Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ABHD5 Gene 0 25.28 28.64 18.73 30.34 20.82 13.77 19.67 14.58 18.73 13.69 58.43 18.55 40.43 62.02 51.84 17.78 57.58 25.53 12.45 28.53 20.23 41.14 18.70 2 456453 Transcript 0 1.58 2.12 1.29 0.92 1.00 0.56 1.07 0.31 0.55 0.35 1.59 0.51 2.19 0.53 1.73 0.84 0.72 1.03 0.98 3.02 0.40 0.00 0.00 3 458276 Transcript 0 40.35 37.93 27.58 37.72 22.95 22.33 22.19 15.78 23.67 20.98 64.32 25.99 57.84 80.49 74.74 18.51 65.36 24.82 11.33 30.38 18.25 62.44 22.13 4 486764 Transcript 0 2.68 3.78 2.84 5.41 2.60 2.43 5.98 1.59 2.34 1.85 3.15 3.37 6.86 8.22 4.49 2.78 7.55 0.76 0.00 5.78 1.59 5.27 1.59 5 13894 Transcript 0 0.67 2.50 0.91 0.21 0.28 0.19 0.56 0.00 0.00 0.18 1.46 0.78 2.03 3.85 2.48 0.31 2.40 0.37 0.33 1.10 0.69 1.52 0.00 6 454293 Transcript 0 0.21 1.65 0.18 0.20 0.00 0.00 1.26 0.00 0.00 0.00 1.74 0.00 4.08 0.27 0.00 0.31 0.00 2.52 0.96 6.60 0.00 0.21 0.00 7 413300 Transcript 0 14.11 11.64 6.54 9.77 9.13 3.67 9.71 7.20 6.79 7.13 33.50 5.77 13.29 36.70 20.79 11.59 29.16 18.18 4.25 10.64 18.00 16.78 7.83 8 463153 Transcript 0 8.51 5.29 3.86 9.88 2.65 2.68 2.38 2.30 4.74 2.85 12.68 2.89 8.81 19.06 13.63 3.04 13.79 5.46 2.46 5.38 4.69 6.64 3.83 9 ER1a ExonRegion 0 6.00 3.46 0.12 0.00 1.52 1.14 2.22 0.06 1.08 0.09 0.00 2.02 8.75 1.52 5.03 3.37 1.87 0.00 0.00 4.82 1.25 0.00 0.00 10 E1_Da NovelBoundary 0 10.45 45.78 13.99 12.85 20.37 13.40 32.11 6.57 14.41 3.28 2.58 0.00 0.00 0.00 6.06 15.98 9.44 14.26 8.66 15.28 5.99 2.82 8.37 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.33 5.03 5.05 2.13 2.48 1.11 2.05 1.18 1.13 1.30 1.92 0.00 0.00 0.62 1.90 0.00 1.02 4.12 3.94 7.24 0.34 0.01 0.00 13 E2a_E5a KnownJunction 0 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 15 ER3b ExonRegion 0 1.97 4.55 1.77 0.00 5.94 7.89 5.57 0.00 3.45 0.00 5.05 0.00 0.00 5.04 5.36 1.41 7.39 1.03 0.00 6.27 4.41 12.89 3.58 16 E3_Ac KnownBoundary 0 3.33 6.45 8.34 0.00 14.77 5.34 16.74 0.00 4.66 0.00 6.53 0.00 0.00 9.30 8.90 4.10 7.48 9.45 0.00 9.14 9.45 33.80 12.21 17 ER3c ExonRegion 0 19.48 22.23 6.63 4.44 19.79 18.11 17.98 5.58 8.24 4.89 33.67 2.56 9.22 40.73 42.76 15.67 46.14 7.94 6.77 22.85 21.59 36.82 20.52 18 E3a_E5a KnownJunction 0 15.93 35.39 9.17 18.78 35.48 22.37 24.25 19.72 15.89 11.26 45.43 12.60 43.18 21.84 17.18 23.07 61.43 15.92 27.11 36.24 27.99 28.35 27.32 19 ER4a ExonRegion 0 