Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UQCRC1 Gene 0 103.21 134.32 296.42 146.47 83.62 139.05 113.70 169.32 78.12 105.67 567.48 73.97 45.66 438.26 498.82 295.01 283.32 320.34 199.46 257.10 227.23 223.36 212.44 2 493806 Transcript 0 0.34 1.98 4.24 5.25 0.43 0.00 0.00 0.00 0.00 0.00 0.31 0.58 0.00 0.00 0.00 0.00 0.00 2.38 1.55 3.80 0.00 0.00 2.71 3 203407 Transcript 0 0.00 0.00 1.00 0.29 0.00 0.00 0.00 0.00 0.00 0.31 1.05 0.00 0.00 0.00 0.00 0.00 0.00 3.64 1.06 2.00 0.00 0.00 1.78 4 412343 Transcript 0 0.00 0.00 4.90 1.36 0.00 0.00 1.32 0.00 1.24 0.00 0.00 0.00 0.00 3.25 11.61 2.97 3.30 0.00 0.00 4.26 4.41 2.08 2.94 5 467690 Transcript 0 2.51 1.77 5.46 5.61 5.72 3.74 3.53 1.32 2.00 3.20 1.53 0.79 0.84 1.81 3.46 1.34 3.16 2.93 5.90 5.54 0.48 0.92 1.75 6 463708 Transcript 0 0.58 1.08 3.63 1.24 1.42 2.02 1.35 0.91 0.68 1.04 3.74 0.75 0.55 2.31 2.41 2.68 2.81 4.26 10.69 1.82 1.42 1.05 4.12 7 415995 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 472438 Transcript 0 15.72 31.08 84.38 36.60 42.43 93.26 46.53 39.51 22.23 29.33 168.44 21.65 9.38 122.97 113.56 62.41 90.54 80.25 35.95 68.08 78.39 50.60 44.47 9 460105 Transcript 0 84.66 132.18 387.83 211.25 73.58 175.13 114.52 254.95 123.51 147.95 846.61 179.67 89.11 599.30 632.47 430.96 434.07 512.75 296.24 372.34 298.60 292.73 342.12 10 471189 Transcript 0 9.20 6.18 27.23 14.96 10.08 8.12 8.03 14.83 5.49 2.67 18.67 2.67 2.12 34.93 40.94 13.00 8.17 22.17 13.24 16.69 8.81 4.65 3.55 11 480561 Transcript 1 23.49 17.63 63.05 62.23 15.86 29.76 13.46 29.55 17.35 14.27 39.47 1.41 4.63 31.39 38.90 31.17 21.66 47.59 38.40 33.01 11.47 19.17 14.37 12 ER1a ExonRegion 0 0.69 3.96 6.24 10.50 0.87 0.00 0.00 0.00 0.00 0.01 0.63 1.16 0.00 0.00 0.00 0.00 0.00 4.77 3.10 7.60 0.00 0.00 1.66 13 E1a_E2b KnownJunction 0 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 14 ER2a ExonRegion 0 0.00 0.00 1.00 0.29 0.00 0.00 0.00 0.00 0.00 0.31 1.05 0.00 0.00 0.00 0.00 0.00 0.00 3.64 1.06 2.00 0.00 0.00 1.78 15 E2_Ab KnownBoundary 0 0.00 0.00 8.40 3.56 0.00 0.00 0.00 0.00 0.00 1.02 2.21 0.00 0.00 0.00 0.00 0.00 0.00 6.80 3.86 6.39 0.00 0.00 4.10 16 ER2b ExonRegion 0 1.53 1.97 2.80 2.59 0.67 3.33 2.16 0.08 0.28 0.82 4.23 0.00 0.00 1.90 2.92 2.01 1.65 5.74 2.21 4.90 1.31 1.25 3.15 17 E2_Ac KnownBoundary 0 2.89 0.00 0.00 1.86 0.00 2.67 2.08 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 3.50 0.00 2.03 0.00 0.00 0.00 0.00 0.00 18 E2_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2_Af KnownBoundary 0 41.12 101.36 10.56 5.09 41.34 126.80 93.76 10.19 9.43 2.36 149.25 5.55 6.01 158.52 121.52 121.76 115.75 64.29 25.04 59.57 57.02 33.43 80.67 21 ER2c ExonRegion 1 40.21 75.24 26.96 6.81 29.43 108.19 79.44 6.91 8.65 13.76 135.30 0.00 0.00 121.81 156.67 95.11 89.12 90.54 31.85 53.19 57.30 37.50 70.48 22 ER2d ExonRegion 1 76.72 129.13 33.39 16.01 56.86 201.26 120.48 