Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GNAI2 Gene 0 272.23 56.14 224.83 94.24 124.87 93.01 74.28 204.69 130.58 119.99 547.19 209.31 214.38 557.97 486.54 561.94 449.33 120.10 174.86 94.31 537.59 342.19 290.50 2 422163 Transcript 0 0.43 5.83 3.06 0.70 0.34 4.97 0.68 1.49 0.53 2.44 6.07 0.34 0.38 9.05 5.93 2.18 2.95 15.97 6.56 11.92 12.03 7.10 9.50 3 446079 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 491100 Transcript 0 1.26 3.43 3.32 5.26 0.73 2.40 1.33 1.84 2.55 1.81 1.15 0.65 0.23 0.82 1.45 1.90 2.69 12.77 2.52 10.11 3.24 1.40 3.62 5 480090 Transcript 0 1.14 1.64 2.74 1.66 0.72 1.48 1.06 1.38 1.71 0.94 3.96 0.00 0.00 1.80 0.64 0.80 0.00 4.59 1.66 7.91 1.18 0.00 1.58 6 313601 Transcript 1 43.90 28.65 151.94 44.97 27.13 47.11 19.46 109.53 88.90 87.86 441.50 69.81 72.56 298.49 344.67 604.03 343.04 103.19 134.68 78.99 444.46 218.03 303.81 7 383725 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 441156 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 440628 Transcript 0 1.58 1.19 3.82 2.47 0.67 1.06 1.11 3.36 2.31 1.71 2.87 0.00 1.29 3.25 3.22 3.74 3.32 4.39 1.60 4.80 4.97 2.96 7.14 10 451956 Transcript 0 2.37 1.42 3.58 3.13 1.50 3.34 1.48 3.62 5.17 1.44 1.65 3.46 2.16 0.55 3.32 6.25 3.66 4.80 3.12 3.88 3.43 3.45 3.31 11 490122 Transcript 0 11.75 4.16 24.07 9.22 3.99 5.91 6.25 14.49 9.94 6.84 7.67 3.66 3.64 4.81 10.94 16.35 13.55 16.85 8.56 12.19 13.91 6.79 9.87 12 266027 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 468422 Transcript 0 57.40 4.60 32.29 18.27 15.59 13.05 11.45 18.64 7.52 12.32 16.07 5.32 4.69 19.30 16.81 29.14 12.60 11.98 5.05 12.68 18.01 18.94 13.89 14 492383 Transcript 0 68.81 4.81 42.81 14.68 23.08 23.98 13.83 45.85 27.31 19.83 72.29 34.77 35.51 122.94 129.21 156.14 91.15 28.09 29.21 14.64 186.51 105.63 103.04 15 ER1a ExonRegion 0 0.87 2.33 1.04 1.39 0.69 0.63 1.37 0.88 1.05 0.39 0.66 0.68 0.77 0.61 0.98 0.42 1.14 5.58 4.37 6.33 1.51 0.00 2.35 16 E1_Ab KnownBoundary 0 146.54 80.25 156.65 171.34 75.64 30.66 40.94 182.86 149.85 167.00 40.75 13.80 0.00 16.60 27.69 56.99 58.91 230.81 37.27 79.83 35.95 21.55 55.23 17 ER1b ExonRegion 0 3.67 3.47 6.26 6.36 3.52 5.14 5.19 4.82 7.21 3.72 10.52 4.15 3.65 7.95 5.75 7.85 12.88 17.68 4.41 20.25 17.56 10.01 22.57 18 E1a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1a_E7d KnownJunction 0 0.00 9.34 5.09 0.00 0.00 9.31 0.00 2.09 0.00 4.49 11.48 0.00 0.00 17.48 10.88 3.93 4.77 26.36 8.75 17.51 22.55 14.21 16.65 20 ER2a ExonRegion 0 2.53 3.51 6.63 10.52 1.45 2.19 2.67 3.68 5.11 3.62 2.31 1.29 0.45 1.63 2.90 3.80 5.38 25.54 5.04 20.22 6.49 2.79 7.23 21 E2_Ab KnownBoundary 0 2.74 2.50 12.80 15.32 4.33 0.00 0.00 6.82 3.39 2.90 2.05 0.00 0.00 0.00 9.89 3.85 3.93 41.54 3.76 21.03 6.30 8.14 12.12 22 ER2b ExonRegion 0 0.63 0.72 10.72 