Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NKIRAS1 Gene 0 30.62 78.39 26.95 38.92 29.79 39.64 33.42 29.05 31.24 32.32 24.81 69.11 51.60 30.14 39.34 28.33 40.04 34.26 28.49 53.65 15.62 51.86 31.58 2 421515 Transcript 0 0.60 0.96 4.85 1.35 0.51 0.35 0.50 0.49 2.09 0.32 1.48 1.01 1.05 1.05 1.78 4.39 1.89 1.38 0.60 1.63 1.46 0.20 3.34 3 425478 Transcript 0 0.28 4.51 0.23 0.00 0.22 6.05 0.37 0.20 0.00 0.11 0.04 0.00 0.00 0.17 0.48 0.28 0.54 0.29 0.33 2.08 0.07 0.32 1.30 4 437230 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 388759 Transcript 0 13.33 32.39 11.18 17.36 13.92 21.37 20.05 13.75 23.37 18.05 6.99 29.26 45.08 7.53 5.37 9.36 13.09 14.13 12.00 36.07 3.51 25.28 14.21 6 412028 Transcript 0 0.00 6.71 1.83 0.00 0.00 0.00 1.94 0.00 1.68 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 3.12 0.00 7 416026 Transcript 0 0.00 0.00 1.63 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 8 415901 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 443659 Transcript 0 0.57 1.77 0.73 0.61 1.08 0.55 1.33 0.86 1.11 0.86 1.17 2.18 2.10 1.01 0.90 1.89 2.32 2.25 1.92 2.28 0.96 0.70 1.97 10 418853 Transcript 0 2.96 9.35 3.19 6.81 5.89 12.47 6.36 7.26 6.18 5.73 7.35 10.39 16.88 9.74 10.44 8.92 13.20 32.15 10.83 14.04 7.05 8.75 12.92 11 ER1a ExonRegion 0 1.20 1.93 9.69 2.70 1.01 0.70 1.00 0.98 4.19 0.65 2.96 2.03 2.09 2.10 3.56 4.51 3.78 2.76 1.21 3.27 2.92 0.40 6.68 12 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I1_AR2 ActiveIntronRegion 0 32.04 72.27 38.75 30.79 32.51 19.53 34.85 22.01 12.37 8.37 4.65 9.18 1.47 8.21 12.81 3.65 6.31 5.89 15.58 16.95 1.81 5.56 4.48 14 I1_AR3 ActiveIntronRegion 0 3.17 19.52 29.58 9.75 4.82 4.95 10.33 19.32 12.70 4.10 6.96 6.42 3.72 21.84 11.47 9.81 15.84 16.83 18.16 25.53 1.98 6.88 7.93 15 ER2a ExonRegion 0 0.28 4.51 0.23 0.00 0.22 6.05 0.37 0.20 0.00 0.11 0.04 0.00 0.00 0.17 0.48 0.28 0.54 0.29 0.33 2.08 0.07 0.32 1.30 16 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 17 E2_Ac KnownBoundary 0 0.00 10.06 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 4.35 18 E2_Ad KnownBoundary 0 22.15 18.35 2.93 0.00 12.65 34.01 12.98 0.00 0.00 1.07 2.58 0.00 0.00 14.54 4.45 7.86 14.03 6.80 8.94 19.49 5.99 20.08 16.99 19 ER2b ExonRegion 0 8.47 17.62 2.45 0.00 8.03 20.17 9.27 3.46 0.00 3.25 1.93 0.00 0.00 7.85 11.61 2.97 9.90 3.70 4.78 12.77 4.41 9.38 14.68 20 ER2c ExonRegion 0 12.70 23.29 4.90 2.73 10.70 25.67 9.75 3.46 1.24 5.42 7.20 0.00 0.00 10.34 11.61 3.78 9.90 7.39 6.37 16.44 8.21 12.69 20.82 21 E2_Ae KnownBoundary 0 21.63 50.85 11.27 9.12 3.74 26.80 8.35 10.80 9.75 16.49 11.85 13.50 0.00 13.77 24.97 35.97 34.60 70.76 41.04 47.94 24.34 41.46 76.66 