Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PRKAR2A Gene 0 18.96 30.14 35.70 22.74 23.08 23.14 39.69 26.81 19.88 20.59 51.82 42.04 36.80 51.91 24.39 36.04 40.49 38.49 34.57 37.74 44.04 31.36 32.68 2 265563 Transcript 0 11.49 11.32 14.93 6.91 10.05 8.15 13.55 9.46 5.31 6.36 12.34 6.41 5.50 11.21 8.96 8.70 6.68 9.60 11.54 7.71 8.50 9.05 9.39 3 419216 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 4.36 0.00 7.21 0.00 0.00 0.00 0.00 0.00 4 296446 Transcript 0 0.00 0.00 1.48 0.00 0.00 0.00 2.25 4.89 0.00 0.00 5.37 11.70 0.00 4.36 0.00 3.93 0.00 6.30 0.00 3.26 5.44 2.39 0.00 5 454963 Transcript 0 10.15 3.03 6.45 1.40 19.78 25.44 17.00 6.57 6.51 1.67 2.68 0.00 0.00 5.24 8.90 0.00 3.65 0.00 0.00 8.44 7.54 5.76 7.60 6 437821 Transcript 0 8.85 20.14 15.93 16.01 11.69 14.32 38.86 13.40 11.73 19.21 63.00 26.74 29.31 45.46 13.06 27.29 42.78 24.71 30.92 44.73 45.86 28.30 25.75 7 438535 Transcript 0 11.94 26.56 16.78 19.85 17.39 18.34 47.65 27.01 15.44 17.00 46.25 71.22 50.42 61.31 20.36 38.73 53.63 32.58 38.90 34.05 38.56 22.15 29.37 8 457914 Transcript 0 5.57 11.32 14.89 8.35 8.74 9.18 16.94 15.27 11.71 7.43 27.76 36.80 38.69 28.67 13.26 20.90 24.77 17.80 16.56 25.74 24.17 17.64 11.35 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ad KnownBoundary 0 0.00 2.96 1.80 1.50 0.00 0.00 2.03 1.85 1.62 1.18 8.53 0.00 0.00 0.00 0.00 3.67 0.00 1.95 3.67 0.00 2.59 2.69 7.26 11 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1d ExonRegion 0 3.91 10.54 13.18 10.09 5.88 11.30 18.15 7.25 10.81 14.47 55.01 9.91 12.35 54.48 17.86 29.46 41.44 31.76 17.98 30.10 67.75 18.53 24.41 14 E1a_E2a KnownJunction 0 42.08 69.86 30.07 24.64 31.66 13.23 58.47 37.21 28.27 56.25 158.41 62.12 68.66 123.43 39.56 50.33 105.19 60.90 49.88 88.53 121.76 67.72 80.16 15 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 4.36 0.00 7.21 0.00 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 25.93 63.44 36.90 32.37 26.61 29.24 61.31 32.74 51.12 51.67 135.57 61.21 32.96 114.86 34.09 46.98 96.18 63.34 48.84 88.36 101.55 77.67 60.28 17 E2_Da NovelBoundary 0 16.67 34.07 4.41 0.00 0.00 0.00 10.73 0.00 7.44 0.00 0.00 6.30 6.01 4.94 4.45 8.29 0.00 2.11 4.33 18.66 0.00 2.82 0.00 18 E2a_E3a KnownJunction 0 20.67 68.15 34.33 38.16 30.05 49.40 79.27 27.27 50.75 27.78 96.66 41.41 52.59 102.07 57.11 62.46 84.71 43.98 51.48 79.77 82.04 81.26 45.07 19 E3_Aa NovelBoundary 0 35.64 18.42 12.54 8.12 0.00 0.00 7.82 6.57 5.15 0.00 0.00 0.00 0.00 0.00 4.45 4.36 4.02 4.15 4.80 12.08 3.15 2.57 7.60 20 ER3a ExonRegion 0 25.24 64.12 50.31 51.30 43.27 46.64 110.71 40.60 48.85 56.52 138.15 80.79 75.39 131.37 61.25 68.30 100.90 87.02 58.72 93.70 111.47 65.30 59.07 21 E3a_E4b KnownJunction 0 38.08 68.94 74.21 63.16 34.55 51.62 162.52 57.13 55.96 73.15 193.31 102.03 146.58 161.34 43.64 79.98 139.22 95.59 65.88 120.29 112.25 77.52 85.28 22 E4_Aa NovelBoundary 0 13.78 