11.93 3.91 2.68 3.14 4.99 6.07 4.17 4.27 0.99 0.00 1.79 3.33 3.54 3.77 30.50 8.56 20.25 3.19 4.62 8.58 23 E2_Da NovelBoundary 0 0.00 0.00 3.67 16.61 3.40 2.44 0.00 8.30 3.36 4.59 0.00 0.00 0.00 2.41 10.75 8.72 0.00 34.20 0.00 17.26 2.47 4.78 19.63 24 E2a_E3a KnownJunction 0 0.00 0.00 1.48 0.00 0.00 0.00 1.94 0.00 2.60 1.07 2.42 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 9.40 0.00 0.00 0.00 25 E2a_E7d KnownJunction 0 0.00 3.35 0.00 0.00 0.00 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER3a ExonRegion 0 2.27 3.28 4.01 3.31 1.44 2.95 0.18 2.77 0.81 0.81 5.49 0.00 0.00 3.59 1.28 1.60 0.00 6.61 3.32 6.43 2.37 0.00 3.15 27 I3 Intron 0 5.37 5.76 4.36 6.97 2.39 2.73 3.36 9.22 5.21 4.33 2.02 2.24 1.28 3.76 2.14 3.99 5.91 14.39 6.65 21.26 5.26 3.42 3.94 28 I3_SR1 SilentIntronRegion 0 5.40 5.80 4.38 7.01 2.40 2.75 3.38 9.27 5.25 4.36 2.03 2.25 1.28 3.78 2.15 4.01 5.94 14.48 6.69 21.38 5.29 3.44 3.96 29 ER4a ExonRegion 0 0.85 1.49 2.70 0.00 0.19 0.99 0.87 0.30 1.53 0.83 2.39 0.72 0.17 2.34 2.53 3.74 3.50 4.64 2.66 4.30 1.99 0.91 2.57 30 E4_Ab KnownBoundary 0 3.11 6.12 4.55 0.00 4.07 10.85 1.90 4.56 7.09 2.36 22.22 0.00 0.00 17.31 9.27 51.18 30.20 16.29 39.91 10.87 14.46 2.39 12.63 31 ER4b ExonRegion 1 112.17 25.67 110.95 34.85 46.66 66.61 40.72 107.55 82.15 90.33 668.40 43.35 55.11 378.73 321.49 544.41 639.86 114.36 172.60 80.80 818.35 174.36 271.53 32 E4a_E7d KnownJunction 1 126.62 84.46 453.12 133.55 78.52 136.68 57.50 321.36 261.46 262.76 1318.23 208.72 212.81 886.64 1031.46 1799.44 1015.71 304.93 391.82 230.55 1326.98 638.60 900.07 33 E4a_E7e KnownJunction 0 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 2.57 0.00 0.00 0.00 0.00 0.00 34 ER5a ExonRegion 0 3.16 2.37 7.64 3.32 1.34 2.11 2.22 4.82 4.62 3.43 3.62 0.00 2.58 4.02 6.45 7.47 6.63 6.45 3.20 9.61 7.41 5.93 10.01 35 E5a_E7d KnownJunction 0 0.00 0.00 0.00 1.63 0.00 0.00 0.00 1.89 0.00 0.00 2.11 0.00 0.00 2.47 0.00 0.00 0.00 2.32 0.00 0.00 2.53 0.00 4.27 36 ER6a ExonRegion 0 4.74 2.85 7.16 6.25 3.00 6.68 2.97 4.78 10.35 2.87 3.29 6.92 4.33 1.10 6.65 12.49 7.33 9.59 6.25 7.75 6.87 6.90 6.62 37 E6a_E7d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER7a ExonRegion 0 9.42 3.91 14.39 7.34 5.14 5.35 8.33 14.33 11.38 5.98 4.02 5.02 0.93 3.10 9.66 13.51 15.38 21.68 7.68 13.42 12.62 7.75 4.53 39 E7_Ab KnownBoundary 0 21.49 0.00 19.90 7.19 0.00 2.16 6.45 22.71 17.27 3.92 2.68 7.65 0.00 0.00 15.20 20.34 13.09 34.53 9.41 10.80 16.49 3.12 4.35 40 ER7b ExonRegion 0 7.80 3.50 20.65 8.53 0.45 8.01 4.41 22.89 14.20 3.27 4.90 2.16 0.00 1.11 9.72 19.48 10.09 25.05 5.72 6.15 10.81 9.14 3.64 41 E7_Ac KnownBoundary 0 6.59 2.76 22.97 12.65 3.23 27.26 2.25 22.76 14.09 1.48 5.26 0.00 0.00 0.00 15.95 37.34 4.77 17.37 3.67 8.50 11.68 8.39 4.35 42 ER7c ExonRegion 0 5.98 2.03 