Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 OXSR1 Gene 0 80.42 133.57 61.00 63.10 76.12 85.98 99.68 62.15 33.99 42.11 191.40 153.01 109.49 228.34 97.00 115.55 179.09 100.92 88.75 92.01 65.63 88.72 72.09 2 492714 Transcript 0 0.00 0.12 1.33 2.05 0.16 0.34 1.29 0.00 0.23 0.00 2.77 0.00 0.47 1.88 0.00 0.18 0.18 2.81 3.61 4.85 1.48 0.83 0.36 3 446845 Transcript 0 3.04 2.68 1.16 1.93 2.54 2.00 5.21 1.88 2.55 4.54 13.63 18.74 12.18 10.00 3.06 3.06 12.77 1.02 3.03 4.74 2.29 13.92 1.86 4 311806 Transcript 0 84.00 136.60 73.69 85.55 73.61 128.67 128.57 100.49 49.11 57.69 279.38 230.58 152.08 379.56 120.07 188.65 295.78 168.09 152.55 146.25 111.76 145.57 112.51 5 426620 Transcript 0 2.16 4.38 0.52 2.88 4.52 5.63 3.81 2.46 2.18 2.51 13.68 5.28 5.19 5.22 1.13 6.30 7.57 3.15 4.45 5.27 2.50 4.37 5.44 6 483695 Transcript 0 7.25 18.07 7.56 6.31 10.67 21.04 21.91 11.21 7.10 9.60 61.65 70.14 68.13 65.26 15.70 30.84 55.85 24.33 17.43 34.35 15.80 20.95 17.43 7 467900 Transcript 0 1.95 5.41 3.37 3.72 3.71 1.49 7.18 0.26 2.13 1.24 11.46 16.37 10.90 4.54 1.52 3.32 11.67 1.71 3.08 3.28 2.54 5.65 1.46 8 ER1a ExonRegion 0 0.00 0.25 1.12 0.26 0.33 0.67 0.51 0.00 0.45 0.00 1.11 0.00 0.94 3.76 0.00 0.36 0.36 1.26 2.42 3.19 2.96 1.66 0.72 9 E1a_E2a KnownJunction 0 0.00 0.00 1.54 3.83 0.00 0.00 2.08 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 0.00 0.00 4.35 4.80 6.52 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.00 0.00 0.00 3.63 0.00 0.82 1.32 0.00 0.00 0.00 3.01 0.48 0.00 1.80 0.00 0.33 4.77 6.98 4.96 8.51 1.96 5.32 1.63 11 ER1c ExonRegion 1 5.65 3.67 1.41 3.63 3.70 12.67 7.25 2.69 2.00 6.17 45.79 5.99 2.96 42.07 12.72 28.05 56.54 34.87 29.63 17.95 20.30 2.66 17.31 12 E1_Ac KnownBoundary 0 9.85 0.00 1.69 1.73 4.33 25.78 18.46 4.64 1.30 5.48 27.95 6.30 0.00 32.55 19.28 12.22 44.51 26.28 12.05 11.25 14.33 5.88 39.78 13 ER1d ExonRegion 0 3.18 16.04 3.97 4.51 5.51 13.88 10.26 8.01 7.21 10.10 56.97 11.50 19.09 76.45 22.19 34.22 74.95 42.71 30.09 29.47 35.63 15.46 24.48 14 E1b_E2a KnownJunction 1 6.74 46.37 9.96 13.85 19.69 23.11 48.49 25.06 24.10 20.20 113.82 30.91 38.31 102.30 25.59 35.38 170.45 62.43 74.54 72.35 54.30 33.00 51.22 15 ER2a ExonRegion 1 5.50 44.24 14.24 23.50 26.16 52.98 65.76 28.85 29.92 30.94 179.12 28.29 80.67 197.67 43.07 71.86 206.86 76.66 63.21 99.95 81.10 46.62 52.27 16 E2_Da KnownBoundary 1 0.00 50.06 23.83 33.66 27.25 86.77 81.22 45.76 39.38 45.05 229.32 36.46 114.28 261.05 85.05 117.49 204.49 93.15 59.48 120.23 86.30 50.03 44.99 17 ER2b ExonRegion 0 11.77 45.88 26.35 35.82 22.04 65.85 58.45 62.07 41.27 44.80 226.46 83.41 88.42 250.66 59.18 164.04 239.07 136.08 90.08 136.04 87.18 91.22 86.76 18 E2b_E3a KnownJunction 0 10.15 61.17 23.45 43.95 12.48 55.48 58.96 62.43 51.74 56.20 239.48 124.69 89.44 216.79 59.46 151.07 273.02 173.44 110.40 126.75 96.31 119.96 116.09 19 ER3a ExonRegion 0 6.72 48.84 29.60 40.40 27.54 38.64 63.91 