Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC093415.4 Gene 0 7.58 10.29 10.71 13.30 6.65 7.08 9.38 8.91 9.93 6.07 1.52 2.53 3.65 2.24 4.72 2.86 4.80 14.58 11.02 10.84 10.19 4.43 14.04 2 457661 Transcript 0 0.00 0.87 0.00 0.00 1.15 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 1.26 3 420870 Transcript 0 1.56 0.00 0.00 2.06 0.00 1.45 0.93 2.40 1.81 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 0.00 1.58 1.35 0.00 4 366441 Transcript 0 30.37 28.88 30.43 38.56 22.91 21.44 29.40 37.23 41.35 37.06 10.82 14.78 19.80 12.57 24.51 20.23 22.15 49.72 25.32 34.51 24.04 15.96 42.16 5 450990 Transcript 0 2.74 6.73 2.62 5.24 6.90 1.04 5.84 9.56 7.62 1.94 0.43 0.00 0.00 0.30 0.00 0.66 3.43 10.96 4.19 3.07 3.01 3.44 3.50 6 438136 Transcript 0 0.89 0.28 0.38 0.43 0.75 0.00 1.11 0.18 2.16 0.00 0.14 0.00 0.00 0.17 0.00 0.21 1.39 0.00 1.56 1.91 0.93 0.58 1.03 7 445429 Transcript 0 10.22 5.99 14.04 13.22 4.24 2.33 12.10 8.17 5.01 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.42 0.00 2.81 14.27 5.57 0.00 8 430620 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 429532 Transcript 0 3.33 6.25 7.01 1.73 8.06 4.66 0.00 7.43 9.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.39 16.09 0.00 2.90 3.12 3.76 10 439246 Transcript 0 7.21 8.64 5.10 7.75 5.35 6.13 9.23 2.92 3.27 3.31 1.35 5.96 8.90 4.06 13.55 3.96 6.39 9.41 8.77 12.04 6.76 3.06 10.38 11 ER1a ExonRegion 0 0.00 0.87 0.00 0.00 1.15 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 1.26 12 E1_Ad KnownBoundary 0 7.33 13.22 0.00 0.00 12.65 2.90 6.71 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 22.59 0.00 3.15 12.49 21.08 13 ER1b ExonRegion 0 3.53 5.87 2.31 1.06 4.76 1.43 3.97 0.00 3.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.34 7.43 0.00 2.20 6.25 10.44 14 E1_Ae KnownBoundary 0 6.67 18.68 9.02 2.06 4.33 7.44 2.25 1.93 13.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.29 16.66 3.20 2.97 8.94 23.73 15 ER1c ExonRegion 0 4.86 11.12 3.96 1.36 7.08 2.80 4.98 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.22 13.30 1.25 3.63 11.52 20.90 16 ER1d ExonRegion 0 6.98 16.27 7.35 1.36 8.03 6.60 5.30 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.09 22.30 2.13 4.41 14.58 34.07 17 ER1e ExonRegion 0 8.47 17.69 7.96 2.18 8.03 13.57 5.03 0.86 4.94 0.80 0.00 0.00 0.00 0.65 0.00 0.00 0.00 13.12 23.57 2.13 4.41 14.58 45.81 18 E1a_E2a KnownJunction 0 6.30 16.77 8.96 3.33 0.00 5.79 6.71 2.34 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.01 4.14 3.26 3.15 0.00 29.11 19 E1a_E3a KnownJunction 0 11.11 12.37 9.43 9.16 0.00 30.10 4.50 6.70 7.96 