24.63 12.88 3.57 11.32 2.51 19.91 15.20 3.08 2.58 2.64 1.09 2.07 13.92 21.62 11.53 25.07 11.54 9.03 10.89 4.77 5.92 43 E7_Da KnownBoundary 0 20.23 2.57 31.46 14.52 0.00 8.01 1.94 24.19 4.66 6.47 0.00 0.00 6.66 2.12 18.05 19.40 28.24 20.44 16.94 15.02 7.91 0.00 4.35 44 E7a_E7d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER7d ExonRegion 0 12.75 4.27 31.59 11.27 1.62 7.91 3.91 17.27 10.70 8.17 7.07 2.03 1.47 4.40 9.10 19.08 11.33 19.32 9.40 13.08 15.46 5.20 14.49 46 E7_Ad KnownBoundary 0 9.78 0.00 30.07 6.99 3.65 17.49 7.77 10.72 11.46 7.09 5.21 7.50 0.00 2.47 8.90 0.00 0.00 11.52 4.71 9.01 17.42 0.00 8.71 47 ER7e ExonRegion 1 107.64 59.02 508.27 150.31 104.93 146.88 87.73 362.28 273.99 287.60 1449.72 239.87 263.54 1037.39 1004.04 1487.48 1036.17 372.76 300.94 235.61 1361.94 575.45 757.79 48 E7_Db KnownBoundary 0 3.11 6.71 40.09 7.52 20.71 12.66 11.97 11.42 9.00 6.02 4.84 0.00 0.00 4.83 8.90 7.60 17.86 14.30 8.47 11.82 0.00 5.33 11.35 49 E7b_E7e KnownJunction 1 164.55 41.70 415.98 159.55 219.02 173.76 147.68 341.45 249.33 254.84 1676.79 250.28 281.15 1195.66 1346.44 1346.66 1279.29 342.16 331.02 263.08 1580.64 623.30 738.48 50 ER7f ExonRegion 0 13.07 4.30 26.22 9.04 5.20 4.46 6.51 11.88 7.75 6.38 11.92 3.92 8.52 6.92 14.05 16.45 13.95 9.54 8.61 10.08 13.65 7.42 10.57 51 E7_Ae KnownBoundary 0 5.93 9.34 24.30 6.13 7.81 2.27 5.96 11.58 8.07 7.01 5.16 6.30 12.82 0.00 0.00 8.29 4.39 10.16 13.93 5.62 16.74 2.33 7.77 52 ER7g ExonRegion 0 223.45 63.04 643.15 249.95 174.23 237.08 160.11 518.46 364.72 368.49 1468.18 269.90 460.42 1460.26 1545.96 1425.08 1306.03 326.08 412.74 296.42 1606.38 933.12 658.95 53 E7c_E8a KnownJunction 0 451.27 82.02 872.53 376.21 192.28 190.91 166.10 626.26 417.91 463.80 1756.81 382.62 493.80 2553.14 2605.36 2479.61 1546.42 571.43 830.61 378.13 1985.65 1651.16 1132.17 54 ER8a ExonRegion 1 511.37 106.10 758.39 306.11 214.65 184.85 156.07 629.14 452.75 441.10 2064.19 336.67 492.74 2243.11 1988.95 1845.15 1602.98 478.75 555.81 374.06 2005.75 1085.20 899.26 55 E8_Ab NovelBoundary 1 761.54 224.37 854.73 347.91 346.43 259.57 208.76 758.76 511.42 486.07 2504.32 392.38 611.97 2281.49 2098.03 2430.22 1724.45 540.22 649.05 348.03 2134.41 1298.70 1127.56 56 E8a_E9a KnownJunction 0 1148.87 191.28 978.35 468.37 587.44 414.93 363.06 796.34 619.93 562.11 2206.87 592.39 582.92 2574.68 2161.08 2532.16 1783.92 835.66 837.20 378.52 2316.47 1578.23 1151.89 57 ER8b ExonRegion 0 759.97 178.01 872.87 396.33 417.33 316.15 253.32 742.43 541.35 515.72 2406.78 450.41 586.88 2328.18 2048.57 2473.70 1730.55 738.73 727.43 338.58 2232.36 1429.16 1131.49 58 ER9a ExonRegion 0 1141.63 200.06 914.34 370.22 521.01 437.52 329.16 714.23 559.88 498.34 2726.96 558.08 776.96 2954.82 2661.74 2827.56 2130.41 724.48 872.72 482.40 2403.82 1495.88 