Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 WNT5A Gene 0 15.76 1.98 2.08 1.57 11.27 4.18 3.92 3.98 2.45 1.69 5.43 31.95 0.41 0.44 0.00 0.00 1.09 0.87 2.56 0.41 143.77 306.55 301.26 2 474267 Transcript 0 0.00 0.00 0.00 0.21 0.36 0.46 0.00 0.16 0.62 0.00 0.10 1.45 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 12.98 6.11 14.09 3 442038 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 264634 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 497027 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.54 31.68 63.95 6 482079 Transcript 0 0.19 0.19 0.00 0.00 0.00 0.00 0.49 0.08 0.51 0.06 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 52.07 55.45 136.40 7 497817 Transcript 0 0.39 0.00 0.00 0.00 0.50 0.00 0.74 0.96 0.42 0.64 3.10 12.74 0.00 0.25 0.00 0.00 0.00 0.00 0.81 0.00 14.21 11.83 26.11 8 493406 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.32 0.30 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 I1 Intron 0 0.86 0.00 0.00 0.00 1.09 0.75 0.81 0.00 0.00 0.70 4.34 6.70 0.00 1.15 0.00 0.00 0.00 0.56 3.25 0.43 63.81 25.08 64.12 12 I1_AR1 ActiveIntronRegion 0 0.96 0.00 0.00 0.00 1.21 0.83 0.86 0.00 0.00 0.77 4.64 7.31 0.00 1.28 0.00 0.00 0.00 0.62 3.61 0.48 69.55 27.35 70.02 13 E2_Aa NovelBoundary 0 10.59 3.09 1.83 0.00 0.00 0.00 1.72 1.85 1.62 2.79 13.11 6.30 0.00 7.53 0.00 0.00 9.07 2.24 23.25 0.00 155.37 82.11 244.31 14 ER2a ExonRegion 0 0.00 0.00 0.00 0.84 1.45 0.00 0.00 0.63 2.47 0.00 0.41 5.80 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 51.39 24.12 56.08 15 E2_Ab KnownBoundary 0 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.83 11.39 22.28 16 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.36 12.00 23.30 17 ER2b ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 1.73 1.24 0.00 3.87 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 68.31 29.17 60.20 18 ER2c ExonRegion 0 0.67 0.00 0.66 0.07 0.84 0.87 1.05 1.34 1.08 0.25 2.30 8.61 0.61 0.89 0.00 0.00 1.01 1.25 0.50 0.00 68.69 25.30 73.17 19 E2a_E4c KnownJunction 0 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.97 2.72 0.99 9.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.95 34.72 49.94 20 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.54 24.84 40.83 21 E3_Da NovelBoundary 0 3.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 57.76 32.76 42.17 22 E3a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.55 38.52 87.07 23 I3 Intron 0 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.10 19.82 53.65 24 I3_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.72 20.12 54.42 25 E4_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 106.01 85.42 118.40 26 ER4a ExonRegion 0 0.39 0.37 0.00 0.00 0.00 0.00 0.98 0.17 1.02 0.11 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 104.15 110.91 272.80 27 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.50 33.92 77.68 28 E4_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62.21 14.08 62.06 29 ER4b ExonRegion 0 0.00 0.00 0.61 0.00 0.00 0.00 0.00 4.32 0.62 2.29 6.77 10.82 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 214.86 106.26 265.77 30 ER4c ExonRegion 0 0.81 1.56 1.90 0.00 1.03 2.11 1.52 4.51 5.01 1.69 7.98 16.05 1.48 0.42 0.00 0.00 0.05 0.64 0.00 0.00 343.45 264.70 594.77 31 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.16 0.00 11.58 5.15 2.61 9.16 24.61 0.00 2.30 0.00 0.00 4.02 4.35 0.00 0.00 364.30 248.42 470.86 32 ER5a ExonRegion 0 0.00 0.00 1.26 0.00 0.00 0.00 1.32 6.21 4.24 2.70 18.28 12.17 0.00 0.53 0.00 0.00 0.00 3.70 0.00 1.38 345.92 260.83 469.55 33 E5_Da KnownBoundary 0 0.00 0.00 1.80 0.00 3.99 0.00 1.99 3.94 3.70 4.73 17.21 5.55 0.00 0.00 0.00 0.00 0.00 3.86 0.00 3.26 332.30 263.37 496.56 34 