Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SS18L2 Gene 0 187.93 123.09 117.68 67.20 92.63 38.47 71.00 88.45 36.44 47.37 230.43 163.48 74.15 153.18 285.18 149.14 156.44 30.19 53.57 53.21 36.28 79.47 35.68 2 447630 Transcript 0 0.94 0.04 0.55 0.09 1.57 0.00 0.91 0.20 0.68 0.01 0.30 0.00 0.49 0.20 1.27 1.55 0.21 0.17 0.14 0.70 0.31 1.09 0.35 3 11691 Transcript 0 0.53 2.03 0.92 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.48 0.00 0.00 0.00 0.73 2.97 2.48 0.92 0.00 0.00 0.00 1.56 0.00 4 474941 Transcript 0 12.52 3.52 4.74 2.81 3.68 2.90 6.09 0.87 0.54 1.59 3.58 7.06 8.21 15.18 11.06 11.12 8.65 1.88 6.17 5.83 1.59 1.04 6.14 5 ER1a ExonRegion 0 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.02 0.00 0.00 0.00 0.10 0.05 0.00 0.05 0.00 0.00 0.94 0.00 0.00 6 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 Ix Intron 0 9.65 10.71 12.67 4.04 15.64 11.66 22.96 15.22 6.50 10.32 6.21 8.02 10.60 24.64 10.56 33.61 15.48 21.13 20.66 22.69 5.95 2.01 6.41 8 Ix_SR1 SilentIntronRegion 0 9.68 10.74 12.70 4.05 15.68 11.69 23.02 15.26 6.52 10.35 6.22 8.04 10.62 24.70 10.59 33.69 15.52 21.18 20.72 22.75 5.96 2.01 6.43 9 Ix Intron 0 11.45 23.01 23.90 9.14 18.02 11.79 22.49 24.46 7.52 13.97 7.75 8.29 7.11 31.74 21.51 38.91 16.61 20.09 20.25 25.44 6.25 3.00 4.44 10 Ix_AR1 ActiveIntronRegion 0 8.00 12.05 4.23 6.47 26.32 12.24 29.92 19.89 6.49 10.36 2.25 9.29 9.47 17.16 14.14 13.73 8.70 13.71 2.90 17.95 0.80 1.93 2.08 11 Ix_AR2 ActiveIntronRegion 0 7.84 16.45 22.03 12.67 18.72 15.93 29.59 29.27 8.61 14.82 8.95 13.35 11.17 30.56 17.89 40.83 13.13 18.81 19.67 21.74 4.27 2.67 5.21 12 Ix_SR2 SilentIntronRegion 0 13.22 24.57 27.12 7.70 19.30 10.78 20.09 20.77 7.34 15.17 8.02 7.02 6.15 35.48 20.61 45.04 20.73 20.73 25.65 29.59 7.11 4.03 3.05 13 Ix_AR3 ActiveIntronRegion 0 14.56 32.01 26.45 7.70 15.01 8.63 17.06 25.51 7.07 12.66 7.26 4.15 3.50 32.13 28.60 34.41 17.55 23.03 17.10 26.96 8.72 2.39 5.72 14 E2_Aa NovelBoundary 0 20.15 3.35 10.14 2.06 0.00 7.44 6.23 11.42 6.34 1.50 2.37 5.85 0.00 4.24 13.35 8.12 4.77 15.25 3.86 11.89 6.12 0.00 0.00 15 ER2a ExonRegion 0 0.53 2.03 0.92 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.48 0.00 0.00 0.00 0.73 2.97 2.48 0.92 0.00 0.00 0.00 1.56 0.00 16 ER2b ExonRegion 1 301.14 149.12 99.58 39.84 85.03 55.05 99.56 52.91 27.75 28.44 214.87 8.02 9.92 145.04 289.68 180.26 184.68 46.08 56.48 52.77 66.70 51.13 55.37 17 E2a_E3b KnownJunction 1 295.46 120.18 138.79 38.76 87.95 53.89 135.05 98.87 48.70 52.19 272.07 30.61 12.50 251.58 357.25 195.85 267.88 76.52 63.15 50.75 54.18 63.32 48.23 18 ER3a ExonRegion 0 12.52 3.52 4.74 2.81 3.68 2.90 6.09 0.87 0.54 1.59 3.58 7.06 8.21 15.18 11.06 11.12 8.65 1.88 6.17 5.83 1.59 1.04 6.14 19 E3_Ab KnownBoundary 0 0.00 9.27 4.35 2.06 3.65 2.16 12.19 0.00 0.00 3.33 2.68 6.15 0.00 15.07 8.90 3.59 7.76 4.97 3.86 6.46 0.00 0.00 0.00 20 ER3b ExonRegion 1 157.71 109.89 152.61 52.85 102.45 63.46 83.51 88.70 46.17 54.31 330.35 52.35 44.37 187.86 233.55 121.58 288.61 59.35 50.46 69.04 117.17 33.20 21.79 21 E3a_E4a KnownJunction 1 126.76 122.54 281.92 125.13 165.20 55.31 98.09 137.56 81.10 92.38 726.03 74.27 34.25 234.51 305.71 115.53 544.18 82.41 102.78 121.19 227.28 57.68 21.85 22 ER4a ExonRegion 0 285.35 251.26 273.83 156.78 216.06 90.57 164.82 197.43 79.03 109.43 526.44 258.10 134.26 342.32 631.25 373.21 329.85 88.98 114.03 111.25 63.16 178.31 85.70 23 E4_Da KnownBoundary 0 637.89 412.03 347.24 213.36 139.13 55.82 128.96 305.88 122.60 154.64 508.81 484.06 207.94 287.78 691.14 256.17 277.89 20.19 65.88 124.32 42.69 200.11 39.86 24 ER4b ExonRegion 0 335.93 199.44 174.66 115.21 136.86 42.02 86.25 155.46 59.99 78.34 337.62 426.00 169.26 226.41 454.70 189.18 211.55 16.96 83.24 81.05 36.12 146.67 41.19 25 E4_Db KnownBoundary 0 0.00 2.43 5.50 1.70 0.00 0.00 2.03 2.55 4.11 0.00 0.00 0.00 0.00 0.00 8.90 4.36 7.85 2.11 4.05 2.81 0.00 3.12 3.41 26 ER4c ExonRegion 0 2.79 0.11 1.66 0.27 4.71 0.00 2.74 0.55 2.04 0.03 0.88 0.00 1.46 0.59 3.73 4.59 0.63 0.46 0.41 2.11 0.00 3.27 1.06