Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CYB561D2 Gene 0 25.95 10.24 17.76 18.56 11.11 10.95 8.98 19.87 11.12 19.06 38.80 9.69 10.28 56.64 85.64 46.00 35.03 27.23 20.34 27.70 29.33 28.71 25.75 2 425346 Transcript 0 11.43 0.07 7.54 1.68 0.07 2.56 2.13 1.56 0.78 2.46 5.76 6.23 3.57 5.42 10.26 15.94 2.02 2.13 6.82 0.00 5.47 1.54 7.99 3 424512 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 232508 Transcript 0 3.33 5.66 3.05 1.60 7.89 2.90 0.00 1.56 0.00 0.00 4.58 0.00 0.00 0.00 4.45 4.19 3.83 5.89 12.33 0.00 8.96 0.00 0.00 5 418577 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 419046 Transcript 0 0.00 2.96 3.19 9.59 4.33 10.68 4.33 2.55 3.59 1.67 5.26 11.70 13.31 22.54 21.01 19.74 8.70 3.07 0.00 5.94 5.81 0.00 0.00 7 490926 Transcript 0 0.94 0.76 1.89 0.60 0.20 0.55 0.69 2.77 3.11 1.91 0.86 1.51 0.01 1.78 2.66 0.66 0.49 2.81 0.47 1.90 3.61 1.70 3.16 8 ER1a ExonRegion 0 0.71 0.15 0.00 0.00 0.14 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.02 0.12 0.00 0.00 0.32 0.44 0.02 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 3.09 3.12 0.00 10 E1_Ac KnownBoundary 0 0.00 3.35 0.00 0.00 4.33 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 6.25 0.00 11 E1_Ad KnownBoundary 0 11.63 8.81 3.84 5.69 3.57 4.83 18.02 1.77 4.14 9.29 4.90 0.00 0.00 15.77 27.32 21.53 20.94 11.65 17.04 5.88 20.14 16.17 18.69 12 ER1b ExonRegion 0 0.00 2.50 0.00 0.00 2.68 0.00 4.18 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 2.29 3.30 1.85 2.94 0.00 4.75 7.37 2.94 13 ER1c ExonRegion 0 0.00 5.97 0.65 1.27 2.68 1.71 7.77 0.00 0.99 1.53 1.93 0.00 0.00 3.36 10.83 5.75 9.68 3.57 6.16 1.56 12.34 13.06 5.68 14 ER1d ExonRegion 0 21.62 3.87 14.25 8.17 7.81 4.63 6.37 7.16 3.88 8.70 19.45 1.44 1.27 22.28 26.92 23.13 19.98 7.59 18.14 6.80 11.93 11.64 29.15 15 E1_Da KnownBoundary 0 3.19 0.00 4.23 1.90 4.07 0.00 2.12 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 4.11 6.59 0.00 0.00 0.00 2.63 0.00 16 E1a_E1f KnownJunction 0 3.33 5.66 3.05 1.60 7.89 2.90 0.00 1.56 0.00 0.00 4.58 0.00 0.00 0.00 4.45 4.19 3.83 5.89 12.33 0.00 8.96 0.00 0.00 17 E1a_E1g KnownJunction 0 22.15 0.00 15.08 3.36 0.00 5.11 4.15 3.12 1.56 4.92 11.53 12.45 7.14 10.30 20.52 31.87 4.02 4.15 13.65 0.00 10.63 2.63 15.96 18 E1_Db KnownBoundary 0 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 3.15 0.00 0.00 19 E1b_E1f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER1e ExonRegion 0 2.12 0.00 6.74 0.68 2.68 0.00 0.00 1.73 0.00 2.29 3.87 0.00 4.69 0.00 0.00 0.00 3.30 1.85 0.00 2.66 2.20 2.08 0.00 21 ER1f ExonRegion 0 9.27 0.99 6.52 6.08 4.11 1.90 2.23 9.44 4.59 7.46 9.45 2.61 2.15 15.11 12.98 14.89 9.21 11.44 3.14 7.66 3.86 4.10 4.10 22 E1_Ae KnownBoundary 0 20.30 0.00 10.53 14.55 8.57 17.04 4.28 10.60 13.08 12.97 12.27 0.00 6.82 11.83 9.64 12.39 29.08 27.15 0.00 18.54 5.50 0.00 7.60 23 ER1g ExonRegion 0 22.02 8.72 10.09 15.54 9.04 10.16 7.48 21.56 9.61 12.95 17.81 3.74 4.50 28.20 28.54 25.10 32.08 17.26 11.74 18.55 21.48 10.23 10.72 24 E1_Af KnownBoundary 0 79.13 12.23 14.84 11.99 4.16 17.55 7.64 18.85 10.36 21.22 25.27 0.00 6.82 31.14 22.99 48.02 58.72 23.46 8.28 20.33 23.23 5.88 11.87 25 ER1h ExonRegion 0 38.07 8.50 22.86 23.00 11.92 8.92 8.20 24.02 13.57 24.83 31.60 1.05 10.87 40.38 45.37 32.42 56.87 38.07 8.83 25.18 48.82 8.33 15.53 26 E1_Ag KnownBoundary 0 42.67 9.27 32.08 34.43 25.38 2.84 5.56 22.02 17.10 28.66 30.96 6.30 