Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EXOSC7 Gene 0 45.69 46.29 51.25 38.82 26.56 19.85 31.34 30.09 14.92 18.41 74.45 29.52 23.25 72.85 92.56 57.18 73.86 50.94 39.56 32.33 43.35 27.13 25.34 2 461361 Transcript 0 0.92 0.44 0.03 0.03 0.90 1.20 2.89 0.56 1.96 1.07 0.84 0.07 3.41 0.29 2.82 0.65 0.72 1.49 4.11 3.21 4.66 0.00 1.92 3 477865 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 482004 Transcript 0 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.05 0.00 0.00 0.00 0.00 0.00 0.00 5 265564 Transcript 0 2.50 2.68 1.56 0.81 0.85 9.42 2.71 0.00 0.00 0.00 8.79 0.00 0.00 6.42 17.80 3.78 5.85 0.59 0.00 3.38 4.51 0.19 1.20 6 467846 Transcript 1 15.49 29.15 7.67 13.86 15.31 5.52 23.35 16.57 11.33 6.92 20.95 42.26 43.34 20.81 8.31 18.47 25.03 9.72 15.90 8.98 13.32 14.95 11.29 7 468667 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 491476 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 481405 Transcript 0 0.00 0.00 0.00 0.10 0.00 0.00 0.12 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.21 0.00 0.00 10 498168 Transcript 0 0.50 6.04 4.56 5.88 4.69 0.15 3.72 3.32 2.01 1.21 2.57 2.25 9.49 0.70 5.70 5.11 4.65 11.29 2.24 6.49 5.86 1.30 4.13 11 478912 Transcript 0 4.72 2.14 1.31 1.56 1.87 0.52 3.47 1.99 0.43 0.20 1.96 0.43 0.29 2.04 3.47 3.84 1.78 1.10 1.30 0.75 1.55 0.45 1.80 12 486727 Transcript 0 48.55 42.70 26.55 41.77 28.50 12.59 36.97 31.35 21.18 20.69 18.31 28.67 26.57 18.60 21.04 25.27 26.86 26.79 18.54 24.43 18.74 16.49 22.64 13 459856 Transcript 0 16.22 15.59 20.49 13.33 5.35 5.71 6.64 9.03 3.71 7.16 33.29 4.81 6.25 32.64 48.52 28.82 32.64 21.35 19.11 13.08 22.77 9.03 6.53 14 ER1a ExonRegion 0 1.85 0.89 0.05 0.07 1.81 2.40 5.77 1.12 0.80 0.48 1.69 0.15 0.00 0.58 1.19 1.30 1.44 2.98 4.17 0.93 4.12 0.00 0.00 15 E1_Ab KnownBoundary 0 0.00 2.70 0.00 0.00 4.33 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 4.45 0.00 0.00 8.71 0.00 0.00 5.56 0.00 0.00 16 ER1b ExonRegion 0 0.00 0.00 1.62 0.86 1.78 1.39 2.35 0.00 0.38 0.52 0.87 2.65 0.34 1.23 3.03 0.00 0.00 4.03 2.93 1.13 5.14 0.00 0.00 17 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.67 0.00 0.00 6.82 0.00 4.45 0.00 0.00 0.00 4.05 5.50 5.19 0.00 3.84 18 E1a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER1c ExonRegion 0 0.00 0.25 0.00 0.00 0.00 3.67 1.16 0.00 2.47 1.15 0.24 0.00 5.28 0.00 2.90 0.00 0.00 0.00 0.00 4.26 10.47 0.00 0.00 20 E1b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER1d ExonRegion 0 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 22 ER2a ExonRegion 0 2.50 2.68 1.56 0.81 0.85 9.42 2.71 0.00 0.00 0.00 8.79 0.00 0.00 6.42 17.80 3.78 5.85 0.59 0.00 3.38 4.51 0.19 1.20 23 E2_Ac KnownBoundary 0 3.78 0.00 0.00 2.06 