0.43 0.14 0.37 0.41 0.00 0.00 0.27 0.00 0.00 0.00 1.17 0.00 1.33 0.54 0.00 0.62 0.00 2.47 1.93 1.63 0.00 0.42 0.00 20 E4a_E5a KnownJunction 0 0.00 3.16 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 2.32 0.00 6.82 0.00 0.00 0.00 0.00 2.57 0.00 11.57 0.00 0.00 0.00 21 ER5a ExonRegion 0 8.07 18.54 14.46 25.59 11.39 11.49 9.18 14.53 16.23 7.24 61.07 8.00 15.82 32.43 27.16 8.92 64.25 24.00 9.44 31.59 26.60 27.21 11.41 22 E5_Da KnownBoundary 0 0.00 0.00 0.00 4.59 7.89 0.00 0.00 2.55 5.15 4.35 7.26 7.65 8.28 7.18 0.00 3.85 8.42 0.00 0.00 0.00 0.00 3.00 0.00 23 E5a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E5a_E7a KnownJunction 1 16.60 14.67 28.65 41.45 15.62 9.60 16.08 10.72 32.46 5.48 99.29 13.20 19.48 53.27 60.70 11.45 105.66 38.92 8.85 67.88 42.56 80.03 20.91 25 ER5b ExonRegion 0 1.31 2.21 3.01 5.35 2.62 2.65 1.99 2.39 2.24 2.16 4.67 3.84 8.28 9.01 6.67 3.94 10.21 1.00 0.00 8.28 2.09 4.79 1.06 26 E5_Ab KnownBoundary 0 3.78 0.00 7.30 9.26 0.00 0.00 0.00 2.34 0.00 0.00 1.95 6.30 0.00 15.36 0.00 0.00 3.46 0.00 0.00 5.75 3.15 0.00 3.93 27 E5_Db KnownBoundary 0 6.37 0.00 1.30 3.53 0.00 0.00 10.91 0.00 1.79 1.29 2.68 0.00 0.00 9.95 4.45 8.29 8.88 1.95 0.00 2.62 5.31 5.45 0.00 28 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER5c ExonRegion 0 4.64 0.13 4.15 5.89 0.00 0.12 5.51 3.12 1.24 0.74 2.00 4.33 0.00 12.36 2.43 3.64 5.11 0.95 0.00 6.38 4.83 2.08 0.00 30 ER5d ExonRegion 0 4.05 5.36 2.66 5.47 2.57 2.21 9.97 0.80 2.44 1.54 1.62 2.90 5.44 7.43 2.31 1.61 4.89 0.52 0.00 3.27 1.08 5.75 2.12 31 ER6a ExonRegion 0 3.34 12.52 4.56 1.07 1.41 0.93 2.78 0.00 0.00 0.89 4.60 3.88 10.15 12.66 6.10 1.56 12.01 0.00 1.67 3.36 1.23 7.60 0.00 32 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 4.94 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 I6 Intron 0 5.76 4.03 3.62 4.53 4.64 0.45 3.61 3.19 1.82 0.42 1.44 7.31 15.50 8.37 7.52 1.47 5.72 0.46 2.37 6.32 0.55 3.61 0.73 34 I6_AR2 ActiveIntronRegion 0 6.99 5.25 2.97 5.34 5.86 0.24 3.96 3.42 2.00 0.49 1.35 6.32 20.66 7.79 8.64 1.30 4.93 0.38 3.34 6.79 0.14 3.88 1.03 35 E7_Aa NovelBoundary 0 14.45 21.44 0.00 5.96 0.00 0.00 4.20 4.11 4.20 1.67 7.63 18.16 19.97 7.65 11.50 4.36 8.13 4.52 3.86 6.39 0.00 9.12 4.35 36 ER7a ExonRegion 0 29.95 45.55 21.74 40.59 29.11 18.29 26.99 31.54 31.62 13.63 112.68 23.83 50.69 127.81 89.50 30.77 88.86 53.60 23.47 63.68 38.36 