12.10 16.06 17.78 201.02 0.00 0.00 209.11 217.59 146.38 123.78 142.74 45.39 102.13 96.96 46.36 149.77 23 ER2e ExonRegion 1 133.34 192.78 44.60 26.44 87.23 311.75 174.76 22.82 26.18 22.94 315.84 0.00 6.57 360.55 328.42 261.55 195.41 228.38 73.90 182.55 142.36 90.84 277.22 24 E2_Da KnownBoundary 1 394.59 474.52 155.64 90.63 193.63 765.53 431.38 137.15 69.27 75.99 630.74 10.50 14.28 902.00 783.36 744.85 445.07 661.02 452.34 430.74 267.00 477.19 889.74 25 ER2f ExonRegion 1 218.78 302.19 92.76 49.43 130.13 511.20 281.92 60.84 40.64 38.42 502.94 2.74 10.01 765.23 679.57 502.39 339.22 352.37 234.87 299.86 221.11 302.67 550.72 26 ER2g ExonRegion 1 155.47 211.58 161.33 64.77 91.58 326.75 195.65 86.30 43.85 51.87 334.39 2.95 6.82 400.71 347.95 390.43 260.02 388.83 240.35 235.06 159.32 209.77 418.07 27 E2_Db KnownBoundary 0 2.96 0.00 3.16 3.63 0.00 2.21 1.99 2.34 1.79 1.67 0.00 0.00 0.00 0.00 0.00 3.16 0.00 2.49 0.00 0.00 2.72 0.00 0.00 28 E2b_E3a KnownJunction 0 77.94 88.73 179.24 55.20 34.72 58.03 65.23 69.25 23.76 40.08 101.08 10.95 0.00 107.60 132.39 82.46 48.71 209.13 79.72 90.25 71.29 44.33 80.33 29 E2_Dc KnownBoundary 0 3.48 5.79 4.14 1.83 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 4.15 4.80 3.07 0.00 0.00 0.00 30 E2c_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER2h ExonRegion 0 8.47 5.69 6.86 4.09 0.00 6.23 2.65 4.49 3.71 2.06 1.93 0.00 0.00 0.65 1.16 10.11 3.96 9.24 5.73 3.83 3.53 0.00 3.52 32 ER2i ExonRegion 0 3.17 5.37 6.03 3.11 0.00 0.11 0.82 0.10 2.12 1.47 0.15 0.00 0.00 0.00 0.00 2.08 0.00 6.32 1.91 1.45 0.35 0.00 0.00 33 E2d_E3a KnownJunction 0 9.78 5.99 8.66 1.33 0.00 0.00 0.00 0.00 1.22 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.26 0.00 0.00 0.00 0.00 0.00 34 ER3a ExonRegion 1 46.61 68.77 219.24 78.15 26.36 40.45 32.60 101.99 53.44 82.59 518.02 21.34 24.38 408.97 369.65 204.19 302.39 254.11 135.98 256.01 242.52 170.60 188.09 35 E3a_E4a KnownJunction 1 45.93 123.27 459.86 208.43 63.41 103.46 89.56 254.54 104.25 158.16 658.17 50.27 75.00 1347.64 1196.74 904.12 322.21 870.69 635.31 582.92 330.26 637.69 952.57 36 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 18.82 0.00 0.00 0.00 4.35 37 ER4a ExonRegion 0 79.84 159.18 502.66 213.91 162.82 269.32 135.94 247.49 114.87 176.95 843.72 112.91 82.37 788.46 732.52 598.97 441.56 668.10 379.06 438.00 371.19 361.77 632.59 38 E4a_E5b KnownJunction 0 128.10 214.90 616.95 271.86 363.24 703.63 339.43 286.61 159.43 221.93 1114.07 134.74 61.68 861.21 753.32 383.32 580.18 518.33 221.94 513.32 495.58 326.62 330.36 39 ER5a ExonRegion 0 15.72 31.08 84.38 36.60 42.43 93.26 46.53 39.51 22.23 29.33 168.44 21.65 9.38 122.97 113.56 62.41 90.54 80.25 35.95 68.08 78.39 50.60 44.47 40 ER5b ExonRegion 0 151.57 383.12 648.24 270.75 192.22 482.25 342.10 322.56 165.93 239.69 1315.99 187.64 121.25 884.65 786.96 533.49 705.29 623.39 327.18 591.54 