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.76 45.55 9.01 12.23 6.06 57.36 20 ER1f ExonRegion 0 10.32 21.61 11.03 5.11 5.69 21.09 5.79 4.75 8.03 1.15 0.00 0.00 0.00 1.62 0.00 0.00 0.00 19.63 29.46 3.19 7.16 13.80 63.87 21 ER1g ExonRegion 0 11.59 25.05 15.74 9.61 1.69 29.15 7.25 6.91 11.57 1.15 0.00 0.00 0.00 1.62 0.00 0.00 0.00 29.95 43.59 8.85 12.76 9.32 75.43 22 I1 Intron 0 3.04 9.82 9.36 7.92 3.30 2.34 8.02 6.63 3.66 2.27 0.00 0.00 0.00 0.36 0.41 0.00 0.04 15.59 5.61 14.56 4.82 1.01 4.88 23 I1_AR2 ActiveIntronRegion 0 1.83 7.49 7.27 7.08 3.66 1.81 12.76 4.30 4.11 4.08 0.00 0.00 0.00 0.16 0.00 0.00 0.00 20.61 7.46 17.49 5.54 0.51 7.15 24 I1_AR3 ActiveIntronRegion 0 0.00 7.19 9.58 12.51 6.31 0.00 7.66 5.06 4.94 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.69 2.96 21.28 10.31 0.00 13.21 25 I1_SR3 SilentIntronRegion 0 4.78 15.96 7.65 6.98 3.46 2.17 9.19 5.72 3.54 1.81 0.00 0.00 0.00 0.50 0.00 0.00 0.00 18.16 7.03 17.15 5.99 1.41 6.87 26 I1_AR4 ActiveIntronRegion 0 4.94 18.88 11.69 14.26 2.20 1.03 13.55 16.75 8.49 0.50 0.00 0.00 0.00 1.08 2.45 0.00 0.00 39.23 13.15 13.31 14.58 3.15 10.09 27 I1_AR5 ActiveIntronRegion 0 3.91 14.69 16.59 9.63 4.57 2.06 12.12 8.22 4.53 1.51 0.00 0.00 0.00 0.21 0.41 0.00 0.00 28.23 6.63 22.34 8.34 1.76 7.15 28 I1_SR4 SilentIntronRegion 0 4.07 12.18 12.12 10.41 3.78 2.48 7.75 9.05 4.66 3.02 0.00 0.00 0.00 0.20 0.54 0.00 0.00 18.78 5.57 17.59 4.89 1.23 4.79 29 E2_Aa NovelBoundary 0 0.00 14.60 4.70 6.96 3.82 0.00 9.49 0.00 2.89 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.16 18.17 14.51 0.00 0.00 7.09 30 ER2a ExonRegion 0 4.17 13.70 5.98 4.05 1.98 6.51 4.76 3.76 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.59 8.82 4.04 3.19 0.00 9.96 31 E2_Da NovelBoundary 0 0.00 9.01 1.51 5.23 0.00 0.00 6.32 1.85 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.69 13.18 24.29 6.30 0.00 0.00 32 E2a_E3a KnownJunction 0 3.48 6.18 3.67 5.19 0.00 0.00 0.00 2.55 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.44 0.00 0.00 33 I2_AR2 ActiveIntronRegion 0 0.00 14.01 6.26 7.87 0.00 0.00 15.74 7.68 1.24 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.58 4.96 20.09 4.16 0.00 5.87 34 I2_SR2 SilentIntronRegion 0 1.97 12.46 5.44 7.97 2.42 1.38 10.40 4.38 2.32 1.86 0.00 0.00 0.00 0.37 0.46 0.00 0.00 10.93 7.32 19.32 3.51 1.52 4.15 35 I2_SR3 SilentIntronRegion 0 4.66 14.12 10.30 13.38 5.63 2.56 13.69 8.87 4.04 1.97 0.00 0.00 0.00 0.81 0.00 0.00 0.00 8.92 5.90 21.41 1.90 3.16 4.49 36 E3_Aa NovelBoundary 0 111.13 80.38 96.54 150.20 65.45 28.39 115.13 126.22 90.16 102.67 19.22 11.40 37.01 25.55 31.40 42.89 64.80 51.57 43.01 96.39 23.29 13.84 36.02 37 ER3a ExonRegion 0 5.52 19.19 14.83 14.15 10.01 12.65 10.22 18.43 13.25 1.56 0.00 0.00 0.00 0.75 1.66 0.00 0.00 12.15 24.41 11.83 14.58 5.43 26.92 38 E3_Da NovelBoundary 0 0.00 11.51 15.91 6.89 0.00 0.00 4.02 5.87 4.