E5a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5b ExonRegion 0 3.73 1.07 1.52 0.00 1.75 1.31 1.03 3.25 4.19 1.15 9.66 22.27 0.00 0.93 0.00 0.00 1.57 1.54 1.71 0.78 358.20 220.42 378.33 36 E5_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 4.32 6.30 0.00 0.00 0.00 0.00 0.00 0.00 4.71 0.00 17.05 2.94 52.41 37 E5b_E6a KnownJunction 0 6.52 2.76 0.00 0.00 3.57 0.00 0.00 1.89 1.27 1.07 2.68 17.56 0.00 0.00 0.00 0.00 0.00 1.53 4.71 0.00 286.40 191.91 366.21 38 ER5c ExonRegion 0 0.39 0.00 0.00 0.00 0.50 0.00 0.74 0.96 0.42 0.64 3.10 12.74 0.00 0.25 0.00 0.00 0.00 0.00 0.81 0.00 14.21 11.83 26.11 39 E5_Dc NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 37.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.85 17.27 12.04 40 I5 Intron 0 1.58 0.37 0.19 0.08 0.63 0.29 0.78 0.64 0.41 0.18 2.68 15.07 0.44 0.16 0.00 0.35 0.69 0.48 0.75 0.03 29.78 21.17 34.17 41 I5_SR1 SilentIntronRegion 0 1.58 0.37 0.19 0.08 0.63 0.29 0.78 0.64 0.41 0.18 2.68 15.07 0.44 0.16 0.00 0.35 0.69 0.48 0.75 0.03 29.80 21.18 34.19 42 ER6a ExonRegion 0 1.70 0.99 0.95 0.00 1.05 2.55 0.26 1.00 0.32 2.04 2.84 10.52 0.05 0.84 0.00 0.00 0.00 0.99 1.63 0.37 261.52 130.34 295.24 43 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 1.40 5.05 0.00 0.00 2.47 0.00 0.00 0.00 2.40 4.80 0.00 274.04 189.27 440.30 44 ER6b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER7a ExonRegion 0 3.93 1.05 0.31 0.00 0.46 2.32 0.54 0.94 1.00 0.67 6.44 4.07 1.28 1.24 0.00 0.00 0.00 2.97 1.32 0.87 301.32 115.81 320.88 46 E7_Ab KnownBoundary 0 9.41 9.67 23.80 3.50 4.07 8.29 15.06 3.33 6.22 3.22 32.80 6.30 0.00 0.00 5.69 0.00 56.85 10.11 0.00 12.21 340.64 184.80 424.17 47 ER7b ExonRegion 0 0.17 0.92 0.42 0.00 1.25 6.43 2.91 1.91 0.99 2.28 7.41 4.79 0.00 0.13 0.00 0.00 1.81 1.52 0.25 1.07 367.84 172.16 312.87 48 E7_Ac KnownBoundary 0 7.56 9.93 30.34 7.86 15.62 17.15 30.30 4.23 3.15 10.77 59.23 33.31 0.00 8.30 5.93 0.00 36.47 7.71 4.80 16.23 418.42 181.01 355.54 49 ER7c ExonRegion 0 1.77 2.90 0.46 0.03 4.38 1.78 1.89 2.20 1.35 3.67 8.34 8.40 0.00 1.72 0.00 0.00 3.17 2.28 3.38 1.63 298.55 203.45 373.72 50 E7_Da KnownBoundary 0 10.59 5.92 1.83 0.00 3.31 0.00 0.00 2.55 1.74 5.48 8.90 11.40 0.00 2.47 0.00 0.00 3.55 3.98 3.95 0.00 293.87 246.89 364.93 51 ER7d ExonRegion 0 5.36 4.32 0.00 1.95 9.01 0.00 2.67 4.37 1.71 5.17 17.00 13.25 0.00 0.70 0.00 0.00 5.39 2.07 2.60 0.00 238.05 283.95 387.10 52 E7_Db KnownBoundary 0 10.37 2.63 0.00 3.60 4.33 0.00 4.20 6.12 2.92 3.76 12.42 6.60 0.00 0.00 0.00 0.00 4.58 2.57 0.00 0.00 111.69 305.56 276.75 53 ER7e ExonRegion 0 12.25 0.14 1.49 2.01 7.12 2.60 4.97 3.04 1.32 1.86 4.44 25.18 0.00 0.96 0.00 0.00 1.60 0.52 3.16 0.76 65.72 377.67 237.66 54 E7_Dc KnownBoundary 0 28.67 0.00 1.54 1.80 0.00 0.00 5.21 7.27 2.92 0.00 0.00 70.07 0.00 0.00 0.00 0.00 0.00 0.00 4.05 0.00 37.87 373.71 195.91 55 E7c_E7d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER7f ExonRegion 0 11.31 2.28 0.29 1.39 9.03 1.20 3.89 3.18 4.57 1.41 6.78 46.05 0.00 0.29 0.00 0.00 0.00 0.00 3.16 0.46 104.26 431.18 306.16 57 E7_Ad KnownBoundary 0 9.48 0.00 0.00 3.96 12.22 0.00 6.32 6.61 6.05 3.14 9.11 56.72 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 132.08 527.34 515.85 58 ER7g ExonRegion 0 12.99 2.33 1.63 2.55 16.38 5.39 5.82 5.30 4.79 1.27 10.29 83.26 0.00 0.30 0.00 0.00 1.47 0.61 8.23 1.55 178.75 546.18 498.25 59 E7_Dd KnownBoundary 0 20.89 2.96 0.00 2.06 24.45 2.33 3.36 4.72 2.66 1.24 9.42 95.88 0.00 0.00 0.00 0.00 0.00 0.00 22.78 2.88 67.28 457.05 330.27 60 ER7h ExonRegion 0 25.63 2.82 3.25 2.47 17.88 6.21 5.72 5.61 2.87 2.13 5.69 43.23 0.53 0.32 0.00 0.00 1.42 0.77 3.23 0.35 118.79 407.85 332.63 61 ER7i ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00