55.77 44.89 53.61 232.73 162.34 132.10 241.11 58.21 106.78 251.90 93.88 79.22 139.14 77.80 94.89 88.07 20 E3a_E4a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 3.97 2.55 3.04 1.48 17.16 0.00 0.00 4.83 0.00 7.95 4.77 4.68 8.66 8.88 5.62 0.00 8.37 21 E3a_E5a KnownJunction 0 6.89 90.97 31.19 40.22 41.68 61.67 91.20 67.61 46.24 51.31 192.47 239.03 160.05 234.92 59.09 108.35 212.06 51.11 62.12 187.41 48.06 84.50 62.83 22 ER4a ExonRegion 0 2.56 4.53 0.00 3.62 5.96 6.99 3.92 4.53 2.81 5.63 11.39 5.63 3.22 10.74 2.94 7.57 9.40 4.49 4.00 3.90 3.54 4.09 5.74 23 E4a_E5a KnownJunction 0 3.19 8.35 0.00 1.70 8.66 13.74 0.00 1.93 1.79 1.10 19.27 5.70 6.66 2.47 0.00 7.95 11.41 3.44 4.52 5.82 0.00 9.06 4.10 24 ER5a ExonRegion 0 32.12 89.43 35.88 49.55 54.25 82.00 93.66 59.98 46.85 47.90 291.88 294.46 216.27 351.32 81.58 168.89 312.17 127.29 112.92 178.65 80.31 117.75 94.26 25 E5a_E6b KnownJunction 1 45.05 102.48 38.53 48.38 64.35 118.11 131.56 63.50 36.92 49.16 359.51 467.40 431.30 394.08 64.28 201.57 340.25 128.17 102.03 221.35 82.53 115.61 111.14 26 ER6a ExonRegion 0 11.99 29.83 11.03 12.27 18.73 41.57 36.63 21.89 13.17 17.97 122.42 127.00 128.19 129.39 29.98 60.43 108.93 48.66 33.98 65.96 30.85 40.28 34.26 27 ER6b ExonRegion 0 19.66 104.60 29.03 46.54 68.30 90.89 113.31 66.34 39.86 52.15 312.32 431.61 325.15 401.90 83.82 170.22 382.54 145.70 103.67 173.46 99.33 138.04 89.38 28 E6a_E7a KnownJunction 1 18.00 148.00 34.39 55.27 74.02 78.14 120.17 67.69 44.44 48.81 285.07 401.98 247.22 460.24 92.96 166.54 357.74 128.55 145.32 141.96 120.47 161.11 60.78 29 ER7a ExonRegion 0 31.81 184.17 37.67 47.12 77.77 83.67 125.42 64.72 41.25 58.11 326.80 308.49 243.92 385.27 93.47 187.38 359.29 143.75 153.13 149.15 93.06 116.51 88.45 30 E7a_E8a KnownJunction 0 38.75 153.26 38.26 32.40 103.74 110.28 97.64 62.60 39.58 52.00 239.80 321.40 254.53 313.62 65.15 172.95 246.84 129.38 117.93 143.05 84.26 85.85 66.84 31 ER8a ExonRegion 1 29.05 143.47 45.25 59.38 66.13 110.69 144.34 54.06 34.06 41.18 217.58 313.67 296.39 289.05 93.30 127.95 247.79 106.70 90.47 119.17 59.24 113.47 72.90 32 E8a_E9a KnownJunction 0 28.52 162.67 57.60 80.28 76.40 142.13 138.89 86.17 50.40 39.59 235.11 221.77 247.22 315.91 96.55 188.84 272.56 85.81 118.69 172.51 64.87 103.12 89.20 33 ER9a ExonRegion 1 54.22 168.07 86.50 81.79 84.63 124.85 147.89 91.22 46.02 59.16 281.06 368.39 410.94 318.28 96.37 170.08 279.27 89.68 105.00 160.94 53.53 143.17 83.65 34 E9_Da KnownBoundary 0 11.11 5.26 17.24 1.60 0.00 0.00 11.79 2.55 0.00 1.16 2.05 0.00 0.00 0.00 10.75 0.00 0.00 0.00 0.00 5.05 3.15 3.12 4.35 35 E9a_E10a KnownJunction 1 73.79 239.37 62.98 82.64 134.47 182.28 185.57 75.66 51.76 49.51 213.79 510.62 452.41 323.74 174.92 210.71 261.06 63.59 75.67 136.53 55.97 156.21 93.05 36 ER9b ExonRegion 0 2.50 6.32 4.09 0.35 2.62 0.51 7.20 0.53 1.03 1.23 0.87 13.27 8.07 1.14 1.42 1.25 2.77 0.00 0.89 2.73 0.75 1.62 