22 ER2d ExonRegion 0 20.71 35.88 7.35 3.60 10.70 34.45 12.29 5.43 3.84 9.13 7.80 0.00 0.00 13.51 17.20 13.16 23.46 11.15 11.83 31.84 16.69 29.54 44.89 23 ER2e ExonRegion 0 12.40 28.31 7.53 5.99 2.08 19.50 12.65 6.61 12.10 12.23 7.03 0.00 0.00 24.16 23.35 22.74 41.81 18.27 16.03 36.58 26.27 25.80 34.03 24 E2_Da KnownBoundary 0 6.00 25.59 2.45 9.39 4.33 7.33 12.10 8.17 15.68 3.98 12.48 0.00 5.68 8.12 13.60 33.07 26.09 37.18 12.89 29.02 6.30 3.12 12.38 25 E2a_E4b KnownJunction 0 0.00 6.71 1.83 0.00 0.00 0.00 1.94 0.00 1.68 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 3.12 0.00 26 ER2f ExonRegion 0 2.58 16.11 5.73 3.86 0.87 7.26 4.50 6.98 10.44 9.50 6.78 0.56 5.42 9.05 9.42 15.36 29.37 14.25 6.33 19.73 13.48 10.36 15.67 27 E2b_E4a KnownJunction 1 3.78 12.04 15.11 8.72 0.00 8.23 0.00 14.70 14.53 22.16 16.95 6.15 0.00 17.13 15.70 3.67 85.65 17.53 21.65 53.50 32.56 10.59 12.80 28 E2b_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.21 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 6.14 0.00 0.00 0.00 29 E2b_E5b KnownJunction 0 0.00 0.00 1.63 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 30 ER3a ExonRegion 0 1.13 3.54 1.47 1.22 2.15 1.11 2.66 1.73 2.22 1.72 2.33 4.35 4.20 2.01 1.81 3.79 4.65 4.50 3.84 4.56 1.92 1.39 3.93 31 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 I3_SR1 SilentIntronRegion 0 3.42 3.77 0.42 1.41 3.10 1.70 3.38 2.99 2.13 2.38 1.34 4.31 18.67 3.39 2.93 6.20 3.83 3.41 2.95 5.92 1.01 1.93 3.40 33 I3_SR2 SilentIntronRegion 0 3.44 5.88 3.75 4.78 2.46 3.19 4.40 6.72 4.55 5.56 3.23 16.72 12.46 3.11 4.21 6.25 5.49 2.98 1.97 11.09 1.14 6.31 2.68 34 E4_Ab NovelBoundary 0 0.00 2.83 15.52 18.38 0.00 0.00 0.00 16.43 5.96 12.65 4.00 11.55 0.00 6.71 4.70 3.25 28.14 16.29 7.15 24.61 9.95 6.98 13.91 35 ER4a ExonRegion 1 2.12 12.61 13.97 10.90 3.21 5.50 2.12 12.10 17.29 19.96 18.56 11.26 5.63 18.84 21.47 5.94 89.78 19.59 25.48 58.30 29.09 15.42 18.21 36 ER4b ExonRegion 0 21.82 52.72 17.01 24.30 27.97 38.57 36.43 25.47 28.99 30.43 34.05 52.14 52.11 70.93 91.60 47.63 70.70 104.63 67.33 107.67 58.71 54.65 80.85 37 E4_Da NovelBoundary 0 124.84 87.88 151.00 187.85 109.25 71.95 149.89 168.98 200.35 170.95 33.22 13.95 19.80 17.66 34.86 61.61 110.99 168.63 92.80 132.12 70.12 43.35 94.92 38 E4a_E5b KnownJunction 0 24.23 33.42 18.63 31.70 22.58 82.57 28.88 34.58 31.19 27.78 17.11 43.81 75.16 55.09 49.94 53.15 74.71 165.48 57.88 71.01 40.34 32.09 81.86 39 ER5a ExonRegion 0 2.96 9.35 3.19 6.81 5.89 12.47 6.36 7.26 6.18 5.73 7.35 10.39 16.88 9.74 10.44 8.92 13.20 32.15 10.83 14.04 7.05 8.75 12.92 40 ER5b ExonRegion 0 18.41 95.58 32.84 45.07 47.97 69.55 51.86 40.08 38.94 36.95 50.76 56.40 