84.86 33.92 37 E7_Da KnownBoundary 1 29.26 70.25 33.77 49.64 62.56 43.21 50.43 21.56 27.31 16.87 123.77 6.30 84.25 114.90 84.18 12.22 63.39 42.08 29.93 50.05 41.45 63.50 35.51 38 ER7b ExonRegion 0 41.41 49.92 29.80 53.94 38.40 22.53 36.00 29.38 35.14 23.84 157.48 34.07 81.78 155.54 111.98 39.68 131.59 69.60 29.25 64.55 61.47 85.19 40.72 39 E7c_E8b KnownJunction 1 85.20 47.75 31.46 59.00 23.51 15.33 59.88 39.60 44.91 32.77 179.99 37.06 39.12 201.54 124.85 34.69 148.95 88.54 26.07 63.53 99.59 94.30 46.44 40 ER7c ExonRegion 0 77.61 50.16 35.94 55.88 31.22 23.84 58.70 39.75 41.17 40.14 188.78 34.64 59.41 197.60 116.05 53.50 161.74 90.54 23.36 68.08 104.31 88.20 39.16 41 ER8a ExonRegion 0 28.22 17.62 13.07 19.53 10.70 7.34 19.42 14.40 13.59 13.00 67.01 11.55 26.58 70.92 41.58 18.82 58.32 30.18 8.49 21.28 35.99 30.56 15.66 42 ER8b ExonRegion 0 62.16 60.69 34.33 57.66 44.15 28.73 38.82 41.15 33.14 35.78 154.82 42.14 86.52 181.05 133.23 52.17 173.64 87.86 35.00 68.08 79.00 89.63 57.32 43 E8a_E9a KnownJunction 1 66.97 39.47 34.59 40.39 23.68 15.90 36.39 35.69 44.94 39.86 139.35 0.00 123.04 162.58 130.91 69.47 174.57 68.69 32.38 72.99 61.90 98.34 50.79 44 ER8c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 1.85 0.00 2.13 2.20 0.00 0.00 45 ER9a ExonRegion 0 57.77 56.54 37.08 49.87 41.16 37.97 40.90 30.17 46.44 38.06 162.83 35.68 123.78 195.29 127.53 59.47 182.29 69.41 28.58 63.77 55.62 82.22 52.96 46 E9a_E10b KnownJunction 0 69.79 47.62 47.78 51.21 24.62 42.65 26.81 22.10 35.47 34.65 131.77 37.51 99.83 183.88 165.40 33.67 143.81 60.19 21.55 49.86 47.26 109.91 44.56 47 E9a_E10c KnownJunction 0 0.00 5.66 0.00 0.00 7.56 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 2.47 0.00 4.36 0.00 6.18 0.00 0.00 0.00 3.00 0.00 48 E9a_E11a NovelJunction 0 3.63 12.96 5.97 30.07 4.33 0.00 11.75 9.04 1.62 1.32 11.37 0.00 6.82 12.13 21.14 12.05 0.00 11.77 8.38 11.06 0.00 6.06 6.49 49 ER10a ExonRegion 0 16.93 10.68 10.42 13.29 6.69 6.88 6.29 6.91 9.57 7.45 35.28 8.66 24.62 52.38 35.54 8.17 33.01 14.78 6.37 12.77 12.67 19.27 11.01 50 ER10b ExonRegion 0 72.67 52.38 45.12 61.20 47.32 25.75 42.02 31.57 49.14 30.81 151.17 25.29 73.26 161.47 143.14 33.88 163.86 73.29 27.90 54.83 59.73 83.21 59.44 51 E10_Ac KnownBoundary 0 64.97 40.06 55.53 65.33 39.73 12.78 38.55 33.56 48.55 22.62 141.98 60.92 77.43 180.12 96.55 20.85 137.63 62.30 34.17 