0.60 37 ER10a ExonRegion 1 38.44 202.57 63.74 64.72 80.93 127.54 146.85 72.56 43.66 40.98 196.45 350.16 351.85 331.35 83.60 137.51 187.54 82.02 92.51 85.11 43.17 155.37 98.11 38 E10a_E11a KnownJunction 1 46.67 259.16 59.08 55.50 111.12 150.82 200.90 73.28 42.27 38.63 220.37 199.26 251.28 320.92 55.50 142.53 145.49 79.30 101.37 87.89 30.15 202.62 96.20 39 ER11a ExonRegion 0 39.70 188.44 51.76 46.79 113.68 128.67 145.29 59.53 42.05 52.18 330.47 362.56 306.91 292.93 77.72 157.48 244.22 105.66 91.70 104.19 82.91 166.21 106.34 40 E11_Da KnownBoundary 0 7.56 6.51 4.61 1.96 16.30 2.27 5.65 2.30 0.00 4.49 8.63 18.76 0.00 0.00 0.00 0.00 8.98 0.00 0.00 0.00 0.00 2.82 7.77 41 E11a_E12b KnownJunction 0 21.34 137.67 50.03 48.51 30.65 82.79 93.18 40.50 33.97 46.66 284.49 375.72 322.71 287.13 90.61 138.08 230.57 155.28 60.33 113.71 102.55 161.47 130.86 42 ER11b ExonRegion 0 2.87 4.64 2.07 4.15 3.48 1.78 7.33 0.83 1.07 1.83 6.89 9.79 10.88 2.85 1.59 1.73 4.69 0.00 0.64 2.50 0.85 4.33 3.54 43 ER12a ExonRegion 0 1.95 5.41 3.37 3.72 3.71 1.49 7.18 0.26 2.13 1.24 11.46 16.37 10.90 4.54 1.52 3.32 11.67 1.71 3.08 3.28 2.54 5.65 1.46 44 E12_Ab KnownBoundary 0 0.00 0.00 0.00 1.96 12.05 0.00 14.18 0.00 1.62 0.00 17.58 18.91 22.89 2.47 0.00 0.00 13.00 2.57 3.86 5.88 0.00 11.33 8.19 45 ER12b ExonRegion 1 35.70 112.06 45.30 63.62 74.31 85.98 97.52 58.54 48.50 55.37 337.96 400.51 303.58 374.03 74.93 191.31 293.18 181.84 135.87 128.81 103.79 162.69 143.41 46 E12a_E13a KnownJunction 0 64.53 92.75 43.94 48.88 71.82 81.15 115.09 52.78 35.47 56.97 424.16 213.97 158.27 291.66 61.44 172.43 452.73 121.58 142.40 110.51 150.24 91.36 97.57 47 E12a_E14a NovelJunction 0 3.63 0.00 3.19 5.09 0.00 2.16 7.73 8.38 1.77 1.34 21.53 6.30 6.01 14.24 4.45 3.59 21.04 0.00 9.13 5.82 5.07 0.00 8.45 48 ER13a ExonRegion 1 41.15 67.05 41.59 42.36 58.79 89.96 85.58 60.64 38.05 57.22 370.96 281.17 163.63 368.58 74.63 166.93 408.94 158.91 135.29 121.04 140.36 114.19 115.92 49 E13a_E14a KnownJunction 0 42.08 75.12 24.81 36.16 78.78 126.01 95.97 63.99 36.69 41.77 311.13 408.28 214.76 392.55 106.06 174.14 373.73 141.98 131.20 159.60 113.30 136.61 144.43 50 ER14a ExonRegion 0 41.01 123.43 48.35 54.32 50.58 110.81 91.40 77.04 49.67 58.62 317.47 316.32 210.48 365.54 82.58 170.12 335.64 200.41 142.06 140.60 122.42 144.87 148.13 51 E14a_E15a KnownJunction 1 52.82 81.37 42.84 46.85 52.38 101.87 81.08 87.86 43.43 53.46 267.01 195.66 81.16 350.58 55.01 138.34 312.48 152.01 116.52 107.89 95.08 84.62 92.02 52 ER15a ExonRegion 0 53.76 113.19 32.27 46.72 77.80 99.84 118.87 76.58 39.07 51.75 266.29 209.68 129.23 366.58 75.43 169.14 276.16 165.81 142.61 123.40 93.51 106.80 106.22 53 E15a_E16a KnownJunction 0 114.17 217.07 20.08 54.14 123.68 136.29 174.44 64.32 45.80 53.94 245.80 260.33 214.43 368.00 110.64 209.00 244.88 130.21 164.80 147.71 93.72 82.54 95.01 54 ER16a ExonRegion 0 82.78 203.32 38.70 64.93 117.23 116.19 