Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACTR8 Gene 0 38.02 71.07 41.44 37.04 48.07 60.22 59.64 28.89 22.23 32.01 99.48 103.21 111.00 132.07 110.51 91.31 105.71 61.63 64.93 91.68 61.15 65.39 59.35 2 335754 Transcript 0 7.74 30.04 11.55 11.55 11.72 10.59 15.31 5.00 3.81 4.29 14.52 15.71 27.69 13.05 26.13 5.20 12.59 6.29 11.51 20.44 3.52 8.65 5.07 3 231909 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 498740 Transcript 0 0.00 0.06 0.00 0.00 0.04 0.40 0.06 0.00 0.00 0.00 6.45 0.00 0.00 0.12 0.00 0.09 0.29 0.05 0.09 0.00 4.80 0.00 0.26 5 482349 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 486794 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 495993 Transcript 0 3.98 3.24 6.41 7.29 6.65 3.40 3.99 0.61 0.28 4.00 20.53 9.13 11.41 21.77 20.07 9.88 17.71 10.29 11.45 11.07 9.74 8.67 12.02 8 488802 Transcript 0 15.69 10.06 14.84 5.61 6.72 14.44 15.49 4.15 4.45 5.77 11.69 6.96 8.15 17.60 21.18 24.13 20.65 13.96 16.05 10.42 10.85 11.81 13.09 9 ER1a ExonRegion 0 0.39 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 1.75 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.99 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 1 15.75 34.49 13.07 16.93 29.49 64.62 42.28 9.94 12.69 23.48 89.01 12.89 40.55 79.51 74.23 125.04 139.90 102.24 86.00 72.50 85.51 30.83 88.49 12 E1a_E3a KnownJunction 1 6.59 5.39 6.45 10.29 0.00 4.66 9.94 13.39 19.33 36.96 198.84 22.51 12.82 96.42 41.54 18.54 245.82 44.31 12.05 84.50 145.61 10.35 15.79 13 ER2a ExonRegion 0 0.00 0.12 0.00 0.00 0.08 0.81 0.12 0.00 0.00 0.00 0.63 0.00 0.00 0.24 0.00 0.17 0.58 0.11 0.19 0.00 0.52 0.00 0.52 14 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2b ExonRegion 0 0.00 1.29 0.59 0.00 0.85 9.30 0.84 0.00 0.00 0.00 8.51 0.03 1.25 2.09 0.66 3.82 4.26 1.46 0.99 2.75 4.39 0.67 5.58 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.08 0.00 0.00 17 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 1 5.63 14.29 13.96 20.69 5.07 4.10 12.61 10.96 15.99 34.59 199.24 11.96 23.57 173.74 89.86 93.54 299.25 40.60 53.40 132.31 158.84 44.36 82.30 19 E3_Ab KnownBoundary 1 6.59 28.15 20.28 32.90 4.16 5.05 16.25 14.95 18.52 35.03 174.78 17.26 33.11 322.62 187.03 162.86 323.70 41.87 110.21 156.28 175.94 79.11 169.02 20 ER3b ExonRegion 0 6.73 42.51 37.77 28.75 40.98 67.00 51.45 25.46 26.62 31.05 105.32 74.15 102.97 161.41 135.88 156.81 160.18 84.79 67.99 113.52 87.97 65.92 99.85 21 E3a_E4a KnownJunction 0 0.00 66.90 44.47 33.26 111.55 279.73 183.14 25.01 42.65 36.48 145.88 77.58 144.47 183.71 159.10 108.01 187.94 83.28 74.36 139.98 102.30 90.07 54.46 22 E4_Aa NovelBoundary 0 10.08 2.63 1.80 1.70 7.56 5.79 25.84 0.00 3.59 2.58 14.32 17.86 34.90 27.31 4.70 8.72 0.00 2.45 3.58 5.56 0.00 3.12 8.71 23 