0.00 10.38 2.06 0.00 0.00 2.21 7.19 3.56 2.55 2.26 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 2.53 0.00 0.00 23 E4_Ab NovelBoundary 0 11.11 8.55 1.42 5.09 0.00 0.00 2.21 6.20 4.63 1.02 0.00 0.00 0.00 0.00 0.00 4.19 4.30 0.00 0.00 0.00 0.00 3.06 3.50 24 ER4a ExonRegion 0 14.82 27.45 31.86 32.03 20.07 22.01 62.23 26.79 23.47 38.42 103.41 47.62 58.63 77.15 26.11 44.58 70.97 46.19 39.82 67.02 62.81 37.50 38.18 25 ER4b ExonRegion 0 25.55 41.98 68.84 65.81 37.94 49.71 114.29 63.83 52.10 76.72 219.38 72.83 123.45 165.14 59.58 106.15 159.27 85.06 85.89 157.14 145.68 72.85 83.27 26 ER4c ExonRegion 0 26.17 67.00 85.75 73.65 56.43 50.01 97.61 75.11 66.18 74.07 239.36 100.44 136.01 157.39 68.58 139.26 161.32 133.04 90.35 154.35 132.14 100.92 128.95 27 E4_Db NovelBoundary 0 40.45 16.44 10.76 5.29 7.56 0.00 11.13 6.65 7.75 4.35 0.00 19.51 8.12 0.00 12.11 8.54 4.68 1.82 8.75 6.14 0.00 2.94 3.33 28 E4b_E5a KnownJunction 0 21.34 78.08 101.47 91.50 78.52 73.42 124.36 77.47 87.90 75.11 188.57 237.98 247.22 153.75 81.09 170.38 140.81 182.52 96.47 152.38 120.71 157.62 160.40 29 E5_Aa NovelBoundary 0 7.41 3.35 19.13 3.66 4.16 2.84 19.83 9.36 4.72 7.63 2.68 6.30 0.00 2.47 4.45 3.67 4.21 12.81 8.28 11.06 2.90 2.94 6.91 30 ER5a ExonRegion 0 17.62 85.60 118.87 92.59 73.52 62.25 111.48 98.84 80.91 100.81 258.52 253.13 218.63 215.73 90.40 162.27 194.32 169.77 173.83 190.41 164.21 182.71 146.09 31 E5_Da NovelBoundary 0 7.41 26.11 20.22 13.35 35.23 0.00 11.75 16.31 9.49 1.53 5.05 0.00 18.99 0.00 0.00 0.00 0.00 11.48 3.67 13.04 0.00 0.00 12.29 32 E5a_E6a KnownJunction 0 25.78 103.67 88.26 76.35 71.73 64.68 135.76 108.48 67.77 97.16 268.80 193.71 179.86 197.78 95.56 178.41 223.94 66.16 123.67 167.85 185.46 108.57 90.31 33 ER6a ExonRegion 0 54.18 118.37 109.67 108.92 100.46 84.00 181.11 109.07 76.47 88.07 204.42 265.00 252.59 230.99 76.43 147.89 185.28 138.47 156.85 166.50 158.61 148.40 138.58 34 E6_Da NovelBoundary 0 10.37 6.45 8.99 13.15 0.00 7.38 3.89 4.72 5.18 0.00 0.00 0.00 12.99 2.47 4.45 3.76 0.00 9.49 13.55 0.00 2.78 0.00 8.37 35 E6a_E7b KnownJunction 0 53.49 101.96 61.03 76.48 62.99 72.69 189.94 96.07 62.47 71.59 143.14 254.48 176.45 223.26 106.19 122.19 188.87 90.70 161.42 126.24 149.19 73.36 117.97 36 ER7a ExonRegion 0 20.11 49.82 30.02 38.16 34.78 36.68 82.09 49.26 30.88 32.69 78.28 108.24 100.84 115.31 36.27 74.30 94.08 58.20 70.08 61.70 77.13 41.67 58.73 37 ER7b ExonRegion 0 34.43 116.86 98.48 88.12 85.41 85.30 157.72 83.74 69.85 67.39 193.75 281.12 273.97 218.24 63.37 150.17 155.27 104.33 113.47 149.23 132.42 132.38 112.55 38 E7a_E8a KnownJunction 0 30.15 114.26 124.69 75.95 82.85 52.75 132.84 76.56 83.94 61.41 156.78 296.50 265.57 154.98 54.52 94.16 111.17 101.98 64.57 101.12 88.90 93.87 117.63 39 E7a_E11b KnownJunction 0 2.89 12.83 0.00 0.00 3.31 6.64 15.50 0.00 0.00 0.00 22.58 5.85 0.00 13.77 0.00 10.00 14.59 3.23 