 0.00 0.00 0.00 22 ER3a ExonRegion 0 3.89 36.32 77.74 42.57 7.62 159.99 26.37 57.90 57.40 27.50 0.63 0.00 0.00 0.94 1.89 0.80 1.82 80.25 18.67 59.07 0.00 1.84 1.58 23 E3_Da NovelBoundary 0 0.00 0.00 13.48 0.00 0.00 0.00 0.00 0.00 1.50 6.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 6.20 0.00 0.00 3.59 24 E3a_E4a KnownJunction 0 6.08 46.90 111.85 72.25 23.26 215.96 34.89 80.71 72.97 36.59 0.00 0.00 0.00 2.18 0.00 0.00 0.00 118.64 45.65 71.59 0.00 2.69 0.00 25 ER4a ExonRegion 0 6.74 29.06 104.03 66.08 23.98 113.86 35.03 68.84 86.08 32.70 0.00 0.00 0.00 0.41 2.67 0.00 2.87 103.96 25.52 61.42 1.42 1.04 0.85 26 E4_Da KnownBoundary 0 0.00 29.53 44.44 28.97 7.05 36.80 33.56 50.11 42.07 14.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.39 9.13 35.92 0.00 0.00 4.35 27 E4a_E5a KnownJunction 0 3.63 27.17 47.84 45.95 8.15 112.21 8.35 31.22 51.94 8.73 0.00 0.00 0.00 0.00 0.00 0.00 4.49 34.20 0.00 35.60 0.00 0.00 0.00 28 ER4b ExonRegion 0 0.08 18.00 20.21 13.06 3.17 15.71 11.15 18.18 22.66 7.52 0.00 2.24 0.00 0.12 0.00 1.87 0.00 24.68 4.29 16.39 0.00 1.31 1.05 29 E4_Db NovelBoundary 0 0.00 8.35 12.71 6.09 4.33 2.16 6.14 7.93 2.95 4.67 0.00 0.00 0.00 2.47 0.00 0.00 0.00 19.23 0.00 27.61 0.00 3.06 0.00 30 E4b_E5a KnownJunction 0 0.00 9.27 10.29 2.06 0.00 4.88 2.21 10.72 8.85 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.47 0.00 0.00 0.00 0.00 0.00 31 I4 Intron 0 2.39 14.00 16.11 12.07 5.08 13.83 6.85 8.44 8.83 5.31 0.20 0.18 0.21 0.32 0.35 0.28 0.31 10.65 4.48 21.33 0.40 0.83 0.31 32 I4_SR1 SilentIntronRegion 0 1.60 12.26 11.67 9.57 4.08 9.90 6.62 6.58 7.86 4.74 0.16 0.21 0.30 0.20 0.20 0.20 0.32 9.23 3.85 20.08 0.21 0.92 0.28 33 I4_AR1 ActiveIntronRegion 0 4.17 17.91 26.09 17.70 7.33 22.65 7.38 12.61 11.00 6.58 0.30 0.11 0.00 0.61 0.68 0.46 0.30 13.84 5.89 24.18 0.81 0.64 0.36 34 E5_Aa NovelBoundary 0 3.33 13.16 26.17 3.06 15.79 11.30 4.02 2.09 11.31 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.43 4.52 17.19 0.00 0.00 0.00 35 ER5a ExonRegion 0 7.96 102.29 72.20 51.71 64.68 202.41 59.76 51.12 46.33 16.57 0.00 0.00 0.38 1.37 0.40 0.87 0.54 21.95 9.31 37.51 0.22 1.83 0.85