167.27 78.99 48.73 61.09 300.95 304.29 200.17 417.83 98.04 202.27 308.42 169.50 145.02 143.40 96.59 152.41 86.27 55 E16_Da KnownBoundary 0 6.37 9.08 0.00 0.00 0.00 2.90 25.61 2.22 4.46 1.67 9.95 36.16 21.10 7.06 9.89 3.16 16.64 1.82 0.00 5.75 3.03 13.35 0.00 56 E16a_E17a KnownJunction 0 94.39 194.18 65.14 83.44 100.17 116.41 192.02 86.09 41.61 58.85 258.01 375.72 136.52 362.24 104.70 186.36 341.94 189.94 134.40 153.72 92.60 160.13 72.90 57 ER16b ExonRegion 0 3.04 2.68 1.16 1.93 2.54 2.00 5.21 1.88 2.55 4.54 13.63 18.74 12.18 10.00 3.06 3.06 12.77 1.02 3.03 4.74 2.29 13.92 1.86 58 ER17a ExonRegion 0 72.60 166.55 71.44 73.46 96.59 122.50 152.12 87.98 46.19 59.18 256.30 332.50 149.14 329.05 105.03 197.05 308.63 209.72 151.30 147.87 87.05 144.39 95.15 59 ER17b ExonRegion 0 52.95 109.43 69.20 75.03 75.06 149.07 126.47 86.66 38.48 43.91 257.04 225.65 148.57 325.02 73.37 185.88 262.45 162.88 146.15 151.28 82.40 118.05 114.93 60 E17b_E18a KnownJunction 0 40.97 113.27 70.43 79.48 54.58 117.26 99.23 98.54 36.72 39.76 223.85 221.92 150.80 249.87 59.09 128.68 234.88 153.83 155.11 130.97 105.70 136.18 103.12 61 I17 Intron 0 19.85 26.17 5.25 10.70 10.99 11.17 17.94 8.82 4.66 6.55 24.48 17.75 24.27 22.81 4.42 14.85 12.43 10.20 4.58 12.82 4.98 17.54 13.07 62 I17_SR1 SilentIntronRegion 0 19.92 26.28 5.27 10.74 11.03 11.21 18.02 8.85 4.68 6.58 24.56 17.82 24.37 22.90 4.43 14.90 12.47 10.24 4.60 12.87 5.00 17.61 13.12 63 E18_Aa NovelBoundary 0 26.97 30.65 17.30 20.18 4.33 18.17 21.07 22.34 9.37 9.72 28.01 0.00 43.83 9.18 16.44 7.86 37.12 20.98 21.46 15.15 0.00 16.47 12.12 64 ER18a ExonRegion 0 68.51 108.47 53.09 74.18 54.26 117.65 106.43 94.83 50.91 54.59 303.29 241.12 165.23 398.46 107.61 206.72 315.51 152.25 151.33 145.20 128.87 158.09 120.67 65 E18a_E19a KnownJunction 0 96.54 118.20 63.45 87.20 48.56 119.48 148.12 119.40 67.30 84.83 341.72 278.34 179.05 598.68 187.40 253.87 430.01 223.10 177.79 176.03 146.29 186.95 119.59 66 I18 Intron 0 12.98 11.50 5.71 7.33 11.26 15.66 12.74 7.44 6.42 9.46 16.97 7.47 11.08 17.62 3.84 11.80 9.13 22.20 6.51 6.91 10.07 10.78 19.78 67 I18_SR1 SilentIntronRegion 0 3.89 7.57 1.14 2.12 16.86 12.07 10.10 8.44 2.84 2.03 12.05 1.71 10.80 12.05 3.10 9.12 4.45 8.64 0.00 2.62 11.12 5.81 28.07 68 I18_AR1 ActiveIntronRegion 0 10.23 14.24 2.45 5.68 24.08 33.01 17.21 12.10 4.12 3.63 22.87 9.38 18.76 21.38 8.70 20.80 9.90 14.78 3.19 8.51 22.04 12.15 46.99 69 I18_SR2 SilentIntronRegion 0 14.15 11.97 6.32 8.00 10.47 15.88 13.04 7.28 6.90 10.46 17.54 8.15 11.05 18.29 3.87 12.02 9.71 24.01 7.35 7.41 9.81 11.38 18.49 70 E19_Aa NovelBoundary 0 13.93 3.03 12.39 12.95 10.36 8.57 20.76 14.09 7.00 15.39 7.00 24.61 5.84 17.48 6.30 11.88 12.16 21.93 0.00 6.01 8.15 10.96 15.37 71 ER19a ExonRegion 0 161.02 233.61 112.30 111.88 135.59 139.92 162.61 103.03 52.13 65.34 271.02 185.86 116.75 325.75 172.85 168.11 236.06 148.36 132.36 127.78 95.52 128.55 104.25