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.87 0.00 16.94 2.53 2.63 0.00 39 E3a_E4a KnownJunction 0 6.45 12.30 26.88 14.68 14.43 16.01 15.59 22.30 18.34 3.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.10 25.51 8.50 11.06 5.51 24.67 40 E4_Aa NovelBoundary 0 30.67 63.02 36.72 30.47 35.74 5.68 18.50 19.72 21.15 1.67 4.79 0.00 0.00 0.00 0.00 0.00 42.82 12.27 0.00 2.62 53.31 21.06 24.24 41 ER4a ExonRegion 0 2.99 11.10 30.63 16.14 5.01 4.13 7.91 24.34 24.36 3.98 0.00 0.00 0.00 0.11 0.00 0.00 0.00 27.70 29.58 12.86 18.36 14.61 45.50 42 E4_Da NovelBoundary 0 49.79 22.76 20.37 15.45 19.35 0.00 33.25 15.16 20.86 6.39 0.00 0.00 0.00 0.00 0.00 0.00 43.38 2.32 21.93 9.40 47.45 30.31 51.22 43 E4a_E5a KnownJunction 0 0.00 18.42 19.10 22.81 12.22 2.38 4.50 21.32 16.93 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 41.79 23.20 3.15 16.90 40.89 44 E4a_E6a KnownJunction 0 0.00 5.99 14.49 1.73 0.00 0.00 8.13 3.41 7.06 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.37 29.55 0.00 5.56 3.12 20.74 45 E4a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 46 E5_Aa NovelBoundary 0 57.94 8.49 18.51 10.39 51.53 8.12 26.54 19.55 20.49 4.73 17.85 0.00 0.00 0.00 0.00 0.00 91.07 2.45 4.33 8.31 104.09 28.72 20.32 47 ER5a ExonRegion 0 7.49 16.47 24.34 31.48 14.02 10.50 11.01 18.57 17.17 5.36 0.81 0.00 0.00 0.00 0.00 0.00 2.05 20.05 18.24 12.48 17.48 8.37 16.89 48 E5_Da KnownBoundary 0 7.56 14.47 27.20 28.33 12.99 2.33 5.96 20.41 14.81 4.59 0.00 0.00 0.00 0.00 0.00 4.19 8.23 19.61 9.32 3.07 11.43 5.02 8.19 49 E5a_E6a KnownJunction 0 3.33 6.25 7.01 1.73 8.06 4.66 0.00 7.43 9.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.39 16.09 0.00 2.90 3.12 3.76 50 ER5b ExonRegion 0 19.24 34.41 29.46 27.13 24.01 16.08 15.77 19.17 13.04 5.72 0.00 0.00 0.00 0.00 0.00 0.23 3.34 9.79 6.91 12.13 15.48 2.08 15.06 51 E5_Db KnownBoundary 0 23.63 42.10 31.70 21.58 4.33 16.13 10.25 14.33 7.26 4.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.17 12.99 17.96 20.45 3.12 19.63 52 ER5c ExonRegion 0 30.37 28.88 30.43 38.56 22.91 21.44 29.40 37.23 41.35 37.06 10.82 14.78 19.80 12.57 24.51 20.23 22.15 49.72 25.32 34.51 24.04 15.96 42.16 53 E5_Dc NovelBoundary 0 1211.70 1010.28 493.51 604.92 852.38 660.93 1088.08 534.25 485.04 392.24 256.33 97.08 284.07 80.46 162.68 769.97 664.80 486.95 