1320.50 59 E9_Ab KnownBoundary 0 1749.35 208.19 1046.39 417.36 482.60 475.07 431.47 823.29 634.31 520.77 2706.21 579.04 882.41 2847.68 3015.27 2937.18 2286.67 688.79 831.55 492.29 2276.80 1517.92 1433.59 60 ER9b ExonRegion 0 1174.09 261.89 961.19 430.60 524.08 441.90 435.08 803.96 657.35 525.19 2766.13 669.43 859.16 2790.72 2398.87 2812.35 2193.49 714.63 880.45 475.21 2478.28 1544.17 1380.78 61 E9_Da KnownBoundary 0 41.19 5.92 33.14 15.05 42.78 15.39 16.08 29.45 10.73 18.13 17.90 6.30 13.64 25.72 29.05 11.36 8.42 13.89 8.38 20.39 31.51 10.84 4.35 62 E9a_E10a KnownJunction 0 1241.78 358.55 1025.07 471.83 728.18 502.21 495.86 868.14 712.09 552.44 2778.49 929.85 1009.35 2828.37 2316.22 2829.60 2204.02 700.48 1056.78 489.54 2642.65 1597.40 1417.63 63 ER9c ExonRegion 0 57.40 4.60 32.29 18.27 15.59 13.05 11.45 18.64 7.52 12.32 16.07 5.32 4.69 19.30 16.81 29.14 12.60 11.98 5.05 12.68 18.01 18.94 13.89 64 E9_Db NovelBoundary 0 127.87 6.25 26.67 34.06 31.24 14.20 22.70 17.37 20.11 21.46 22.32 12.60 7.30 37.20 41.78 31.87 29.55 26.99 9.22 17.83 26.93 23.09 11.61 65 E10_Aa NovelBoundary 0 73.05 16.18 57.63 55.10 19.95 31.91 26.76 36.47 17.13 12.11 11.53 6.30 33.44 19.42 34.74 56.40 29.73 37.93 9.60 23.91 12.60 16.96 17.33 66 ER10a ExonRegion 0 1042.74 196.88 1162.65 523.65 601.82 500.74 391.85 992.93 720.97 607.57 2894.59 1058.45 1092.89 2679.75 2477.40 2672.31 2435.43 556.04 884.62 548.28 2695.48 1655.00 1301.23 67 E10a_E11a KnownJunction 0 1099.90 247.59 1291.20 630.42 572.33 432.99 352.77 1190.28 785.00 632.57 3291.68 1193.64 1268.91 3197.03 3523.47 3136.44 2618.23 711.38 808.96 567.58 2816.06 1745.09 1656.30 68 ER11a ExonRegion 0 862.37 230.75 1544.33 711.13 635.11 490.70 374.53 1446.08 995.09 789.74 4273.05 1726.81 1397.99 3543.62 3211.27 3889.55 3150.66 895.82 1315.08 657.40 3507.38 2237.47 1971.00 69 E11a_E12a KnownJunction 0 1135.46 246.01 1281.53 500.37 787.18 542.47 448.43 1169.13 793.60 580.41 3418.55 1899.17 1566.13 2891.41 2873.49 2994.43 2519.87 699.86 912.97 497.02 2894.58 1209.91 1311.35 70 ER12a ExonRegion 0 1778.90 235.96 1237.03 479.17 600.43 441.27 361.29 1036.02 723.42 608.47 2645.87 1587.08 1232.95 2762.09 2557.04 2667.46 2200.30 583.74 836.00 478.42 2654.91 1711.80 1297.18 71 E12_Da KnownBoundary 1 68.16 0.00 24.39 7.76 24.28 22.94 22.61 15.24 9.09 8.84 37.75 99.03 82.46 112.84 41.78 48.45 58.81 10.65 8.85 8.05 138.32 57.25 54.72 72 E12a_E13a KnownJunction 0 1209.92 179.38 930.54 299.66 189.73 223.73 142.20 673.74 462.78 401.51 877.17 745.44 487.79 1258.70 1438.41 1298.46 857.41 234.29 335.73 236.94 836.53 837.25 639.28 73 ER12b ExonRegion 0 68.81 4.81 42.81 14.68 23.08 23.98 13.83 45.85 27.31 19.83 72.29 34.77 35.51 122.94 129.21 156.14 91.15 28.09 29.21 14.64 186.51 105.63 103.04 74 E12_Db NovelBoundary 0 58.01 2.76 