22.02 22.43 28.91 19.10 13.32 40 ER8a ExonRegion 0 31.97 79.26 91.63 69.98 60.51 71.27 117.76 81.40 67.50 53.40 191.15 260.75 207.42 174.41 59.96 108.94 145.55 104.93 114.16 123.63 93.97 85.56 96.52 41 E8_Da NovelBoundary 0 19.56 6.05 19.57 27.17 3.31 18.40 7.42 0.00 1.79 2.69 0.00 12.60 0.00 0.00 4.45 10.77 3.65 8.25 15.81 10.80 11.06 5.02 8.71 42 E8a_E9a KnownJunction 0 46.23 71.83 86.40 83.41 46.69 52.30 134.34 125.65 78.36 78.68 230.90 192.36 127.59 151.92 73.43 112.45 121.18 103.84 142.12 160.88 137.76 88.42 92.45 43 E8a_E10b KnownJunction 0 0.00 0.00 1.48 0.00 0.00 0.00 2.25 4.89 0.00 0.00 5.37 11.70 0.00 4.36 0.00 3.93 0.00 6.30 0.00 3.26 5.44 2.39 0.00 44 E9_Aa NovelBoundary 0 0.00 2.83 2.90 11.09 0.00 0.00 10.51 1.85 5.01 4.75 2.68 0.00 6.66 0.00 4.45 3.76 0.00 4.35 0.00 0.00 0.00 3.12 12.55 45 ER9a ExonRegion 0 31.36 92.77 96.17 67.19 67.34 62.63 122.33 122.17 82.36 66.03 189.39 210.04 179.43 150.40 67.17 103.12 147.34 89.14 117.42 145.94 162.61 121.66 75.60 46 E9_Da NovelBoundary 0 11.04 12.83 13.81 28.73 3.99 0.00 6.05 3.57 5.09 3.55 0.00 30.91 6.82 2.12 4.45 11.36 8.60 4.68 0.00 2.75 11.98 5.69 8.45 47 E9a_E10b KnownJunction 0 51.94 87.22 94.23 50.91 58.32 68.14 109.04 89.50 71.82 43.81 127.98 134.44 208.75 152.10 86.04 106.81 138.29 98.87 87.06 145.28 107.93 85.91 52.33 48 E9a_E11a KnownJunction 0 3.78 3.29 3.55 1.53 0.00 0.00 13.20 4.76 0.00 1.32 14.21 34.21 0.00 7.30 4.45 3.16 13.18 6.96 7.72 6.39 0.00 2.63 0.00 49 ER10a ExonRegion 0 14.82 31.52 44.11 23.85 25.42 27.51 49.65 45.80 34.58 21.79 82.15 110.40 114.91 84.45 39.17 60.93 74.27 51.74 47.78 76.60 70.52 51.05 32.30 50 ER10b ExonRegion 0 29.75 67.92 111.07 52.73 59.70 57.78 86.25 87.02 69.72 52.64 149.08 182.85 103.41 151.93 65.70 113.66 139.85 140.26 101.32 136.77 190.35 89.19 99.33 51 E10_Da NovelBoundary 0 26.08 23.42 13.81 16.28 8.23 7.61 20.40 23.29 9.11 2.93 9.84 0.00 13.15 9.24 4.45 16.15 8.13 6.26 13.46 12.08 12.11 12.25 25.44 52 E10a_E11a KnownJunction 0 23.86 66.37 106.59 46.35 62.14 72.40 146.66 118.46 70.28 49.88 167.83 155.45 83.92 212.49 97.41 141.42 162.88 150.89 233.14 145.73 205.90 102.57 119.94 53 Ix Intron 0 6.61 15.43 23.23 17.68 13.13 9.41 16.84 12.94 8.22 5.53 12.94 10.20 8.28 17.56 8.27 14.26 18.05 15.99 6.75 5.70 15.98 10.46 9.50 54 Ix_SR1 SilentIntronRegion 0 2.43 16.70 11.52 4.87 9.56 0.82 13.16 5.74 0.97 1.39 3.66 0.18 5.29 9.78 0.00 11.45 11.17 5.54 4.00 0.00 7.31 0.18 3.37 55 Ix_AR2 ActiveIntronRegion 0 6.95 26.15 19.78 12.46 14.53 12.84 31.59 12.59 2.12 2.29 9.11 4.33 4.69 17.40 0.83 18.68 17.45 11.09 11.83 0.00 14.80 2.38 8.81 56 Ix_AR1 ActiveIntronRegion 0 7.12 15.14 24.79 19.38 13.59 10.40 17.03 13.85 9.25 6.12 14.17 11.57 8.76 18.57 9.44 14.56 18.97 17.41 6.99 6.53 17.11 11.90 10.29 57 E11_Aa NovelBoundary 0 6.89 33.74 24.69 21.38 27.50 27.88 18.77 20.54 30.99 6.69 4.42 49.67 0.00 30.31 8.90 23.93 8.60 23.84 