0.00 17.04 4.02 0.00 0.00 0.00 10.69 0.00 0.00 0.00 12.61 4.27 4.77 4.73 0.00 3.26 9.45 0.00 0.00 24 E2_Ad KnownBoundary 1 194.85 193.91 83.76 33.26 111.12 245.94 178.37 30.27 14.90 26.24 334.98 0.00 5.84 246.45 524.63 175.42 345.68 152.22 126.87 119.14 174.83 21.80 116.18 25 ER2b ExonRegion 1 34.19 34.73 19.13 9.96 20.38 53.46 26.99 4.39 1.81 4.76 63.19 0.00 1.08 46.97 114.04 29.26 62.46 20.47 13.48 20.46 33.90 4.81 18.52 26 ER2c ExonRegion 1 136.16 144.05 75.67 36.91 85.62 176.96 126.99 22.90 12.04 23.80 273.99 0.00 4.69 197.20 394.81 124.58 289.38 140.89 81.23 95.57 157.38 22.05 94.71 27 ER2d ExonRegion 1 229.72 166.37 127.95 62.88 113.21 181.36 170.33 46.31 22.19 44.81 343.92 4.18 3.48 196.91 369.96 237.87 400.55 245.53 120.66 156.90 199.85 60.31 118.02 28 E2a_E4a KnownJunction 0 102.91 41.44 123.12 56.04 64.01 18.06 37.19 57.75 18.72 34.71 81.65 17.86 12.99 56.57 85.42 104.84 70.50 185.55 56.10 28.44 49.48 30.62 15.88 29 E2a_E6a KnownJunction 0 2.89 0.00 0.00 3.60 16.13 0.00 2.25 1.68 0.00 8.17 2.00 0.00 0.00 0.00 5.56 0.00 4.68 4.27 0.00 0.00 0.00 3.12 0.00 30 E3_Aa NovelBoundary 0 3.26 5.59 2.96 13.05 14.52 7.67 12.01 7.43 4.92 1.67 2.68 14.25 0.00 4.94 8.78 4.19 13.37 11.86 17.69 6.39 15.07 6.00 4.35 31 ER3a ExonRegion 0 0.99 8.79 5.81 11.76 5.30 0.31 7.44 4.54 4.02 1.34 5.14 4.50 12.16 1.40 6.95 10.23 9.30 16.06 4.48 12.98 11.71 2.61 8.27 32 E3_Da NovelBoundary 0 6.45 11.64 5.50 7.76 4.07 0.00 10.16 1.73 0.00 5.53 5.00 0.00 13.64 0.00 5.07 19.82 8.60 16.17 7.91 6.01 5.75 3.06 0.00 33 E3a_E4a KnownJunction 0 0.00 3.29 3.31 0.00 4.07 0.00 0.00 2.09 0.00 1.07 0.00 0.00 6.82 0.00 4.45 0.00 0.00 6.51 0.00 0.00 0.00 0.00 0.00 34 I3_AR2 ActiveIntronRegion 0 4.76 10.90 7.23 9.75 5.25 1.23 11.85 6.23 5.92 1.71 4.66 14.82 10.22 2.64 4.45 8.92 9.86 15.21 9.25 7.70 5.79 3.62 5.73 35 ER4a ExonRegion 1 83.81 40.26 126.95 60.24 43.35 19.07 33.63 50.47 24.70 34.18 62.63 8.66 18.76 37.35 86.46 75.49 67.34 204.36 38.86 31.06 52.89 29.17 18.79 36 ER4b ExonRegion 1 25.92 30.65 113.49 42.61 12.83 9.47 10.85 48.79 20.11 25.10 237.25 33.39 30.61 70.21 91.67 37.11 215.85 70.81 45.91 49.40 137.65 19.29 17.35 37 E4a_E5a KnownJunction 1 62.23 54.73 204.40 92.63 15.53 18.46 3.80 96.07 30.27 51.25 645.90 51.17 61.85 290.25 340.19 88.27 740.44 113.08 107.01 175.13 353.68 53.52 33.55 38 ER4c ExonRegion 0 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 3.25 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 39 ER5a ExonRegion 1 78.22 62.16 237.35 107.73 36.11 25.63 28.81 110.46 31.36 55.84 353.78 65.17 35.35 373.55 528.18 312.45 357.61 270.74 181.97 148.71 183.84 103.30 134.47 40 E5a_E6a KnownJunction 1 32.89 75.18 241.62 119.70 44.06 49.23 42.75 118.54 35.21 