19.64 31.43 48.21 27.43 46.10 42.03 22.68 36.37 45.72 14.33 18.35 27 ER1i ExonRegion 0 30.98 6.02 41.78 31.14 12.35 9.91 8.56 32.54 18.36 31.68 63.82 13.85 24.20 78.85 121.37 96.35 67.44 46.89 50.67 40.58 59.22 43.41 71.47 28 E1_Dc NovelBoundary 0 6.74 8.81 13.48 6.89 4.33 2.38 6.76 11.99 1.68 4.19 2.68 6.30 0.00 6.65 4.45 3.25 8.98 8.62 8.19 9.14 0.00 2.57 0.00 29 E1c_E2a KnownJunction 1 34.82 15.19 37.85 23.44 11.12 24.59 26.37 15.61 16.61 25.04 31.06 25.66 27.76 62.04 145.50 98.95 21.88 26.03 18.73 29.47 40.71 34.05 56.60 30 E1c_E3a KnownJunction 0 0.00 2.96 3.19 9.59 4.33 10.68 4.33 2.55 3.59 1.67 5.26 11.70 13.31 22.54 21.01 19.74 8.70 3.07 0.00 5.94 5.81 0.00 0.00 31 E1c_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 3.41 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.57 0.00 0.00 3.15 0.00 4.35 32 E2_Aa NovelBoundary 0 10.30 9.80 10.20 6.06 4.33 2.90 8.44 4.85 3.30 4.22 2.26 0.00 13.64 2.18 4.45 8.72 0.00 17.04 0.00 18.28 5.87 5.82 4.27 33 ER2a ExonRegion 0 39.32 10.81 30.47 24.17 13.17 21.96 19.23 21.97 12.38 22.91 52.75 19.37 21.60 81.21 139.57 76.57 37.53 36.66 30.60 42.16 39.90 25.72 36.01 34 E2_Da NovelBoundary 0 28.67 6.18 6.03 3.96 11.97 0.00 3.89 1.89 1.65 7.01 7.48 12.15 0.00 11.07 13.72 0.00 8.70 4.52 3.76 2.68 0.00 2.51 8.62 35 E2a_E3a KnownJunction 0 76.46 9.08 18.63 20.94 12.90 27.03 12.94 28.46 8.80 13.81 69.18 12.15 6.82 83.05 146.24 55.80 59.47 40.00 29.18 50.88 41.82 27.37 32.35 36 I2 Intron 0 26.63 22.08 14.50 17.95 17.63 4.81 8.63 11.58 6.06 8.06 3.33 11.94 4.46 11.67 11.50 11.35 4.45 8.74 8.35 8.92 4.29 6.09 9.68 37 I2_AR1 ActiveIntronRegion 0 26.70 22.14 14.54 18.00 17.69 4.82 8.65 11.61 6.08 8.09 3.34 11.97 4.48 11.70 11.54 11.39 4.46 8.76 8.37 8.95 4.30 6.10 9.71 38 E3_Aa NovelBoundary 0 12.59 25.19 18.57 11.09 23.43 5.79 7.64 12.53 4.98 9.27 5.11 11.70 21.75 16.42 25.47 8.20 0.00 9.78 4.24 12.14 8.96 13.29 0.00 39 ER3a ExonRegion 0 47.86 31.61 34.83 26.79 22.79 26.74 22.08 33.65 17.90 23.46 62.60 16.78 8.00 96.06 155.13 72.55 60.39 48.78 35.35 47.38 47.79 37.12 38.60 40 E3_Da KnownBoundary 0 86.61 18.22 52.22 21.71 38.03 16.07 18.90 26.78 20.75 31.56 68.02 11.40 0.00 118.72 192.10 50.59 63.96 60.40 21.84 49.73 50.41 40.60 16.73 41 ER3b ExonRegion 0 45.34 17.88 26.22 34.74 19.50 19.69 15.00 33.32 19.48 35.47 77.08 19.15 20.72 114.89 178.14 84.89 60.08 48.42 35.12 53.11 51.45 63.14 43.16 42 E3_Db KnownBoundary 0 43.79 41.44 7.04 11.29 43.89 20.16 12.19 12.24 4.57 13.51 22.53 7.65 42.85 74.22 79.24 33.84 17.20 14.63 8.56 35.73 5.56 17.57 16.13 43 ER3c ExonRegion 0 21.17 19.22 3.43 7.63 24.22 13.20 6.62 8.64 0.00 9.81 20.20 6.28 19.23 61.23 66.73 22.74 12.05 9.33 5.10 20.43 3.09 11.77 11.31 44 ER3d ExonRegion 0 8.59 9.45 0.00 3.85 11.33 4.42 3.04 4.68 0.00 4.25 11.14 0.00 1.38 19.97 23.89 10.49 7.57 3.04 2.62 7.26 0.00 5.39 5.87 45 I3 Intron 0 2.38 2.45 5.14 4.74 4.30 3.39 6.28 5.80 3.26 4.12 0.78 2.72 3.17 1.89 3.10 2.87 2.39 15.14 5.89 8.56 3.55 4.35 3.54 46 I3_SR1 SilentIntronRegion 0 2.47 2.06 6.66 6.06 4.47 2.54 6.88 7.17 3.90 4.87 0.85 2.00 3.95 1.91 4.09 3.49 2.82 17.86 6.62 9.04 4.24 5.14 4.39 47 E4_Aa NovelBoundary 0 7.56 2.63 6.33 1.96 0.00 0.00 0.00 6.41 6.66 2.26 2.05 0.00 0.00 2.30 10.75 7.78 8.98 17.29 4.80 5.69 7.72 2.57 3.33 48 ER4a ExonRegion 0 1.89 1.51 3.78 1.21 0.40 1.09 1.38 3.78 2.80 3.81 1.72 3.03 0.01 1.08 5.31 1.33 0.98 3.05 0.95 3.79 4.07 3.41 1.97