ER4a ExonRegion 0 26.60 90.96 53.01 41.57 62.39 120.39 88.34 38.90 37.11 41.38 173.58 156.09 164.07 202.02 150.79 130.69 202.48 83.80 86.32 154.02 120.31 108.85 70.66 24 E4a_E5a KnownJunction 0 50.68 107.02 53.84 35.39 16.04 61.04 44.60 33.60 26.10 53.97 124.77 192.36 186.35 192.07 169.73 157.65 231.60 92.15 99.58 105.85 90.57 92.65 115.24 25 ER5a ExonRegion 0 42.29 79.06 45.22 42.38 35.27 47.29 59.02 36.23 34.63 44.57 187.66 200.35 212.79 227.89 146.83 151.89 183.97 73.89 125.38 128.55 103.24 121.48 83.82 26 E5a_E6a KnownJunction 0 41.34 103.93 51.71 48.84 62.39 64.05 66.60 26.29 21.67 38.41 170.10 225.37 232.94 199.60 223.38 116.29 214.96 46.84 137.32 132.56 75.24 146.72 52.50 27 ER6a ExonRegion 0 34.31 96.31 34.52 39.97 46.67 49.20 91.59 33.84 30.12 50.07 158.38 227.37 192.49 183.03 148.57 111.25 155.18 57.34 90.63 99.10 59.62 113.28 82.57 28 E6_Ab KnownBoundary 0 47.05 73.87 36.22 36.36 65.28 52.30 109.66 18.03 31.45 33.04 141.61 142.40 246.25 198.42 140.31 156.28 153.25 54.26 91.77 71.14 53.25 109.42 81.61 29 ER6b ExonRegion 0 45.32 92.11 34.67 44.17 57.45 78.96 82.90 45.04 34.47 42.50 136.38 236.21 230.23 197.52 128.42 141.88 162.52 56.68 95.28 100.06 48.35 126.54 62.01 30 E6_Da KnownBoundary 1 56.38 146.95 24.93 45.88 52.38 106.70 88.72 60.05 22.57 40.43 123.98 361.32 253.72 204.55 135.86 110.23 179.15 32.87 110.40 112.37 33.55 126.32 43.02 31 ER6c ExonRegion 0 49.24 127.48 44.17 47.61 69.45 103.75 87.73 53.97 34.80 50.57 162.32 255.82 244.40 217.31 169.43 129.32 170.40 40.28 124.44 96.41 48.73 145.11 54.30 32 E6b_E7a KnownJunction 0 78.61 127.87 54.23 57.37 109.00 107.44 106.74 55.49 34.09 52.41 168.99 285.69 318.49 231.56 190.37 143.81 120.24 48.79 145.13 114.67 69.31 160.19 82.89 33 ER7a ExonRegion 0 69.42 86.36 50.66 46.47 70.82 74.95 87.41 51.19 36.24 49.68 171.90 273.82 286.39 264.61 184.57 171.28 170.38 74.79 90.21 126.23 64.63 145.58 86.76 34 E7a_E8a KnownJunction 0 79.64 57.62 54.23 50.58 52.29 65.25 69.69 52.12 25.03 48.78 154.41 240.53 186.19 207.31 171.21 145.94 199.72 113.83 94.69 154.74 53.50 126.57 83.23 35 ER8a ExonRegion 0 54.55 94.80 55.25 50.07 53.80 61.18 78.44 49.49 30.71 49.45 201.54 232.55 208.55 260.37 177.04 148.47 225.73 105.22 87.92 142.10 122.02 128.57 89.51 36 E8a_E9a KnownJunction 0 53.79 79.33 65.96 60.07 90.58 55.03 88.55 50.73 55.18 49.91 235.53 286.29 247.39 308.91 201.87 133.81 225.81 102.85 87.25 186.19 113.18 112.42 138.80 37 E8a_E10a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 1.99 0.00 0.00 2.61 14.95 0.00 0.00 0.00 0.00 0.00 8.79 4.68 0.00 0.00 0.00 0.00 0.00 38 ER9a ExonRegion 0 52.21 88.62 61.57 61.82 82.37 95.68 93.30 55.29 38.06 56.67 238.14 262.16 267.91 299.30 217.65 225.57 243.88 126.91 131.55 157.57 137.10 141.96 