563.33 439.46 337.94 41 E5_Da KnownBoundary 0 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 4.45 11.02 0.00 1.91 0.00 0.00 0.00 0.00 0.00 42 E5a_E5c KnownJunction 0 367.10 438.87 790.27 401.68 275.89 355.76 328.66 409.06 213.25 277.70 1392.83 325.76 207.78 966.28 1025.90 628.55 731.56 735.76 345.05 682.25 548.21 444.86 403.68 43 ER5c ExonRegion 0 1.16 2.16 7.26 2.47 2.83 1.83 2.70 1.81 1.36 2.07 7.49 1.50 1.11 4.62 4.81 5.36 5.63 6.07 2.55 3.65 2.83 2.10 3.88 44 E5_Ac KnownBoundary 0 0.00 0.00 6.86 1.37 0.00 0.00 1.94 0.00 0.00 0.00 2.32 0.00 0.00 2.35 0.00 4.36 0.00 6.92 3.95 3.26 0.00 0.00 4.35 45 ER5d ExonRegion 0 253.72 257.67 835.86 401.36 177.19 287.58 248.57 463.77 219.99 286.90 1808.81 300.82 160.72 1256.49 1154.49 866.20 902.70 1002.68 607.53 728.82 685.76 606.61 597.19 46 E5_Db KnownBoundary 0 300.05 238.05 832.79 408.04 180.82 315.84 310.07 477.36 205.09 274.50 1478.27 299.05 143.50 1148.45 1049.51 763.82 798.88 879.60 516.63 733.83 607.58 464.58 524.98 47 E5_Dc KnownBoundary 0 3.78 0.00 3.19 3.40 3.40 2.90 0.00 2.38 0.00 1.67 4.42 0.00 0.00 2.30 5.81 0.00 4.77 0.00 4.80 0.00 0.00 0.00 3.84 48 E5c_E6b KnownJunction 0 221.97 331.45 941.27 495.51 152.21 303.35 240.07 576.43 285.93 334.57 1683.74 402.88 168.33 1161.52 1422.46 869.34 890.79 1141.38 586.28 810.53 626.48 629.91 720.46 49 ER5e ExonRegion 0 192.53 215.49 807.03 410.46 126.47 276.48 234.61 484.31 233.93 296.93 1564.17 326.73 121.78 1129.30 1118.82 762.55 828.19 1015.83 484.07 707.37 608.15 504.42 565.99 50 ER5f ExonRegion 0 2.51 1.77 5.46 5.61 5.72 3.74 3.53 1.32 2.00 3.20 1.53 0.79 0.84 1.81 3.46 1.34 3.16 2.93 5.90 5.54 0.48 0.92 1.75 51 ER6a ExonRegion 0 84.66 132.18 387.83 211.25 73.58 175.13 114.52 254.95 123.51 147.95 846.61 179.67 89.11 599.30 632.47 430.96 434.07 512.75 296.24 372.34 298.60 292.73 342.12 52 ER6b ExonRegion 0 193.57 305.89 753.32 395.84 250.20 433.54 319.21 461.30 222.21 297.30 1733.57 319.61 183.56 1219.53 1279.78 875.99 841.19 1042.39 608.08 705.71 647.14 607.94 652.49 53 E6a_E7a KnownJunction 0 372.51 412.76 743.71 390.23 436.67 586.42 468.74 399.73 194.07 271.55 1550.66 254.18 174.99 1179.00 1322.71 917.88 809.07 1148.01 871.74 726.48 687.46 705.78 796.10 54 E6b_E7a NovelJunction 0 3.63 3.22 12.12 1.96 0.00 5.51 6.36 7.06 3.30 6.58 17.74 0.00 0.00 0.00 12.11 12.39 4.58 13.64 4.52 3.13 9.08 3.00 4.10 55 ER6c ExonRegion 0 0.00 0.00 4.90 1.36 0.00 0.00 1.32 0.00 1.24 0.00 0.00 0.00 0.00 3.25 11.61 2.97 3.30 0.00 0.00 4.26 4.41 2.08 2.94 56 ER7a ExonRegion 0 215.20 326.84 626.42 302.09 301.05 452.14 372.13 366.71 186.93 240.48 1505.59 229.46 122.27 1239.54 1295.44 867.58 772.03 1101.77 713.52 663.73 642.36 664.50 680.35 57 E7_Ab KnownBoundary 0 160.99 310.80 423.20 193.12 192.95 387.05 328.26 261.40 143.05 151.90 1094.38 167.00 74.67 972.40 894.37 554.73 612.06 626.73 450.08 584.71 429.54 459.43 