66.47 25.74 112.82 68.31 52.69 60.95 48.12 34.92 107.87 55.37 52.92 166.64 229.68 199.01 107.53 59.24 31.25 9.20 195.40 169.74 145.80 75 I12 Intron 0 141.25 6.71 30.58 14.94 26.48 26.52 16.46 49.02 20.55 19.08 82.90 38.84 42.93 157.35 142.68 135.74 104.69 23.54 25.86 15.66 176.09 100.97 94.63 76 I12_AR1 ActiveIntronRegion 0 142.66 6.78 30.88 15.09 26.74 26.78 16.63 49.50 20.76 19.27 83.74 39.20 43.37 158.87 144.10 137.08 105.73 23.77 26.11 15.81 177.82 101.95 95.55 77 E13_Aa NovelBoundary 0 98.54 14.54 30.75 18.28 8.06 2.16 10.07 47.36 27.43 39.03 33.32 25.36 26.78 97.42 116.32 84.68 69.85 20.19 23.15 15.40 72.16 77.03 51.99 78 ER13a ExonRegion 0 1330.87 243.96 762.37 278.80 461.66 415.18 322.52 702.63 408.15 430.74 1706.13 671.53 722.41 2029.02 1695.79 1876.54 1526.35 310.98 560.58 251.64 1930.98 1173.84 991.52 79 E13_Da KnownBoundary 0 2012.21 313.50 655.57 252.91 932.51 584.44 386.42 771.82 351.59 352.08 1586.61 583.39 567.50 1793.17 1551.27 1560.96 1480.41 287.73 505.99 224.41 1683.68 826.96 905.79 80 ER13b ExonRegion 0 2117.58 340.10 772.53 268.06 866.15 468.20 314.51 853.95 418.89 419.94 1685.77 746.91 920.98 1954.27 1476.09 1969.03 1370.67 365.03 521.99 172.89 1829.41 952.09 1133.16 81 E13_Db KnownBoundary 0 6367.72 634.16 978.53 365.16 1224.45 773.25 550.97 1097.95 503.41 494.64 2322.17 1295.97 1693.07 2700.94 2311.52 4012.54 1968.96 482.64 947.42 276.06 2327.34 1650.86 2313.25 82 ER13c ExonRegion 0 1271.01 341.53 725.68 285.19 551.20 356.45 270.27 910.51 434.91 435.82 2062.08 854.49 963.93 2227.10 1676.11 2426.78 1539.31 288.82 775.99 175.82 1728.83 1593.82 1338.63 83 E13_Dc KnownBoundary 1 132.62 33.35 33.56 25.11 143.89 43.16 54.63 46.17 20.40 27.91 118.61 180.21 171.58 400.38 221.03 160.21 118.37 17.37 44.80 23.01 111.76 88.42 99.53 84 E13_Dd KnownBoundary 0 89.50 42.16 63.16 34.99 228.61 96.82 103.78 78.29 43.75 27.67 355.25 142.85 179.05 400.38 207.43 273.26 356.61 6.01 93.93 41.35 361.21 245.55 162.02 85 ER13d ExonRegion 0 266.68 109.81 246.05 106.31 394.41 179.71 179.00 278.63 136.36 142.67 694.30 445.07 519.66 1148.58 699.20 657.43 653.58 61.35 243.36 84.26 722.38 489.21 366.49 86 ER13e ExonRegion 0 727.87 194.35 466.04 206.54 444.01 190.44 187.22 479.95 224.46 234.26 1004.83 569.57 655.32 1182.87 883.81 1157.71 810.41 114.99 347.33 126.24 920.91 834.68 636.75 87 ER13f ExonRegion 0 131.22 45.08 35.54 26.12 69.57 36.98 45.68 62.22 22.03 14.34 98.90 38.24 61.75 308.85 171.66 127.80 70.42 7.08 44.60 20.57 114.23 71.19 86.63 88 ER13g ExonRegion 0 47.97 14.46 7.90 9.54 19.03 18.75 23.83 29.58 9.88 6.12 30.28 4.33 27.62 108.46 58.99 63.41 25.31 0.62 22.30 6.38 42.85 42.60 50.25 89 ER13h ExonRegion 0 4.23 0.00 0.00 1.36 2.68 3.67 0.00 6.91 3.71 0.00 3.87 0.00 4.69 6.50 0.00 8.92 9.90 0.00 9.56 2.13 4.41 14.58 8.81