155.13 39 E9a_E10a NovelJunction 0 11.04 14.80 17.56 9.46 10.78 5.22 8.79 4.03 13.74 2.20 9.84 0.00 27.11 10.36 22.99 12.73 11.13 9.87 8.66 17.71 8.22 12.49 11.69 40 E9a_E10b KnownJunction 0 56.38 88.67 69.36 63.99 36.16 75.47 101.04 23.17 41.61 41.99 194.42 229.27 256.96 253.05 184.19 155.86 170.73 104.67 56.10 166.18 108.98 94.30 115.92 41 E10_Ab NovelBoundary 0 7.04 2.70 12.74 7.06 3.65 2.90 8.35 2.55 0.00 3.65 14.42 6.15 33.11 22.31 13.60 12.73 19.64 13.76 27.11 9.65 8.59 6.25 4.35 42 ER10a ExonRegion 0 3.60 5.29 7.72 4.77 5.89 4.58 9.40 1.47 2.22 6.14 27.16 16.24 29.31 24.85 17.55 14.12 22.78 17.55 18.63 15.96 11.35 8.75 7.49 43 ER10b ExonRegion 0 70.96 88.93 78.17 59.97 69.98 54.55 69.16 34.31 42.87 56.86 209.28 191.16 215.26 279.87 166.11 145.84 200.35 139.46 120.13 148.72 120.79 105.52 127.12 44 E10_Ac KnownBoundary 0 94.09 86.96 93.96 73.62 81.58 58.43 62.18 62.15 58.82 89.05 154.25 158.45 318.65 259.46 140.43 162.18 173.63 138.08 157.28 93.77 80.50 72.01 136.32 45 ER10c ExonRegion 0 116.47 106.54 83.19 65.83 89.79 89.35 69.47 66.16 53.97 77.00 203.65 251.71 318.79 305.24 215.26 259.15 218.96 141.71 193.07 111.35 137.98 157.71 193.82 46 E10a_E11a KnownJunction 0 219.82 166.68 96.77 74.78 139.30 114.82 103.34 79.03 53.53 77.25 252.01 370.02 384.72 407.44 394.71 361.36 294.34 156.65 250.17 152.38 187.12 252.53 292.97 47 ER11a ExonRegion 0 105.77 113.69 62.67 67.54 83.01 81.96 90.17 41.45 43.24 45.01 176.14 187.92 255.79 279.26 219.88 207.14 180.59 119.75 109.36 135.81 131.07 125.48 143.27 48 E11a_E12a KnownJunction 0 78.09 111.76 65.93 62.76 87.44 122.15 97.42 37.62 38.43 40.51 138.61 68.42 90.09 209.90 259.47 181.49 153.81 118.60 136.76 124.70 120.47 104.16 138.20 49 ER12a ExonRegion 0 61.11 102.15 64.18 55.74 71.15 66.87 65.09 48.40 33.48 44.43 161.50 80.84 135.92 227.38 214.22 159.71 169.82 104.30 81.59 123.86 117.53 90.35 89.56 50 E12_Da KnownBoundary 0 3.33 9.87 19.87 18.75 23.94 7.21 8.13 5.91 1.30 8.76 24.37 19.66 0.00 51.39 70.21 15.98 17.77 25.08 29.18 17.32 17.11 23.15 18.52 51 E12a_E13b KnownJunction 0 48.90 114.85 46.24 38.52 66.72 63.71 43.85 35.28 26.10 51.09 136.19 61.07 62.82 200.90 230.42 97.07 89.76 84.48 74.26 78.68 91.18 78.20 78.88 52 ER12b ExonRegion 0 3.98 3.24 6.41 7.29 6.65 3.40 3.99 0.61 0.28 4.00 20.53 9.13 11.41 21.77 20.07 9.88 17.71 10.29 11.45 11.07 9.74 8.67 12.02 53 E12_Db NovelBoundary 0 6.96 9.34 16.62 16.28 3.31 2.38 8.97 14.17 9.06 4.59 16.27 6.30 16.40 7.06 8.90 4.36 21.60 17.00 23.44 17.26 6.30 2.33 17.41 54 E13_Aa NovelBoundary 0 14.22 6.71 11.27 3.20 0.00 0.00 1.72 0.00 0.00 1.18 20.58 0.00 0.00 43.56 14.46 20.93 26.09 18.94 11.95 8.50 3.09 13.17 20.49 55 ER13a ExonRegion 0 15.69 10.06 14.84 5.61 6.72 14.44 15.49 4.15 4.45 5.77 