41.50 237.69 88.68 27.76 219.03 225.73 238.66 233.38 349.45 112.10 84.37 139.31 75.56 76.74 41 ER6a ExonRegion 0 88.26 162.31 210.00 120.66 107.50 142.43 113.16 108.01 37.22 53.17 292.90 91.18 48.79 320.65 316.45 203.47 286.76 202.14 163.84 116.57 172.41 112.65 67.01 42 E6a_E8b KnownJunction 0 187.51 212.86 191.92 138.71 35.99 67.35 76.84 125.07 42.39 63.85 296.71 132.19 107.95 443.35 474.07 222.16 222.16 274.88 162.26 101.24 158.77 135.51 110.97 43 E6a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER7a ExonRegion 0 3.24 0.00 0.93 1.04 5.46 0.00 2.70 1.31 0.00 0.00 1.97 0.00 0.00 0.68 3.13 7.52 0.00 0.00 0.00 1.09 1.12 0.00 3.00 45 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E8_Aa NovelBoundary 0 374.88 554.37 384.11 332.26 343.63 390.17 594.21 353.03 352.34 339.43 139.56 59.72 94.96 95.71 138.70 376.14 281.72 337.31 278.97 496.00 207.08 173.54 360.74 47 ER8a ExonRegion 0 10.93 6.41 3.00 3.64 0.15 1.57 7.71 4.65 1.28 0.60 3.90 1.29 0.86 5.45 7.28 4.00 5.33 3.29 3.89 1.17 3.54 1.34 2.40 48 E8_Ab KnownBoundary 0 0.00 3.22 2.42 4.06 0.00 0.00 1.77 4.27 0.00 0.00 0.00 0.00 0.00 2.47 4.45 0.00 0.00 2.57 4.61 0.00 0.00 0.00 0.00 49 ER8b ExonRegion 0 216.91 155.89 205.79 131.95 47.82 73.80 67.84 104.15 38.76 63.39 386.44 126.85 72.96 373.71 389.18 248.47 342.68 219.25 149.26 132.04 167.80 99.65 84.66 50 E8_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E8a_E9b KnownJunction 0 274.64 115.11 218.74 125.72 76.83 84.50 69.29 94.80 29.54 54.29 382.78 127.09 60.71 435.75 419.80 203.54 362.22 195.99 137.51 98.43 191.39 76.97 97.57 52 ER8c ExonRegion 1 5.74 21.49 7.31 18.39 12.52 8.28 18.99 14.58 11.49 8.70 12.47 30.11 28.31 19.45 9.78 23.46 18.85 13.77 13.83 7.58 7.55 19.36 10.69 53 E8_Db KnownBoundary 1 16.00 50.19 7.07 21.41 7.47 16.01 33.30 22.59 12.99 7.28 4.63 29.71 66.55 7.36 8.90 18.03 7.85 9.82 0.00 2.56 2.84 23.39 8.28 54 ER8d ExonRegion 1 15.49 29.15 7.67 13.86 15.31 5.52 23.35 16.57 11.33 6.92 20.95 42.26 43.34 20.81 8.31 18.47 25.03 9.72 15.90 8.98 13.32 14.95 11.29 55 E8_Dc NovelBoundary 0 10.74 24.93 19.01 21.88 24.79 12.32 35.99 22.18 11.26 10.29 22.11 44.71 27.27 28.72 24.85 12.48 17.58 9.00 8.19 11.38 11.00 19.35 12.12 56 Ix Intron 0 9.66 17.31 12.27 20.52 10.25 7.77 15.32 16.47 10.50 8.49 21.26 24.49 23.96 25.25 13.95 25.42 22.46 27.95 17.65 9.45 20.91 16.81 13.52 57 Ix_AR1 ActiveIntronRegion 0 9.36 10.12 2.02 3.38 2.97 6.10 13.21 2.86 2.04 1.88 6.43 23.15 26.15 10.86 8.42 6.59 5.45 2.05 12.33 2.36 2.44 4.62 6.51 58 Ix_AR2 ActiveIntronRegion 0 6.84 11.26 1.32 2.10 1.65 2.68 2.55 0.00 1.05 0.00 4.31 4.66 10.10 3.37 1.79 0.23 1.78 3.27 2.70 0.00 1.53 16.99 0.68 59 Ix_SR2 SilentIntronRegion 0 19.59 20.65 9.30 16.93 15.75 7.29 