639.17 764.45 322.54 342.42 654.82 54 Ix_SR4 SilentIntronRegion 0 6.35 17.27 7.26 11.22 5.09 5.93 11.01 4.58 8.83 3.72 0.00 0.00 0.00 0.39 0.18 0.77 4.26 10.91 9.63 13.73 6.81 2.43 7.21 55 Ix_AR5 ActiveIntronRegion 0 0.00 20.13 6.98 17.72 2.68 2.75 13.64 8.64 11.12 3.78 0.00 0.00 0.00 1.62 0.00 0.00 2.64 7.39 6.37 7.66 3.53 2.71 2.94 56 Ix_AR4 ActiveIntronRegion 0 6.14 20.95 5.45 15.58 3.75 2.26 7.36 10.06 7.86 1.94 0.27 0.00 0.00 0.37 0.28 0.41 2.63 9.47 6.07 10.62 7.07 2.04 7.13 57 E6_Aa NovelBoundary 0 3.33 2.57 9.88 16.31 0.00 0.00 4.37 4.07 10.07 3.95 0.00 0.00 0.00 0.00 0.00 0.00 4.77 6.01 13.08 2.62 0.00 0.00 7.94 58 ER6a ExonRegion 0 6.98 13.94 26.87 18.56 8.77 10.40 17.07 19.71 25.70 11.64 1.25 0.00 0.00 0.80 0.94 0.00 0.65 32.92 20.81 17.48 23.28 6.29 33.21 59 E6_Da KnownBoundary 0 6.67 8.81 27.44 18.68 16.21 5.51 9.41 19.14 11.28 7.95 0.00 0.00 0.00 0.00 0.00 0.00 4.77 21.85 11.95 6.26 22.05 8.02 23.22 60 E6_Db KnownBoundary 0 0.00 3.35 0.00 0.00 0.00 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E6_Dc KnownBoundary 0 7.04 12.89 7.57 21.34 0.00 10.33 0.00 2.55 11.83 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.48 4.24 6.52 2.66 0.00 0.00 62 E6c_E6b KnownJunction 0 10.22 5.99 14.04 13.22 4.24 2.33 12.10 8.17 5.01 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.42 0.00 2.81 14.27 5.57 0.00 63 E6c_E6c KnownJunction 0 0.00 0.00 0.00 2.06 0.00 2.90 1.85 2.42 3.62 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.52 0.00 0.00 3.15 0.00 0.00 64 E6c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 3.14 0.00 0.00 11.95 5.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.29 0.00 0.00 0.00 3.12 0.00 65 ER6b ExonRegion 0 11.54 24.96 28.63 35.68 10.70 10.34 15.17 24.36 24.25 11.47 0.00 0.00 0.00 0.00 0.00 0.00 3.30 42.83 9.85 10.83 27.05 9.85 17.89 66 ER6c ExonRegion 0 13.49 24.40 31.40 33.22 11.37 14.67 12.08 21.61 25.78 11.47 0.00 0.00 0.00 0.00 0.00 0.00 3.30 42.50 6.37 11.70 25.89 8.85 14.68 67 ER6d ExonRegion 0 4.23 6.16 6.43 10.13 2.81 5.07 5.65 3.74 4.03 1.77 0.32 0.81 1.41 0.88 1.47 0.61 2.12 9.64 7.76 7.29 7.65 1.85 6.88 68 E6_Ab KnownBoundary 0 7.48 12.23 7.51 1.73 3.99 5.68 2.03 1.89 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.61 2.16 4.61 2.43 5.93 0.00 8.71 69 ER6e ExonRegion 0 7.19 6.34 21.83 13.72 3.30 3.45 11.70 4.74 11.00 4.93 1.93 0.00 0.00 0.00 0.00 0.00 15.20 6.92 5.04 5.59 15.02 6.30 13.86 70 E6_Ac KnownBoundary 0 7.19 0.00 20.28 15.38 0.00 0.00 15.02 3.41 14.00 7.47 2.00 0.00 0.00 0.00 0.00 0.00 9.54 6.01 10.45 6.26 13.96 7.65 16.30 71 ER6f ExonRegion 0 4.27 9.09 9.96 13.68 13.50 1.09 11.85 6.54 12.40 6.97 0.15 0.00 0.00 0.55 0.00 1.37 6.54 6.05 11.00 15.68 16.49 9.26 25.49 72 E6_Dd KnownBoundary 0 0.00 0.00 1.18 4.40 11.12 2.27 3.31 0.00 3.