54.23 50.73 51.27 54.20 72.68 101.66 51.23 92.20 45.74 70.23 72.80 41 E5_Da NovelBoundary 0 0.00 5.99 16.97 22.81 0.00 0.00 6.14 8.34 4.86 1.67 0.00 0.00 0.00 0.00 0.00 3.42 13.28 2.57 4.80 19.81 6.18 3.06 8.62 42 E5a_E6a KnownJunction 0 31.34 156.49 26.37 25.94 33.62 44.80 36.66 31.87 36.72 36.16 42.48 75.47 46.59 61.75 79.24 23.16 64.80 52.52 67.20 80.73 49.36 69.87 49.77 43 E6_Aa NovelBoundary 0 14.08 14.73 3.67 16.55 4.33 0.00 5.79 18.11 7.38 1.67 32.48 12.00 20.45 6.89 21.39 8.37 21.32 11.32 17.98 22.95 6.30 10.90 11.87 44 ER6a ExonRegion 0 60.29 177.44 44.96 67.79 57.00 68.02 55.84 49.92 60.94 50.20 63.29 112.28 79.05 84.53 87.25 65.26 94.58 78.31 76.49 105.20 45.35 91.96 68.03 45 E6a_E7a KnownJunction 0 42.82 151.22 53.66 78.11 52.04 52.41 81.26 49.00 55.96 64.66 68.86 175.11 88.31 99.71 51.92 68.70 77.79 77.43 79.63 124.45 48.56 91.30 76.31 46 E6_Db NovelBoundary 0 0.00 0.00 13.57 11.22 16.04 0.00 3.84 8.95 9.09 1.21 2.21 6.30 0.00 0.00 0.00 3.67 0.00 0.00 4.80 5.75 0.00 8.51 0.00 47 E6b_E7b KnownJunction 0 0.00 5.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.44 0.00 0.00 0.00 0.00 3.12 0.00 48 ER6b ExonRegion 0 0.00 3.56 3.98 0.68 5.35 3.67 6.29 0.00 0.00 1.15 1.45 0.00 1.17 0.41 6.53 3.72 2.48 0.00 2.39 0.00 0.00 0.00 2.94 49 I6 Intron 0 21.04 17.76 9.05 14.95 9.37 3.34 12.04 7.57 5.05 7.27 7.95 8.35 13.93 6.62 16.07 15.97 13.58 14.61 9.64 16.44 3.70 7.06 12.83 50 I6_SR1 SilentIntronRegion 0 14.26 12.02 3.97 6.11 6.10 2.28 10.01 1.87 2.86 2.30 5.41 6.07 7.18 6.04 8.49 11.71 7.87 4.86 6.93 13.44 1.60 3.89 8.52 51 I6_SR2 SilentIntronRegion 0 5.82 15.25 7.76 18.27 9.37 4.13 15.56 8.37 3.22 10.25 6.28 9.36 23.04 9.10 10.45 7.43 12.38 8.27 12.74 14.89 4.40 4.69 8.81 52 I6_SR3 SilentIntronRegion 0 26.83 20.78 11.53 18.26 10.82 3.66 12.32 9.94 6.35 8.93 9.39 9.18 15.27 6.44 20.46 19.43 16.34 20.07 10.29 18.08 4.51 8.89 15.48 53 E7_Aa NovelBoundary 0 26.00 27.50 1.83 27.04 3.65 0.00 6.27 11.71 4.95 5.16 2.37 5.85 0.00 0.00 0.00 15.72 0.00 4.39 3.95 8.88 5.31 5.27 7.77 54 E7_Ab NovelBoundary 0 19.41 12.63 7.63 7.49 8.32 7.67 7.15 1.81 4.17 4.78 0.00 19.06 6.82 0.00 14.46 3.59 4.21 6.22 0.00 12.66 5.50 3.12 0.00 55 ER7a ExonRegion 0 40.21 161.47 46.81 77.41 51.37 61.25 70.43 44.59 57.80 55.97 72.29 174.04 91.92 89.98 71.37 74.90 97.05 96.82 71.35 114.89 43.63 108.76 69.30 56 ER7b ExonRegion 0 63.38 228.13 61.02 83.16 65.66 74.23 80.15 62.55 60.22 69.61 56.72 171.82 94.33 76.27 88.98 78.05 96.08 101.94 74.92 105.66 34.39 122.62 69.07 57 E7_Da KnownBoundary 0 78.01 202.60 102.48 125.39 105.09 93.58 94.02 101.78 91.38 90.82 69.18 189.21 105.51 51.80 115.71 57.08 62.09 52.27 66.64 125.92 10.63 167.41 