11.02 16.58 17.59 3.48 16.33 61.78 67.46 14.53 10.71 12.27 15.74 6.63 6.41 8.67 9.80 27.17 5.01 60 Ix_AR3 ActiveIntronRegion 0 9.63 17.76 14.56 23.07 9.50 7.86 18.09 20.27 10.66 10.11 24.65 29.64 23.55 28.13 13.13 27.14 25.02 25.87 19.29 10.31 21.92 16.19 12.56 61 Ix_SR3 SilentIntronRegion 0 12.63 13.01 9.05 14.43 2.41 2.57 6.18 14.94 11.99 5.31 16.15 5.77 6.77 21.67 18.92 23.94 17.82 30.06 13.77 11.32 11.36 15.90 6.23 62 Ix_AR4 ActiveIntronRegion 0 6.59 19.19 12.58 23.61 15.28 9.92 14.30 13.52 10.85 9.53 21.87 10.82 18.91 28.04 17.26 32.17 25.93 45.94 20.30 9.77 30.63 19.45 22.46 63 E9_Aa NovelBoundary 0 9.71 17.50 13.78 36.86 12.05 0.00 22.13 20.09 1.10 6.39 12.37 12.00 20.13 21.01 39.68 36.66 38.24 3.77 38.12 3.13 11.61 20.21 10.84 64 ER9a ExonRegion 0 48.55 42.70 26.55 41.77 28.50 12.59 36.97 31.35 21.18 20.69 18.31 28.67 26.57 18.60 21.04 25.27 26.86 26.79 18.54 24.43 18.74 16.49 22.64 65 E9_Ab KnownBoundary 0 133.65 15.66 19.10 60.07 32.77 4.37 26.41 29.82 9.84 10.40 21.64 12.15 26.13 18.95 8.90 34.26 11.78 30.51 16.28 10.10 17.05 9.31 20.40 66 ER9b ExonRegion 0 259.22 180.14 230.37 171.09 86.13 54.40 89.40 122.72 39.61 72.99 399.51 118.24 64.71 474.78 502.30 338.72 311.50 258.00 221.69 119.91 170.84 143.96 104.36 67 E9_Da KnownBoundary 0 303.61 250.09 220.34 177.43 124.79 17.72 119.06 124.91 46.35 75.46 375.78 168.50 90.58 483.49 592.99 389.73 372.04 269.57 259.58 156.15 164.70 151.68 103.72 68 ER9c ExonRegion 0 204.27 191.99 204.17 133.88 95.92 21.58 84.67 103.00 38.73 66.61 331.62 112.23 62.53 384.67 504.30 286.70 349.47 217.99 200.92 132.02 157.42 114.59 119.20 69 E9b_E10a KnownJunction 0 254.64 203.85 225.10 126.56 110.87 29.19 83.95 84.86 38.66 62.86 306.24 79.83 96.42 287.66 448.73 221.48 334.45 223.93 152.19 108.53 162.72 82.91 126.68 70 ER10a ExonRegion 0 114.94 156.70 182.48 105.63 75.23 52.23 69.19 76.21 29.63 50.33 266.79 68.11 48.82 296.94 438.31 188.88 267.56 149.49 128.88 95.51 145.71 88.92 81.40 71 E10_Da NovelBoundary 0 3.19 15.13 6.00 8.56 10.95 0.00 7.51 7.27 1.45 3.09 0.00 6.30 0.00 2.47 14.09 4.36 4.11 15.34 0.00 9.27 5.07 0.00 16.30 72 E10a_E11b KnownJunction 1 169.22 155.89 216.70 122.20 51.95 52.64 54.85 77.79 40.94 61.57 311.39 23.86 53.41 273.88 414.37 273.69 289.01 168.01 163.02 109.49 215.05 81.20 49.43 73 E10a_E12a NovelJunction 0 0.00 6.12 1.83 0.00 0.00 0.00 3.97 2.05 0.00 0.00 0.00 0.00 0.00 13.01 15.20 0.00 0.00 0.00 0.00 0.00 0.00 2.76 8.19 74 ER11a ExonRegion 0 39.51 46.77 60.86 38.62 16.05 17.12 16.33 27.08 11.12 20.26 99.87 7.22 18.76 92.57 144.10 83.22 97.93 64.06 57.34 31.91 68.31 27.09 19.58 75 ER11b ExonRegion 1 136.33 111.34 186.54 108.97 63.47 46.51 67.33 79.20 36.89 52.93 250.84 37.60 37.40 225.62 