470.69 58 E7_Da KnownBoundary 0 219.00 261.66 470.59 224.38 267.74 296.82 317.71 290.31 136.69 177.32 1186.20 117.64 97.56 914.71 1088.33 568.57 546.61 706.70 358.98 471.58 440.35 437.82 487.17 59 ER7b ExonRegion 0 171.33 314.56 579.60 274.08 243.63 390.31 356.70 382.35 192.61 234.51 1426.89 150.85 86.15 1163.55 1144.93 688.59 709.69 947.02 484.01 631.13 556.38 540.18 557.34 60 ER7c ExonRegion 0 177.16 317.35 612.12 318.36 172.14 310.59 295.98 410.48 197.00 272.75 1418.96 111.12 109.00 1035.26 1147.12 627.61 632.00 769.21 411.62 647.12 519.50 433.64 499.01 61 E7b_E8a KnownJunction 0 233.00 279.56 632.09 376.01 134.13 302.21 333.03 425.77 200.84 299.13 1158.45 93.18 74.18 834.90 1120.59 528.41 611.41 587.64 377.61 630.67 439.48 428.27 404.45 62 ER8a ExonRegion 0 214.68 273.09 608.03 283.75 156.42 246.52 280.95 350.24 174.40 247.12 1189.42 103.67 78.75 1048.13 1225.74 576.32 604.73 559.09 378.06 584.68 504.04 470.20 406.79 63 E8_Da KnownBoundary 0 27.78 11.91 66.73 30.87 16.38 2.90 7.77 36.80 9.06 2.98 34.17 6.00 13.31 54.51 41.04 4.36 34.69 34.07 7.34 20.26 14.33 7.29 6.57 64 E8a_E8c KnownJunction 0 177.44 260.35 571.03 268.83 104.58 161.90 181.11 286.20 149.25 190.37 662.85 62.57 26.13 812.59 950.25 370.50 391.96 436.79 210.17 449.15 240.56 367.83 318.66 65 ER8b ExonRegion 0 16.28 12.35 53.23 28.55 14.82 16.24 13.41 29.67 10.98 5.34 31.53 5.33 4.24 63.36 70.28 23.02 16.33 44.33 26.48 29.12 13.22 9.30 7.10 66 E8_Ab KnownBoundary 0 18.00 5.20 29.86 13.78 3.90 7.33 9.14 10.97 4.54 2.61 16.95 0.00 0.00 10.18 20.89 10.60 4.68 21.60 0.00 5.56 5.93 5.88 0.00 67 E8_Ac KnownBoundary 0 10.08 6.31 24.07 6.19 7.05 10.73 2.21 26.94 4.31 2.26 9.16 0.00 0.00 2.30 0.00 6.92 4.58 16.21 8.66 6.14 6.18 2.63 3.93 68 ER8c ExonRegion 0 177.79 246.06 510.98 245.32 112.38 192.55 186.68 273.10 148.21 203.00 780.89 60.61 37.52 857.54 1076.36 430.96 462.13 522.91 232.53 465.96 264.45 368.78 299.54 69 ER8d ExonRegion 0 442.42 425.79 712.22 346.45 262.06 339.94 329.29 431.53 203.18 251.52 1413.60 155.91 82.57 1157.63 1409.46 727.93 642.58 776.40 420.57 633.50 538.17 504.33 474.98 70 E8b_E9a KnownJunction 0 301.68 499.52 879.39 458.88 228.69 338.50 296.42 445.24 178.09 256.93 1552.92 184.56 120.61 1134.86 1643.12 897.37 636.37 812.44 504.96 751.47 508.18 543.45 489.47 71 E8b_E10a NovelJunction 0 0.00 2.63 3.25 0.00 0.00 0.00 1.85 13.47 2.98 2.85 2.68 6.30 0.00 4.77 18.54 3.76 16.83 7.17 8.47 0.00 0.00 5.63 0.00 72 I8_AR1 ActiveIntronRegion 0 20.81 0.00 3.68 4.09 5.35 5.50 12.14 1.73 3.71 3.44 19.33 0.72 4.69 8.12 9.19 16.35 3.30 16.63 20.17 10.64 10.65 0.00 7.83 73 ER9a ExonRegion 0 198.90 330.27 839.74 434.25 232.32 356.91 287.88 525.87 198.06 272.63 1478.26 196.64 149.15 1111.26 1513.27 798.29 610.63 864.34 527.81 672.16 541.29 586.92 476.93 74 E9a_E10a KnownJunction 0 246.12 352.50 951.06 520.18 346.86 434.52 363.86 568.88 