4.61 10.93 14.70 3.06 3.50 58 ER11a ExonRegion 0 22.71 64.03 116.85 64.20 58.11 72.63 103.60 102.87 69.21 56.99 162.67 140.87 71.05 195.43 85.37 134.28 160.68 205.18 122.61 142.49 201.05 97.93 108.17 59 E11_Da KnownBoundary 0 24.08 40.98 130.13 74.15 23.77 34.92 47.30 114.64 72.92 47.55 159.99 126.34 58.11 147.04 61.07 131.33 119.40 195.49 94.03 118.18 161.67 100.85 144.52 60 E11a_E11c KnownJunction 0 10.15 3.03 6.45 1.40 19.78 25.44 17.00 6.57 6.51 1.67 2.68 0.00 0.00 5.24 8.90 0.00 3.65 0.00 0.00 8.44 7.54 5.76 7.60 61 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 ER11b ExonRegion 0 24.06 60.81 100.61 55.47 45.36 54.29 82.46 77.48 68.93 53.59 157.90 88.35 65.09 182.22 61.51 121.28 145.84 124.77 105.27 109.17 184.75 82.39 106.52 63 E11_Ab KnownBoundary 0 52.82 123.99 176.31 77.58 51.19 74.05 134.39 113.49 87.01 60.82 166.83 100.23 119.80 149.21 38.07 164.40 106.59 157.52 118.69 113.90 160.07 97.79 120.11 64 ER11c ExonRegion 0 43.92 91.94 113.20 96.36 72.25 77.31 119.52 91.71 82.91 64.28 167.73 95.57 94.26 168.53 56.38 118.19 152.70 125.30 107.48 125.79 170.58 108.09 111.01 65 E11_Db KnownBoundary 0 35.56 95.44 106.86 94.69 58.23 106.93 165.04 76.97 61.72 72.72 202.63 85.38 139.44 141.21 72.69 141.93 163.07 120.80 97.13 125.34 150.24 93.44 116.35 66 ER11d ExonRegion 0 21.24 77.53 126.30 87.63 66.43 71.31 106.11 80.21 59.83 66.48 196.68 97.07 125.01 176.39 53.19 135.40 146.14 122.18 86.28 104.57 122.27 73.87 107.02 67 E11_Dc KnownBoundary 0 26.67 85.38 130.48 86.70 92.44 56.67 114.20 89.17 61.98 76.66 134.98 188.01 211.19 210.61 58.22 187.98 138.10 126.18 110.78 111.92 82.53 103.12 98.17 68 ER11e ExonRegion 0 4.60 10.53 9.26 6.30 6.16 6.85 13.12 5.93 4.46 5.29 9.92 12.07 13.07 13.83 8.33 8.33 9.01 9.99 7.27 9.58 7.27 6.46 8.43 69 E11_Dd KnownBoundary 0 2345.90 2164.02 2885.20 3201.56 2124.28 1117.20 2593.72 3022.56 2919.21 2774.22 1231.68 287.64 547.69 378.95 686.82 2140.55 2690.69 3386.74 1563.24 2208.66 1614.55 997.92 1769.41 70 ER11f ExonRegion 0 32.64 32.95 43.41 20.63 28.41 24.06 38.29 26.08 15.24 18.53 35.66 18.04 16.08 33.15 26.56 26.10 20.03 28.79 34.29 21.75 25.39 26.70 27.69 71 E11_Ac KnownBoundary 0 45.93 49.40 132.82 63.30 57.81 70.98 107.14 88.35 33.39 43.27 88.29 36.46 31.33 65.51 89.13 35.80 37.12 41.99 26.73 59.70 55.11 48.99 63.08 72 ER11g ExonRegion 0 46.44 39.60 22.70 12.68 16.34 27.13 43.92 14.65 7.78 9.46 9.93 9.93 7.14 13.01 18.56 14.60 7.26 15.94 8.21 14.55 6.80 10.80 11.31 73 E11_De KnownBoundary 0 91.50 18.81 9.17 3.86 24.62 7.61 4.33 9.00 5.15 2.74 5.16 0.00 6.66 2.77 0.00 4.36 13.84 0.00 0.00 3.13 2.35 3.00 4.18 74 ER11h ExonRegion 0 1.84 1.00 1.39 0.11 1.74 0.40 2.38 2.30 0.70 0.56 1.37 1.20 0.42 0.47 0.32 0.00 0.00 0.00 0.35 1.39 0.12 0.45 0.48 75 ER12a ExonRegion 0 1.89 2.43 0.54 1.21 0.80 0.03 1.18 0.02 0.55 0.51 1.13 0.00 1.15 1.56 0.61 1.77 0.04 1.67 1.90 0.63 2.00 1.86 1.75