342.04 165.22 206.51 133.72 118.38 77.36 133.17 88.09 57.82 76 E11_Da KnownBoundary 0 76.16 33.94 90.06 60.86 14.43 0.00 14.40 20.87 10.88 19.39 62.23 24.46 20.78 41.14 94.81 30.85 51.33 52.65 24.85 17.77 43.99 33.56 18.69 77 E11a_E12a KnownJunction 1 96.91 70.25 66.70 59.60 46.18 39.13 41.12 27.72 21.73 8.25 80.39 0.00 19.48 86.17 75.16 69.30 57.13 48.29 83.39 11.44 54.67 27.13 16.05 78 ER11c ExonRegion 0 76.52 43.23 46.68 36.07 32.70 6.24 17.81 11.02 5.02 9.06 56.10 28.00 34.17 42.86 82.29 41.57 42.61 27.81 36.78 8.32 25.79 20.35 9.95 79 E11_Db NovelBoundary 0 12.74 28.55 3.08 4.49 0.00 0.00 8.13 6.49 4.20 5.18 4.16 6.30 6.33 4.59 22.25 3.93 0.00 4.27 0.00 0.00 8.96 2.88 0.00 80 ER12a ExonRegion 0 55.80 47.57 63.84 52.69 38.48 23.89 36.60 25.51 18.39 15.78 53.47 18.23 11.82 90.15 109.31 64.42 72.76 55.87 55.50 20.95 43.73 19.46 17.50 81 E12_Da KnownBoundary 0 55.49 61.96 65.17 39.76 38.88 18.06 31.93 15.90 16.15 19.02 60.02 26.56 12.66 92.12 102.36 71.01 52.92 45.18 63.15 24.48 29.90 17.70 12.80 82 ER12b ExonRegion 0 41.93 58.26 69.61 40.15 40.06 11.20 32.74 22.14 13.55 16.21 54.64 28.20 11.03 87.48 96.60 78.64 45.14 50.49 39.34 31.97 27.16 20.10 11.35 83 E12_Db KnownBoundary 0 36.45 76.04 62.30 36.09 60.53 5.56 30.69 24.56 10.16 7.04 32.85 19.36 20.13 78.82 123.99 59.04 39.55 39.42 24.47 24.93 19.89 27.92 18.52 84 E12b_E12b KnownJunction 0 7.04 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.21 0.00 7.20 0.00 4.53 0.00 3.25 0.00 0.00 0.00 3.07 0.00 0.00 0.00 85 ER12c ExonRegion 0 35.17 46.34 45.92 29.98 18.86 11.85 29.25 19.85 10.16 16.88 52.46 31.20 10.45 61.18 95.71 44.47 53.63 38.77 33.67 26.31 35.30 23.20 15.44 86 E12_Ab KnownBoundary 0 44.08 50.71 34.98 35.59 0.00 7.89 25.26 18.36 10.85 17.89 45.54 11.40 20.94 54.39 66.38 46.91 52.55 26.57 31.34 34.32 23.10 33.68 3.84 87 ER12d ExonRegion 0 23.41 27.41 18.56 21.34 12.94 10.42 15.20 12.50 9.28 11.33 33.02 18.83 13.45 25.39 44.98 25.04 27.79 21.70 13.58 18.98 26.24 11.87 6.85 88 E12_Dc KnownBoundary 0 35.64 28.61 24.90 16.15 14.35 4.43 36.70 4.76 6.63 8.86 30.80 19.36 13.96 21.90 33.38 22.81 29.83 17.62 11.67 20.84 23.23 8.33 4.35 89 ER12e ExonRegion 0 13.34 5.42 8.58 4.30 2.92 0.00 7.90 3.35 1.68 4.14 12.36 6.30 4.26 9.40 22.68 6.93 6.60 7.34 2.70 9.54 7.01 3.98 1.96 90 E12_Dd NovelBoundary 0 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 13.35 0.00 0.00 0.00 7.52 4.49 4.60 0.00 0.00 5.93 5.82 0.00 91 ER12f ExonRegion 0 2.12 0.00 0.61 1.36 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.81 1.45 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 92 ER13a ExonRegion 0 0.00 0.00 0.00 0.19 0.00 0.00 0.25 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.42 0.00 0.00