239.20 330.67 1635.57 283.14 243.49 1201.61 1794.18 686.49 792.05 798.43 574.42 831.75 670.41 731.68 509.53 75 ER10a ExonRegion 0 162.54 263.53 786.69 409.67 233.18 297.83 274.96 491.69 179.38 288.48 1392.54 192.28 134.77 966.35 1452.16 607.80 706.88 687.58 414.75 640.80 572.58 611.94 422.79 76 E10_Da KnownBoundary 0 150.62 243.77 793.02 407.11 220.46 256.39 276.28 512.73 171.06 264.54 1082.01 188.76 64.44 727.06 1328.02 617.96 645.53 695.38 338.27 552.37 456.04 509.83 431.43 77 ER10b ExonRegion 0 95.90 256.45 653.39 337.08 148.24 180.75 176.62 414.29 132.65 238.06 859.96 203.41 106.76 830.31 1363.91 633.12 411.89 508.00 377.26 446.77 359.65 515.50 341.24 78 E10b_E11a KnownJunction 0 130.47 287.32 745.86 444.00 132.09 146.96 180.18 477.24 158.88 261.77 1006.47 224.62 66.39 978.28 1644.36 726.90 428.80 661.18 583.83 527.19 394.76 740.56 438.08 79 ER11a ExonRegion 0 221.20 342.68 724.60 383.62 156.60 173.00 189.95 448.24 178.56 231.18 1282.35 108.69 55.48 784.24 1280.18 651.68 611.32 650.41 479.90 465.62 488.03 556.41 454.99 80 E11_Da KnownBoundary 0 23.56 21.25 75.40 86.87 27.25 36.97 18.11 48.67 19.10 12.60 40.75 7.65 0.00 25.84 24.72 24.10 30.01 79.51 13.74 45.32 21.99 14.02 21.94 81 E11a_E11b KnownJunction 1 284.72 280.34 634.81 294.14 85.91 141.62 124.54 376.65 125.72 227.39 791.31 121.39 28.41 642.12 920.45 439.54 472.18 363.38 407.64 366.12 343.98 571.49 411.96 82 ER11b ExonRegion 0 23.49 17.63 63.05 62.23 15.86 29.76 13.46 29.55 17.35 14.27 39.47 1.41 4.63 31.39 38.90 31.17 21.66 47.59 38.40 33.01 11.47 19.17 14.37 83 E11_Ab KnownBoundary 0 24.60 5.92 36.90 36.69 4.33 9.77 10.69 29.00 8.68 13.03 27.59 0.00 6.66 11.95 24.48 23.58 7.57 25.25 18.07 21.16 8.40 15.25 16.39 84 ER11c ExonRegion 0 252.34 218.32 382.51 161.45 87.04 118.90 81.65 219.35 94.31 139.83 581.51 76.14 50.43 411.16 632.70 359.95 302.01 208.18 280.70 226.87 258.34 421.38 211.89 85 E11_Db KnownBoundary 1 204.26 117.48 359.98 162.72 110.10 78.88 64.21 107.82 52.86 68.87 214.53 73.82 39.77 177.82 328.57 211.40 158.58 102.10 186.55 81.94 115.03 125.77 207.35 86 E11_Dc KnownBoundary 1 148.69 86.37 82.29 35.39 90.41 113.51 112.13 54.09 20.60 29.92 121.24 24.91 6.82 147.39 465.05 75.88 114.73 14.05 46.02 119.84 95.08 103.48 113.62 87 ER11d ExonRegion 1 139.80 84.29 257.45 103.65 81.08 75.37 69.91 82.79 37.30 51.04 174.64 62.34 25.09 219.50 449.98 154.40 134.84 54.51 129.49 105.32 108.86 109.91 172.67 88 ER11e ExonRegion 0 62.27 37.92 126.57 61.24 36.42 35.97 40.44 46.00 17.65 26.23 67.46 21.37 3.18 110.39 242.30 61.84 50.37 14.13 42.75 59.44 51.96 45.17 73.70 89 ER11f ExonRegion 0 2.12 0.00 1.23 1.36 5.35 0.00 2.65 0.00 0.00 0.00 5.80 0.00 0.00 6.50 11.61 2.97 0.00 0.00 0.00 4.26 4.41 0.00 0.00 90 IG28_AR1 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.87 1.23 0.94 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 20.01 112.06