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.26 0.00 0.00 5.75 2.97 0.00 0.00 73 E6d_E7a KnownJunction 0 3.11 0.00 0.00 2.06 0.00 0.00 0.00 2.38 0.00 2.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 74 E6_De KnownBoundary 0 6.82 3.03 2.84 3.43 4.16 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 75 ER6g ExonRegion 0 8.47 2.03 4.90 8.18 16.05 1.83 3.97 0.00 4.94 1.15 0.00 0.00 0.00 0.00 0.00 2.97 9.90 1.85 0.00 6.38 6.61 0.00 14.68 76 ER6h ExonRegion 0 10.18 11.12 3.77 5.37 7.89 7.20 12.80 2.11 2.52 4.85 2.38 11.11 16.39 7.24 25.62 7.32 10.66 9.18 9.79 16.80 5.87 4.27 13.87 77 E6_Df NovelBoundary 0 28.08 23.55 3.19 3.50 39.39 12.10 18.81 9.86 5.84 1.26 2.00 0.00 12.50 0.00 5.69 0.00 0.00 12.68 0.00 13.55 2.78 7.96 11.27 78 E7_Aa NovelBoundary 0 6.59 16.84 9.79 15.35 11.54 13.46 9.36 15.32 22.48 12.41 5.21 0.00 0.00 0.00 0.00 0.00 3.83 7.42 4.42 2.81 10.81 6.00 20.66 79 ER7a ExonRegion 0 6.39 11.51 3.15 6.58 12.13 6.91 8.85 11.00 6.99 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 14.78 3.73 8.10 4.55 5.01 7.87 80 E7_Da KnownBoundary 0 5.70 23.88 11.15 19.68 23.34 15.33 11.70 8.87 13.72 6.98 0.00 0.00 0.00 0.00 0.00 0.00 4.02 18.70 3.67 11.76 11.12 0.00 4.18 81 ER7b ExonRegion 0 5.48 13.45 5.23 10.47 10.66 2.08 11.67 7.17 9.48 3.88 0.86 0.00 0.00 0.60 0.00 1.33 6.86 12.64 8.38 6.14 6.01 3.76 7.01 82 E7_Db NovelBoundary 0 3.70 26.31 6.71 27.50 8.06 5.00 11.31 5.09 12.15 4.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.46 8.28 0.00 8.46 2.63 8.11 83 Ix_AR4 ActiveIntronRegion 0 13.25 36.43 11.53 19.68 13.15 6.19 9.09 13.98 9.19 4.19 0.24 0.00 0.00 0.00 0.00 0.19 2.75 1.52 3.72 4.14 2.14 3.73 4.33 84 Ix_AR8 ActiveIntronRegion 0 41.77 6.11 4.59 2.75 5.54 0.00 5.29 6.20 3.60 0.96 0.00 0.00 0.44 0.00 0.00 0.56 5.24 0.95 0.93 1.00 2.90 1.57 4.10 85 Ix_AR7 ActiveIntronRegion 0 16.85 2.66 0.94 1.36 0.00 0.00 1.32 1.73 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.22 0.00 3.19 0.00 2.20 0.00 4.40 86 Ix_AR6 ActiveIntronRegion 0 11.43 4.07 0.00 1.36 0.00 0.00 0.00 0.69 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 3.19 0.00 2.20 0.00 2.94 87 Ix_AR1 ActiveIntronRegion 0 13.33 2.03 1.23 0.00 2.68 0.00 0.66 3.46 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.60 1.85 0.00 0.00 0.00 0.00 2.94 88 ER8a ExonRegion 0 1.78 0.57 0.77 0.85 1.50 0.00 2.21 0.36 2.77 0.00 0.27 0.00 0.00 0.35 0.00 0.42 2.77 0.00 3.12 0.81 1.85 1.17 2.06