11.69 6.96 8.15 17.60 21.18 24.13 20.65 13.96 16.05 10.42 10.85 11.81 13.09 56 E13_Ab KnownBoundary 0 15.85 16.51 22.35 11.05 6.54 51.11 11.66 4.35 0.00 4.14 20.74 31.51 5.84 41.32 28.80 17.94 26.18 32.08 21.18 8.63 17.48 16.29 7.60 57 ER13b ExonRegion 0 91.91 118.25 81.49 51.88 68.81 82.58 67.29 42.28 33.77 56.22 179.49 106.46 108.56 232.91 240.43 150.72 167.58 122.61 97.65 121.03 116.47 87.20 86.84 58 E13a_E14a KnownJunction 0 111.06 116.89 55.41 31.56 89.64 63.37 107.27 21.60 28.65 33.58 150.88 95.88 101.45 219.79 278.39 171.41 196.07 99.90 172.80 139.66 118.24 108.08 102.18 59 ER14a ExonRegion 0 48.56 104.90 62.71 51.45 63.49 79.32 69.73 41.34 25.08 38.12 107.43 110.30 116.07 149.77 190.90 83.55 128.20 64.02 74.08 118.42 83.35 83.61 56.61 60 E14_Da KnownBoundary 0 43.56 105.24 70.16 65.89 86.08 74.90 103.96 40.50 20.92 37.90 57.59 117.94 124.34 77.93 115.09 88.52 81.07 38.63 52.61 136.08 42.32 98.46 50.79 61 ER14b ExonRegion 0 58.58 91.65 34.67 52.74 63.74 68.14 72.03 37.19 21.08 31.09 59.33 85.59 93.37 78.76 87.58 54.60 77.93 47.74 56.70 120.60 24.80 49.77 41.04 62 E14_Db KnownBoundary 0 33.19 53.74 22.38 18.61 29.71 37.88 56.79 19.18 5.70 17.03 28.32 6.30 21.91 30.78 39.43 35.46 26.37 19.86 12.99 41.61 13.47 29.58 20.49 63 E14_Dc KnownBoundary 0 23.71 44.01 12.54 23.64 15.11 30.15 27.82 21.44 12.24 16.20 18.69 24.91 13.64 34.02 25.59 34.61 25.81 23.05 13.55 51.13 14.83 51.19 33.89 64 ER14c ExonRegion 0 39.16 75.92 27.16 39.30 33.45 60.21 76.79 34.86 13.17 27.53 57.99 38.24 72.70 74.71 69.63 68.36 49.51 44.04 23.89 92.55 23.87 76.05 46.50 65 ER14d ExonRegion 0 26.99 67.36 38.14 33.11 45.54 59.93 61.90 22.54 16.49 25.31 48.09 76.41 70.65 68.04 54.87 40.76 40.10 36.15 44.01 75.23 23.74 39.25 29.52 66 E14_Dd KnownBoundary 1 34.67 145.96 54.76 55.80 48.64 51.50 65.32 29.20 20.66 20.55 26.90 64.97 117.20 48.03 73.80 28.28 51.71 18.07 60.71 81.75 5.44 44.52 15.79 67 ER14e ExonRegion 1 15.09 60.09 23.10 23.10 23.43 21.18 29.98 10.01 7.63 8.58 27.28 31.42 55.37 26.06 52.27 10.40 25.18 12.58 23.02 40.87 7.04 17.31 10.14 68 IG20 Intergenic 0 16.77 103.09 29.08 20.93 43.64 29.90 36.05 13.87 9.49 17.09 15.31 47.11 42.69 37.16 48.14 15.33 18.54 8.77 21.32 45.99 5.59 20.19 12.88 69 IG20_AR3 ActiveIntergenicRegion 0 12.08 46.43 25.22 17.95 33.01 30.38 36.56 9.48 6.77 11.33 18.86 50.39 54.28 37.63 39.50 13.68 19.45 10.84 24.05 43.09 4.06 17.64 9.73 70 IG20_SR1 SilentIntergenicRegion 0 13.88 59.29 0.00 0.00 46.79 29.39 29.90 0.00 0.00 0.00 12.67 16.14 30.95 56.73 53.22 19.49 14.43 0.00 20.89 18.60 11.21 13.66 19.26 71 IG20_AR1 ActiveIntergenicRegion 0 21.64 163.48 39.15 28.37 52.58 29.76 37.20 20.92 14.05 26.09 12.87 51.43 35.34 32.63 54.94 15.95 18.75 8.96 19.14 54.95 5.73 24.03 14.31