50.56 44.54 88.67 27.66 52 ER10c ExonRegion 0 56.10 49.34 37.30 58.83 36.49 40.59 41.70 28.51 41.60 26.86 119.75 48.20 140.75 186.99 153.51 45.43 125.54 76.59 31.43 51.30 47.08 86.71 47.05 53 E10a_E11a KnownJunction 1 72.98 28.22 37.93 74.95 77.84 36.17 50.92 38.40 40.86 25.41 108.82 84.48 156.32 246.63 195.44 29.74 119.40 55.01 34.54 65.58 53.25 126.32 75.80 54 E11_Aa NovelBoundary 0 11.04 0.00 2.90 6.19 0.00 2.78 1.85 4.56 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 4.77 10.90 0.00 5.69 0.00 0.00 0.00 55 ER11a ExonRegion 0 48.95 53.61 70.87 100.40 59.45 37.69 46.92 34.35 47.27 32.85 157.20 56.03 87.26 145.77 173.98 45.13 160.69 63.10 42.99 57.68 44.07 102.25 45.41 56 E11_Da KnownBoundary 0 42.45 96.04 63.66 95.93 42.61 35.09 50.52 26.37 37.24 48.35 141.67 73.37 103.73 83.88 142.53 27.26 117.53 40.38 12.52 47.68 32.49 56.46 19.21 57 E11a_E12a KnownJunction 0 3.33 3.16 0.00 5.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 58 ER11b ExonRegion 0 63.26 60.01 56.48 80.59 43.35 18.83 36.54 35.57 41.91 33.62 150.25 60.23 96.51 101.99 105.48 28.93 139.52 47.26 18.83 56.12 22.14 87.97 30.54 59 E11_Db KnownBoundary 0 121.65 83.74 42.46 74.42 87.78 18.80 55.12 44.52 39.47 24.98 169.52 73.07 214.11 146.86 127.82 47.25 217.02 43.94 31.34 75.29 24.28 129.57 56.94 60 ER11c ExonRegion 0 51.27 66.16 34.95 61.96 43.08 24.33 39.76 25.23 34.29 28.29 61.18 40.45 73.70 56.88 58.82 21.88 52.27 14.27 12.43 39.89 7.49 77.40 21.84 61 E11_Dc NovelBoundary 1 38.90 79.85 49.32 90.70 103.40 59.23 58.52 24.03 31.94 31.86 68.07 56.72 112.49 46.27 56.00 7.78 47.87 9.82 4.80 71.46 10.44 40.60 11.01 62 I11 Intron 0 11.42 17.23 6.89 26.33 17.35 9.43 13.18 12.07 12.88 6.40 9.89 7.96 11.04 7.34 8.43 2.85 11.67 7.39 3.75 13.03 2.29 8.82 4.60 63 I11_AR1 ActiveIntronRegion 0 32.18 45.19 19.17 56.50 39.98 16.38 31.43 24.38 25.11 17.42 30.23 23.22 28.88 20.48 23.15 7.92 29.02 11.85 7.50 28.88 6.51 26.73 10.44 64 I11_AR2 ActiveIntronRegion 0 4.94 4.24 0.82 25.10 1.11 3.21 1.43 7.78 6.18 0.00 9.66 0.00 3.52 0.68 7.49 2.97 0.00 0.00 0.00 3.90 0.00 2.08 0.00 65 I11_AR3 ActiveIntronRegion 0 8.04 5.59 0.68 16.75 3.41 0.52 1.39 5.92 3.39 0.73 3.43 0.00 6.49 1.06 0.94 1.02 2.78 0.00 0.00 0.90 0.00 0.92 0.00 66 ER12a ExonRegion 0 5.27 2.04 1.16 10.56 1.27 1.16 0.84 0.00 4.66 1.08 2.76 0.00 1.82 2.32 5.36 0.94 4.61 1.60 1.01 3.37 1.40 0.66 0.47