71.71 58 ER7c ExonRegion 0 73.46 149.87 63.93 94.07 64.09 89.61 69.32 65.39 65.03 74.23 49.57 165.02 112.78 50.20 82.13 47.61 68.08 43.28 44.61 96.54 18.47 112.88 49.82 59 E7_Db KnownBoundary 0 7.04 48.74 26.73 32.80 11.46 15.22 24.11 26.78 9.37 18.16 7.26 30.76 6.01 11.30 5.19 8.20 9.44 15.55 4.14 25.57 8.15 22.53 7.68 60 E7_Dc KnownBoundary 0 3.26 30.59 3.16 14.08 8.40 24.25 9.63 10.60 19.73 16.65 5.05 38.56 14.77 8.30 10.75 15.89 4.49 4.02 8.85 31.96 0.00 15.43 3.41 61 ER7d ExonRegion 1 22.58 91.51 19.61 43.61 39.24 44.01 39.28 34.57 37.47 29.82 12.89 66.39 78.17 30.86 58.03 27.74 22.01 31.41 15.93 70.92 8.81 49.31 15.66 62 ER7e ExonRegion 1 26.22 69.39 10.70 30.51 27.27 34.11 24.32 27.73 25.16 26.14 6.54 49.21 53.29 14.09 22.82 10.32 24.58 12.79 10.62 48.67 3.80 39.05 14.08 63 E7_Dd KnownBoundary 1 17.48 51.44 4.82 25.57 7.47 0.00 16.43 15.48 21.33 19.47 5.11 74.57 70.13 12.60 10.75 3.16 4.30 8.46 4.61 44.81 0.00 29.21 7.85 64 E7_De KnownBoundary 0 0.00 3.35 0.00 8.19 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 8.28 0.00 0.00 4.36 14.03 2.11 0.00 3.26 0.00 6.18 0.00 65 E7_Df KnownBoundary 0 3.78 3.35 7.07 0.00 0.00 0.00 13.43 5.05 1.77 3.33 0.00 0.00 16.56 0.00 0.00 0.00 4.77 0.00 4.52 3.13 0.00 9.25 4.35 66 ER7f ExonRegion 1 14.97 49.24 10.68 33.29 23.13 4.85 30.17 21.73 31.41 35.31 1.93 91.54 94.47 14.15 9.95 12.74 25.46 16.63 4.55 44.98 0.31 51.05 12.80 67 E7_Dg KnownBoundary 0 3.63 6.71 1.80 6.16 12.90 2.90 2.21 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 4.27 4.77 0.00 0.00 3.26 0.00 0.00 4.27 68 E7_Dh KnownBoundary 0 17.19 18.81 6.98 15.05 3.82 5.79 12.67 8.21 12.70 11.31 4.26 11.70 19.64 7.06 0.00 4.10 8.51 3.61 9.04 26.27 0.00 11.33 7.26 69 ER7g ExonRegion 1 12.70 40.67 13.48 34.07 20.07 14.67 27.80 19.01 32.11 33.26 0.97 88.75 100.84 13.81 11.61 14.86 24.76 18.48 9.56 39.36 2.20 55.21 14.68 70 ER7h ExonRegion 1 18.18 38.16 12.54 34.47 20.46 16.72 32.01 21.05 33.06 33.60 2.16 66.72 93.80 11.94 11.09 17.31 27.57 15.65 11.43 43.80 2.20 52.46 16.07 71 ER7i ExonRegion 1 16.93 29.15 12.25 31.80 21.41 20.17 31.33 22.47 36.64 30.97 5.80 51.95 76.60 11.37 5.80 15.85 19.81 17.25 12.74 41.13 2.20 50.70 24.47 72 ER7j ExonRegion 1 13.33 32.39 11.18 17.36 13.92 21.37 20.05 13.75 23.37 18.05 6.99 29.26 45.08 7.53 5.37 9.36 13.09 14.13 12.00 36.07 3.51 25.28 14.21 73 IG50 Intergenic 0 10.70 53.52 5.70 21.44 12.74 17.45 15.95 11.49 11.49 10.16 7.18 28.85 30.52 7.62 10.33 15.91 19.63 11.91 15.16 34.17 4.58 17.04 11.35 74 IG50_AR1 ActiveIntergenicRegion 0 11.04 56.04 6.00 22.62 13.48 18.49 16.75 12.05 12.11 10.79 7.60 30.12 31.86 8.00 10.81 16.88 20.61 12.37 15.62 35.76 4.86 18.09 11.77